These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 847 fasta sequence [CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG-CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] [+] EMBL AK107831 [CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGT ] [-] EMBL CB663461 [ CGCGCCGCAGNTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATC ] [-] EMBL CB683442 [ CTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGGGGATGATGATCGATAGCTATAAATAGTGATCAaaaaaaaga ] [+] EMBL BE229530 [ AATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGGCCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCSACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCSTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCC ] [-] EMBL CF324858 [ AAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAG ] [+] EMBL CF197296 [ GTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTGACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCGGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTaa ] [+] EMBL CF334684 [ CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTa ] [+] EMBL CF302241 [ CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] [+] EMBL CF334265 [ CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCA ] consensusID : consensus_12117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA] [+] EMBL AU163540 [GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12117#0 ------------------------------------------CGTCTCTCCACACCGCGC 18 consensus_12117#1 GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGC 60 ****************** consensus_12117#0 GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 78 consensus_12117#1 GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 120 ************************************************************ consensus_12117#0 CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 138 consensus_12117#1 CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 180 ************************************************************ consensus_12117#0 CGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCG 198 consensus_12117#1 CGGGC-GCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGC-ACGTCGCC-TCANCCCCCG 237 ***** ********************************** ******** *** ****** consensus_12117#0 CGACTTGTCCGCGGAGGACGTGGCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAA 258 consensus_12117#1 CGN-TTGTCCGCGGAGGACGTGGC-GCG-AGGAGGCG--CGTCGCGCC--AANTCGGGA- 289 ** ******************** *** ******* ********* * ****** consensus_12117#0 GCGCGTGCGAGT-CACGGCGCCCGT-GCGCGTGTACCACGTCATGAAGGCGCCCGACCTG 316 consensus_12117#1 --GCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCAC---TGCATAAGGATTA 344 ** *** * * ** ** * ** * *** * ** ** ** * * consensus_12117#0 GACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGC 376 consensus_12117#1 GGCTTTA----------------------------------------------------- 351 * * * * consensus_12117#0 ATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAG 436 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 CCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGAT 496 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGC 556 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 TGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAG 616 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 TAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGAC 676 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 ATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATA 736 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 GTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAA 796 consensus_12117#1 ------------------------------------------------------------ consensus_12117#0 AAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 847 consensus_12117#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||