These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1754 fasta sequence [GTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAACAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC-TGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG] [+] EMBL AK105660 [GTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAACAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCCGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAACAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC TGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG] [+] EMBL CB647412 [ AATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTTTTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGC ] [-] EMBL CB647411 [ AAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTTTTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAAC TGGCTTTTTTTTTTAAGCTCT ] [-] EMBL CB651412 [ AAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACTCCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACGTGGCTTTTTTTTT ] consensusID : consensus_12119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1660 fasta sequence [TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCGTGATGT] [+] EMBL AK100618 [TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGACCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGTTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCG ] [+] EMBL CB653451 [ CGCCGTCCTCCCAGGCCGCCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGC ] [+] EMBL CB651411 [ AGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGTTGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCCCCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGCTGGACCCGCCCCTGGAAGAAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGACCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGCGCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACCTCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGGTGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCTCTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTCTTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGGCAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAGAGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATCTGACAGCATCTGGGAAATTGAT ] [-] EMBL CB653452 [ ACAGCATCTGGGAAATGNATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCATCTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAACAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAGCTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAGAGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAATGCTGCAGCGTGATGT] consensusID : consensus_12119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [CCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] [+] EMBL CF329543 [CCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACTTCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] consensusID : consensus_12119#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CCATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAAGTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCTTCATTGTGTAAAACAAAGGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF329542 [CCATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAAGTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCTTCATTGTGTAAAACAAAGGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 -------------------------------------------------------GTCGA 5 consensus_12119#1 TCCCGCCCCCCCCTCTCTCTCACCCTCTCCCCATCCCTCCCCGCCCAACGCCGCCGTCGA 60 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCG 65 consensus_12119#1 CCCGTCGTCGTACTCCCGCCCACCCAGCGCCGCCGCCGCCGCCGCCGTCCTCCCAGGCCG 120 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGT 125 consensus_12119#1 CCCGCCCAGCACCGCCGTCCATCGTCGCCTTCCCCGTCCTCCCCATCCCCCCGCTCGAGT 180 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCC 185 consensus_12119#1 TGCGGGTGAAGAGGGGCTCGAAGCGGCTGCTCCGCCAAGCCCCTCCTCTCGCCCTCCTCC 240 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTGATCTGTGGAAGTAA 245 consensus_12119#1 CCTCTCGCCGAGCTTGCCGTCGCCGCCGTCATCCTGCTGCATCCTG-------------- 286 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CAAACAGTTCGTTTGTCTGTTTCCCCGTAAAATTCCCCAAGCTGGACCCGCCCCTGGAAG 305 consensus_12119#1 -----------------------------------------CTGGACCCGCCCCTGGAAG 305 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 AAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGA 365 consensus_12119#1 AAGAAGAAGTAGCTTAGTGTTGATTTGAGCATAATATGGGTGCCCCGAAGCAGAAATGGA 365 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGC 425 consensus_12119#1 CCGCGGAGGAGGAGTCCGCCCTCAAGGCCGGGATCGCAAAGCACGGGGCTGGGAAATGGC 425 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 GCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACC 485 consensus_12119#1 GCACCATACTCAAAGACCCAGACTTCAGCAACGTCCTGCGCTACCGCTCCAATGTTGACC 485 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGG 545 consensus_12119#1 TCAAGGACAAATGGCGGAACATGAACGTAACCGTGAACGCGTCCGGTGCCCGCGACAGGG 545 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCT 605 consensus_12119#1 TGAAAGCGCCCGTCGTTAAGAAGCCAAGATCCGCTCCTAAGCATGAAGGCCACTCTACCT 605 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTC 665 consensus_12119#1 CTACAGCTATTGCCGCGGTAACTTCAGATGGTGATGATGATGTTGCGGAGCCTGTGCCTC 665 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGG 725 consensus_12119#1 TTGCAACGTCTACTTCATCCAAGAGATCCCTCTCGAGGCTAGACAATATCATAGTAGAGG 725 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAG 785 consensus_12119#1 CAGTAAGGAGCTTGAATGAGCCTACAGGGTCATACAAGACAGCCATAGCTAATTACATAG 785 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 AGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATC 845 consensus_12119#1 AGGAGCAATACTGGCCTCCTGCTGATTTTGATCATGTCCTGTCTTCAAAACTGAATGATC 845 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCAT 905 consensus_12119#1 TGACAGCATCTGGGAAATTGATAAAGGTGAATCGAAAGTACAGGATAGCCCCTAGTTCAT 905 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAA 965 consensus_12119#1 CTTTGTCAGAAGGGCGAAGCTCCAAAGTAGTGCTGCTCGAAGATATAAAAAAAGAACCAA 965 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAG 1025 consensus_12119#1 CAAAGTTAGATAGGGAAGATGTTGCAGTCCTCACTAAATCTCAAATCGATGCTGAATTAG 1025 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAG 1085 consensus_12119#1 CTCGGATGAGAACCATGACTGCAGAAGAGGCTGCTGCTGCTGCTGCTCGTGCAGTTGCAG 1085 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 AGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAG 1145 consensus_12119#1 AGGCAGAAGCTATCATGGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAG 1145 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CTGATGCTGTAGCTGCACAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAA 1205 consensus_12119#1 CTGATGCTGTAGCTGCGCAAGCTTTCGCGGAGGCAGCAATGGCAACATTTAAAAACAGAA 1205 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 GTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGT 1265 consensus_12119#1 GTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCATCAGT 1265 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 TTCCTCCGACCTTGTTGTATGTACACTTGTCCCGCGTTCCAATGCAATGCAATTGCTACT 1325 consensus_12119#1 TTCCTCCGACCTTGTT-------------------------------------------- 1281 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 CCAGTTGGGCTAGGGACGACCCTATTCCATCCTTAACTTATGCAAGCTTATTACAGAACC 1385 consensus_12119#1 --------------------------------------------------------AACC 1285 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 AAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTT 1445 consensus_12119#1 AAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAATTTT 1345 consensus_12119#2 ------------------------------------------------------------ consensus_12119#3 ------------------------------------------------------------ consensus_12119#0 GTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAG 1505 consensus_12119#1 GTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAG 1405 consensus_12119#2 ----------------------------------------------------------CC 2 consensus_12119#3 -----------------------------------------------------------C 1 consensus_12119#0 TAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCC 1565 consensus_12119#1 TAACCCACATATGCTGGGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCC 1465 * consensus_12119#2 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 62 consensus_12119#3 CATTCCTCCTTGGGGGATTGTAATTCCCCTTGTAATCGGTTTTGGCATCAAATAATCAAA 61 consensus_12119#0 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 1625 consensus_12119#1 CATTCCTCCTTGGGTGATTGTAATTCACCTTGTAATCGGTTTTGGCATCAAATAATCAGA 1525 ************** *********** ******************************* * consensus_12119#2 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 122 consensus_12119#3 GTATTGCGTTGTTGTTGCATGTACAAATGTAACAGTGTGTGTTTGGTTGAATGGTTCCCT 121 consensus_12119#0 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 1685 consensus_12119#1 GTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTTCACT 1585 ************************* **************** ******* ****** ** consensus_12119#2 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAAAAAAAAAAA 182 consensus_12119#3 TCATTGTGTAAAACAAA-GGCTTTTTTTTTTAAAATTTTTTTCAAGGAAAAAAAAAAAAA 180 consensus_12119#0 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAAT 1745 consensus_12119#1 TCATTGTGTATATCAACTGGCTTTTTTTTTTAAGCTCTTTCTCATGGATAATATGGTAAT 1645 ********** * *** *************** * *** *** *** ** * ** consensus_12119#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 241 consensus_12119#3 AAAAAAAAAAAAAAAAAAAAA-------------------------------------- 201 consensus_12119#0 GCTGCAGCG-------------------------------------------------- 1754 consensus_12119#1 GCTGCAGCGTGATGT-------------------------------------------- 1660 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||