cluster # 12128

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Oryza sativa
cluster # 12128 cluster # 12128 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12128#0 length = 417 sequences # 8

consensus_12128#1 length = 382 sequences # 1
consensus_12128#2 length = 273 sequences # 1

consensusID : consensus_12128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 417
fasta sequence

                              [TTTAAGTTTTTTTTTCACAAGCAAATACAAAGCGGCATTAGAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC-TGTATACCTTTGCGGC]

[+] EMBL CB684474             [TTTAAGTTTTTTTTTCACAAGCAAATACAAAGCGGCATCTTAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC TGTATACCTTTGCGG ]
[-] EMBL AU082888             [         TTTTTTCACAAGCAAATACAAAGCGGCATTAGAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC TGTATACCTTTGCGGC]
[-] EMBL BE607421             [                  AAGCAAATACAAAGCGGCATTAGAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAGTGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGAAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCA                                                                                          ]
[-] EMBL OS16255              [                        ATACAAAGCGGCATTAGAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACGAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATTGGGAGC TGTATAC         ]
[-] EMBL AK072440             [                                    ATTAGAGATTTAAAGTAAAACATAAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC TGTATACCTTTGCGGC]
[-] EMBL AU092741             [                                                                 tttttGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC TGTATACCTTTGCGGC]
[-] EMBL BI795760             [                                                                      tttttCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTC TTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAGTGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGAAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGCTTGTATACCTTTGCGGC]
[-] EMBL OS0499A              [                                                                                                                                                                               catTTTTCCGCGCNTGACCAAACTAAAACATTACTTGATATTACTAGACAGGGT ATGAAGATTACCNTACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACTTGCATCACAAGAGAATGGGCTCCGATCACGCA TCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGC TGTATACCTTTGCGGC]




>consensus_12128#0
TTTAAGTTTTTTTTTCACAAGCAAATACAAAGCGGCATTAGAGATTTAAAGTAAAACATA
AGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAAT
GAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATT
TTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTA
CCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACT
TGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTT
TGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGCTGTATACCTTTGCGGC

consensusID : consensus_12128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [TTTTTTTTTTTAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGNCTACTTGCATCACAAGAGAATGGGCTCCGATCACGNATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGCTGTATACCTTTGCGGCCGGGGAGGGTCTTG]

[-] EMBL AU068340             [TTTTTTTTTTTAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGNCTACTTGCATCACAAGAGAATGGGCTCCGATCACGNATTCTCCTTGATGGCCTCATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGCTGTATACCTTTGCGGCCGGGGAGGGTCTTG]




>consensus_12128#1
TTTTTTTTTTTAGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCA
ACGTACAAAATGAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGAC
AAGGCCACATTTTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGT
AATGAAGATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGG
CTTAGNCTACTTGCATCACAAGAGAATGGGCTCCGATCACGNATTCTCCTTGATGGCCTC
ATCTATAGCTTTGATATTGTCCCTCAGTATCTTCCACTGATCCATCGGGAGCTGTATACC
TTTGCGGCCGGGGAGGGTCTTG

consensusID : consensus_12128#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CAGACAAGGCCACATTTTCNGCGCCNGACCAAACAAAAACATTACTTGATATTACTANACAGGGTAATGAANATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATATNAGACAGACGTANGCTNAGTCTACNTGCATCNCAAGACAATGGGCTCCGATCACGCNTTCTCCTTNATGGCCCCATCTATNNCTNTGATATTGTCCCTCACTATCTTCCACTGATCCATTCGGGAGCTGTATACCTCTGCGGCCGGGGATGGTCTTGCTCGT]

[-] EMBL AU183581             [CAGACAAGGCCACATTTTCNGCGCCNGACCAAACAAAAACATTACTTGATATTACTANACAGGGTAATGAANATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATATNAGACAGACGTANGCTNAGTCTACNTGCATCNCAAGACAATGGGCTCCGATCACGCNTTCTCCTTNATGGCCCCATCTATNNCTNTGATATTGTCCCTCACTATCTTCCACTGATCCATTCGGGAGCTGTATACCTCTGCGGCCGGGGATGGTCTTGCTCGT]




>consensus_12128#2
CAGACAAGGCCACATTTTCNGCGCCNGACCAAACAAAAACATTACTTGATATTACTANAC
AGGGTAATGAANATTACCATACCAAAAGTGCAATATTCCTCGGAGTCATATNAGACAGAC
GTANGCTNAGTCTACNTGCATCNCAAGACAATGGGCTCCGATCACGCNTTCTCCTTNATG
GCCCCATCTATNNCTNTGATATTGTCCCTCACTATCTTCCACTGATCCATTCGGGAGCTG
TATACCTCTGCGGCCGGGGATGGTCTTGCTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12128#0      TTTAAGTTTTTTTTTCACAAGCAAATACAAAGCGGCATTAGAGATTTAAAGTAAAACATA 60
consensus_12128#1      -------------------------------------------------TTTTTTTTTTT 11
consensus_12128#2      ------------------------------------------------------------
                                                                                   

consensus_12128#0      AGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAAT 120
consensus_12128#1      AGTACACGCAGAAACCAACCAACCATTAACAGATGGACCTCCTTACCCAACGTACAAAAT 71
consensus_12128#2      ------------------------------------------------------------
                                                                                   

consensus_12128#0      GAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATT 180
consensus_12128#1      GAGGAGAGCACATTAGGCACATAGCTGCTTCTTTGGCACAATACCAGACAAGGCCACATT 131
consensus_12128#2      --------------------------------------------CAGACAAGGCCACATT 16
                                                                   ****************

consensus_12128#0      TTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTA 240
consensus_12128#1      TTCCGCGCATGACCAAACTAAAACATTACTTGATATTACTAGACAGGGTAATGAAGATTA 191
consensus_12128#2      TTCNGCGCCNGACCAAACAAAAACATTACTTGATATTACTANACAGGGTAATGAANATTA 76
                       *** ****  ******** ********************** ************* ****

consensus_12128#0      CCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGTCTACT 300
consensus_12128#1      CCATACCAAAAGTGCAATATTCCTCGGAGTCATAAAAGACAGACGTAGGCTTAGNCTACT 251
consensus_12128#2      CCATACCAAAAGTGCAATATTCCTCGGAGTCATATNAGACAGACGTANGCTNAGTCTACN 136
                       **********************************  *********** *** ** **** 

consensus_12128#0      TGCATCACAAGAGAATGGGCTCCGATCACGCATTCTCCTTGATGGCCTCATCTATAGCTT 360
consensus_12128#1      TGCATCACAAGAGAATGGGCTCCGATCACGNATTCTCCTTGATGGCCTCATCTATAGCTT 311
consensus_12128#2      TGCATCNCAAGACAATGGGCTCCGATCACGCNTTCTCCTTNATGGCCCCATCTATNNCTN 196
                       ****** ***** *****************  ******** ****** *******  ** 

consensus_12128#0      TGATATTGTCCCTCAGTATCTTCCACTGATCCAT-CGGGAGCTGTATACCTTTGCGGC-- 417
consensus_12128#1      TGATATTGTCCCTCAGTATCTTCCACTGATCCAT-CGGGAGCTGTATACCTTTGCGGCCG 370
consensus_12128#2      TGATATTGTCCCTCACTATCTTCCACTGATCCATTCGGGAGCTGTATACCTCTGCGGCCG 256
                       *************** ****************** **************** ******  

consensus_12128#0      -----------------
consensus_12128#1      GGGAGGGTCTTG----- 382
consensus_12128#2      GGGATGGTCTTGCTCGT 273