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Oryza sativa
cluster # 12138 cluster # 12138       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12138#0 length = 1141 sequences # 3  
consensus_12138#1 length = 980 sequences # 4  
consensus_12138#2 length = 403 sequences # 2  
consensus_12138#3 length = 383 sequences # 1  

consensusID : consensus_12138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1141
fasta sequence
                              [TCTTCACCTCTCGCTCCTATAAAATCCAACGTGGACAACCAAACGTCCAAGGCCACACACAAACTCCAAACCCATTACTCTCCTCACGACATTCTCGCGCTCTCCCCTCCTGTAAAGATCGGTGGTTGCGAGCGGCGCCACGGTAAAGCGGAGCAAATTACTCCTATATATTACCCTGCAGCGTAGACCGATCGATCGGGCGGCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGGCAGCGAAGCACGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCAGCGGCGAGGTGCCCCGGAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGCTCGTACGGCGCGGCCGGCGTGGAGTCCAGCCCCGCCGAGCTAGGCGCCCGGGGCCGCGCGATCCCGTCCGCCCGCGCCGGCCGGAAGGCCCCGCTGGATCGGGCCGCCGGCTCGCTGCCGGTGAACATACCGGACTGGCAGAAGATTCTTGGGGTCGAGTACAGGGATCACCAGGCCGCTGCTGCGGAGTGGGAGCT-CCAGGGCGACGGCGACGACGACTACGAGTACGGCAAGGTGGCCGGCGTCGGCGGCGTGGTGATACCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCGGCGTCGCTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTATAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTAAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTTTTTCTACCCTTCGAGTATGGGAAATTCCACATTACTGCACAGTGTATGTATTATACCACTGTAGTATGTAGTATGCAGAATTGTACATGCCGTTTTGTGCGAAATTGCAGAGAGC]

[+] EMBL AK065832             [TCTTCACCTCTCGCTCCTATAAAATCCAACGTGGACAACCAAACGTCCAAGGCCACACACAAACTCCAAACCCATTACTCTCCTCACGACATTCTCGCGCTCTCCCCTCCTGTAAAGATCGGTGGTTGCGAGCGGCGCCACGGTAAAGCGGAGCAAATTACTCCTATATATTACCCTGCAGCGTAGACCGATCGATCGGGCGGCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGGCAGCGAAGCACGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCAGCGGCGAGGTGCCCCGGAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGCTCGTACGGCGCGGCCGGCGTGGAGTCCAGCCCCGCCGAGCTAGGCGCCCGGGGCCGCGCGATCCCGTCCGCCCGCGCCGGCCGGAAGGCCCCGCTGGATCGGGCCGCCGGCTCGCTGCCGGTGAACATACCGGACTGGCAGAAGATTCTTGGGGTCGAGTACAGGGATCACCAGGCCGCTGCTGCGGAGTGGGAGCT CCAGGGCGACGGCGACGACGACTACGAGTACGGCAAGGTGGCCGGCGTCGGCGGCGTGGTGATACCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCGGCGTCGCTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTATAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTAAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTTTTTCTACCCTTCGAGTATGGGAAATTCCACATTACTGCACAGTGTATGTATTATACCACTGTAGTATGTAGTATGCAGAATTGTACATGCCGTTTTGTGCGAAATTGCAGAGAGC]
[+] EMBL OSS2434A             [                                                                   AAACCCATTACTCTCCTCACGACATTCTCGCGCTCTCCCCTCCTGTAAAGATCGGTGGTTGCGAGCGGCGTCACGGTAAAGCGGAG AAATTACTCCTATATATTACCCTGCAGCGTAGACCGATCGATCGGGCGGCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGGCAG GAAGACCGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCA NGGCGAGGTGCCCCGGAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGTNTGTACGGCGNGGCCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB964826             [                                                                                                                                                                      TATATTACCCTTCAGCGTAGACCGATCGATCGGTCGTCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGGCAGCGAAGCACGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCAGCGGCGAGGTGCCCCGGAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGCTCGTACGGCGCGGCCGGCGTGGAGTCCAGCCCCGCCGAGCTAGGCGCCCGGGGCCGCGCGATCCCGTCCGCCCGCGCCGGCCGGAAGGCCCCGCTGGATCGGGCCGCCGGCTCGCTGCCGGTGAACATACCGGACTGGCAGAAGATTCTTGGGGTCGAGTACAGGGATCACCAGGCCGCTGCTGCGGAGT GGAGCTACCAGGGCGACGGCGACGACGACTACGAGTACGGCAAGGTGGCCGGCGTCGGCGGCGTGGT ATACCGCCGCACGAGCTGGCGTGGCGC GCCGCaagct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_12138#0 TCTTCACCTCTCGCTCCTATAAAATCCAACGTGGACAACCAAACGTCCAAGGCCACACAC AAACTCCAAACCCATTACTCTCCTCACGACATTCTCGCGCTCTCCCCTCCTGTAAAGATC GGTGGTTGCGAGCGGCGCCACGGTAAAGCGGAGCAAATTACTCCTATATATTACCCTGCA GCGTAGACCGATCGATCGGGCGGCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGG CAGCGAAGCACGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCAGCGGCGAGGTGCCCCG GAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGCTCGTACGGCGCGGCCG GCGTGGAGTCCAGCCCCGCCGAGCTAGGCGCCCGGGGCCGCGCGATCCCGTCCGCCCGCG CCGGCCGGAAGGCCCCGCTGGATCGGGCCGCCGGCTCGCTGCCGGTGAACATACCGGACT GGCAGAAGATTCTTGGGGTCGAGTACAGGGATCACCAGGCCGCTGCTGCGGAGTGGGAGC TCCAGGGCGACGGCGACGACGACTACGAGTACGGCAAGGTGGCCGGCGTCGGCGGCGTGG TGATACCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCGGCGTCGCTGTCGGTGCACGAGG GGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGA AGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCC GCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTT TTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAG TCCTATAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTG TGACAATTTTAAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGT ATTTTTTTTCTACCCTTCGAGTATGGGAAATTCCACATTACTGCACAGTGTATGTATTAT ACCACTGTAGTATGTAGTATGCAGAATTGTACATGCCGTTTTGTGCGAAATTGCAGAGAG C



consensusID : consensus_12138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 980
fasta sequence
                              [TTCCCTTCCCTCTCTTCTTTTGCCGTGCTCCCAGATTCTCCGGTCGCCACGACTGCTTCGTGAACAATCTGCATCGCTCCGCGA-TTCGTGTTGGTTCTTTTTTTTGTTTCTTGGCATTCACGGCGGCGGCAATGGCGAGGAGCACGCGGTCGGCGGCGACGGAGCAAGCGTACAGCCGGTTCGCGCCGACGGCGGCGTCGTCACGCGGCCGTGGCGTAGGTGGCGGCAACGGTTTCGACGAGTTCGACGAGTCGGACATCTGGGGATCGTTCGAGCCGGCCGCGGAGGTAGCCGAGTCACCCCGGGCGGCACGTCATCAGGTGCCGGCCGCCCGGCCGCCGGGGCGGAAGGCGGCGGCGGCGGCGTCGAAGCCGGCGGCGCACGGGTCGCTGCCGGTGAACATACCGGACTGGTCCAAGATCCTGGGCGACGAGTACAGGGGGCACCACGCCGGCGACTGGGAGGCGGACGACGTGGACGACGACGACATCGACGCGGCGTCGGCCGTGGCGGTGCTGCCGCCGCACGAGCTGGCGTGGCGCCGCCGCGCCGCGTCGCTGTCGGTGCACGAGGACGGGATGGGGATCGGCCGGACGCTCAAGGTCCGCGACGCGGTGTGGAAGAAGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCACGTCACCTCCATCCATCGAGCTGTTTTGTTTGAACGAACAGAGGATAGATTAATTTAACTCTCTCGAGTGCTATTGGTAGTTGGTGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTTCGTGCTTTTGCCCTTCTCTTTTTTTGGGCCTTTTTCTTTTCTTTTCTTAATTTTCTCGGCACATTCAGGAGAGGATCAGAAGAGGTAGTAGTCAGGTAGAGGAATTAGTGCTAGCTGCTTGTTGTTGATTCATCGTGACATGTACTATTTCTCGAGAGAATGAAGATGATAAACACGACATATTTGTTTAGTATTAAAAA]

[+] EMBL AK062480             [TTCCCTTCCCTCTCTTCTTTTGCCGTGCTCCCAGATTCTCCGGTCGCCACGACTGCTTCGTGAACAATCTGCATCGCTCCGCGA TTCGTGTTGGTTCTTTTTTTTGTTTCTTGGCATTCACGGCGGCGGCAATGGCGAGGAGCACGCGGTCGGCGGCGACGGAGCAAGCGTACAGCCGGTTCGCGCCGACGGCGGCGTCGTCACGCGGCCGTGGCGTAGGTGGCGGCAACGGTTTCGACGAGTTCGACGAGTCGGACATCTGGGGATCGTTCGAGCCGGCCGCGGAGGTAGCCGAGTCACCCCGGGCGGCACGTCATCAGGTGCCGGCCGCCCGGCCGCCGGGGCGGAAGGCGGCGGCGGCGGCGTCGAAGCCGGCGGCGCACGGGTCGCTGCCGGTGAACATACCGGACTGGTCCAAGATCCTGGGCGACGAGTACAGGGGGCACCACGCCGGCGACTGGGAGGCGGACGACGTGGACGACGACGACATCGACGCGGCGTCGGCCGTGGCGGTGCTGCCGCCGCACGAGCTGGCGTGGCGCCGCCGCGCCGCGTCGCTGTCGGTGCACGAGGACGGGATGGGGATCGGCCGGACGCTCAAGGTCCGCGACGCGGTGTGGAAGAAGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCACGTCACCTCCATCCATCGAGCTGTTTTGTTTGAACGAACAGAGGATAGATTAATTTAACTCTCTCGAGTGCTATTGGTAGTTGGTGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTTCGTGCTTTTGCCCTTCTCTTTTTTTGGGCCTTTTTCTTTTCTTTTCTTAATTTTCTCGGCACATTCAGGAGAGGATCAGAAGAGGTAGTAGTCAGGTAGAGGAATTAGTGCTAGCTGCTTGTTGTTGATTCATCGTGACATGTACTATTTCTCGAGAGAATGAAGATGA                               ]
[+] EMBL AU068143             [                                      TCCGGTCGCCACGACTGCTTCGTGAACAATCTGCATCGCTCCGCGATTTCGTGTTGGTTCTTTTTTTTGTTTCTTGGCATTCACGGCGGCGGCAATGGCGAGGAGCACGCGGTCGGCGGCGACGGAGCAAGCGTACAGCCGGTTCGCGCCGACGG NGCGTCGTCACGCGGCCGTGGCGTAGGTGGCGGCAACGGTTTCGACGAGTTCGACGAGTCGGACATCTGGGGATCGTTCGAGCCGGCCGCGGAGGTANCCGAGTCACCCCGGGCGGCAC TCATCAGGTGCCGGCNGCCCGG CGCCGGGGCGGAANGCGGCGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE229897             [                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACAGGGGGCACCACGCCGGCGACTGGGAGGAGGACGACCTCAGCGACGACCACTACGACCTGGCGTCGGCCGTGGCGGTGCTGCCGCCGCACGAGCTGGCGTGGCGCCGCCGCGCCGCGTCGCTGTCGGTGCACGAGGACGGGATGGGGATCGGCCGGACGCTCAAGGTCCGCGACGCGGTGTGGAAGAAGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCACGTCACCTCCATCCATCGAGCTGTTTTGTTTGAACGAACAGAGGATAGATTAATTTAACTCTCTCGAGTGCTATTGGTAGTTGGTGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTTCGTGCTTTTGCCCTTCTCTTTTTTTGGGCCTTTTTCTTTTCT                                                                                                                                                              ]
[+] EMBL AU166424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGCCGCGCCGCGTCGCTGTCGGTGCACGAGGACGGGATGGGGATCGGCCGGACGCTCAAGGTCCGCGACGCGGTGTGGAAGAAGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCACGTCACCTCCATCCATCGAGCTGTTTTGTTTGAACGAACAGAGGATAGATTAATTTAACTCTCTCGAGTGCTATTGGTAGTTGGTGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTTCGTGCTTTTGCCCTTCTCTTTTTTTGGGCCTTTTTCTTTTCTTTTCTTAATTTTCTCGGCACATTCAGGAGAGGATCAGAAGAGGTAGTAGTCAGGTAGAGGAATTAGTGCTAGCTGCTTGTTGTTGATTCATCGTGACATGTACTATTTCTCGAGAGAATGAAGATGATAAACACGACATATTTGTTTAGTATTAAAAA]


>consensus_12138#1 TTCCCTTCCCTCTCTTCTTTTGCCGTGCTCCCAGATTCTCCGGTCGCCACGACTGCTTCG TGAACAATCTGCATCGCTCCGCGATTCGTGTTGGTTCTTTTTTTTGTTTCTTGGCATTCA CGGCGGCGGCAATGGCGAGGAGCACGCGGTCGGCGGCGACGGAGCAAGCGTACAGCCGGT TCGCGCCGACGGCGGCGTCGTCACGCGGCCGTGGCGTAGGTGGCGGCAACGGTTTCGACG AGTTCGACGAGTCGGACATCTGGGGATCGTTCGAGCCGGCCGCGGAGGTAGCCGAGTCAC CCCGGGCGGCACGTCATCAGGTGCCGGCCGCCCGGCCGCCGGGGCGGAAGGCGGCGGCGG CGGCGTCGAAGCCGGCGGCGCACGGGTCGCTGCCGGTGAACATACCGGACTGGTCCAAGA TCCTGGGCGACGAGTACAGGGGGCACCACGCCGGCGACTGGGAGGCGGACGACGTGGACG ACGACGACATCGACGCGGCGTCGGCCGTGGCGGTGCTGCCGCCGCACGAGCTGGCGTGGC GCCGCCGCGCCGCGTCGCTGTCGGTGCACGAGGACGGGATGGGGATCGGCCGGACGCTCA AGGTCCGCGACGCGGTGTGGAAGAAGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCA CGTCACCTCCATCCATCGAGCTGTTTTGTTTGAACGAACAGAGGATAGATTAATTTAACT CTCTCGAGTGCTATTGGTAGTTGGTGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTT CGTGCTTTTGCCCTTCTCTTTTTTTGGGCCTTTTTCTTTTCTTTTCTTAATTTTCTCGGC ACATTCAGGAGAGGATCAGAAGAGGTAGTAGTCAGGTAGAGGAATTAGTGCTAGCTGCTT GTTGTTGATTCATCGTGACATGTACTATTTCTCGAGAGAATGAAGATGATAAACACGACA TATTTGTTTAGTATTAAAAA



consensusID : consensus_12138#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 403
fasta sequence
                              [CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU161467             [CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU175204             [                                                                                                                                   TCGCCGCGCANACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTANTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTANATGCAAGAGAGGACAGGAAGANTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12138#2 CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGG GACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCC GGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTA ATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAAT TGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGT TTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATC AGCTGATCGATCCTGTATTTTAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12138#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence
                              [CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTAAAAAAAAAAAAAAAAAAC]

[+] EMBL CB965143             [CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTAAAAAAAAAAAAAAAAAAC]


>consensus_12138#3 CTGTCGGTGCACGAGGGGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGG GACGCGGTCTGGAAGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCC GGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAGGTTTAAAATGAGTACTTAGTAGTACTA ATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGATAAGAAAT TGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGT TTGTTCAATCAAGGTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATC AGCTAAAAAAAAAAAAAAAAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      TCTTCACCTCTCGCTCCTATAAAATCCAACGTGGACAACCAAACGTCCAAGGCCACACAC 60
consensus_12138#1      ------------------------------------------------------------
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      AAACTCCAAACCCATTACTCTCCTCACGACATTCTCGCGCTCTCCCCTCCTGTAAAGATC 120
consensus_12138#1      ---------------------------TTCCCTTCCCTCTCTTCTTTTGCCGTGCTCCCA 33
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      GGTGGTTGCGAGCGGCGCCACGGTAAAGCGGAGCAAATTACTCCTATATATTACCCTGCA 180
consensus_12138#1      GATTCTCCGGTCGCCACGACTGCTTCGTGAACAATCTGCATCGCTCCGCGATTCGTGTTG 93
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      GCGTAGACCGATCGATCGGGCGGCGGCGGCGGCGTATGGCTGGGAGCGCGAGGTCGGCGG 240
consensus_12138#1      GTTCTTTTTTTTGTTTCTTGGCATTCACGGCGGCGGCAATGGCGAGGAGCACGCGGTCGG 153
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      CAGCGAAGCACGCCTACCGGATGTTCGCGCCGTCCAGGGGCGCAGCGGCGAGGTGCCCCG 300
consensus_12138#1      CGGCGACGGAGCAAGCGTACAGCCGGTTCGCGCCGACGGCGGCGTCGTCACGCGGCCGTG 213
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      GAAGCCCCGGGGCGGACGAGTTCGACGAGTCGGACGTGTGGGGCTCGTACGGCGCGGCCG 360
consensus_12138#1      GCGTAGGTGGCGGCAACGGTTTCGACGAGTTCGACGAGTCGGACATCTGGGGATCGTTCG 273
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      GCGTGGAGTCCAGCCCCGCCGAGCTAGGCGCCCGGGGCCGCGCGATCCCGTCCGCCCGCG 420
consensus_12138#1      AGCCGGCCGCGGAGGTAGCCGAGTCACCCCGGGCGGCACGTCATCAGGTGCCGGCCGCCC 333
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      CCGGCCGGAAGGCCCCGCTGGATCGGGCCGCCGGCTCGCTGCCGGTGAACATACCGGACT 480
consensus_12138#1      GGCCGCCGGGGCGGAAGGCGGCGGCGGCGGCGTCGAAGCCGGCGGCGCACGGGTCGCTGC 393
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      GGCAGAAGATTCTTGGGGTCGAGTACAGGGATCACCAGGCCGCTGCTGCGGAGTGGGAGC 540
consensus_12138#1      CGGTGAACATACCGGACTGGTCCAAGATCCTGGGCGACGAGTACAGGGGGCACCACGCCG 453
                                                                                   

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      TCCAGGGCGACGGCGACGACGACTACGAGTACGGCAAGGTGGCCGGCGTCGGCGGCGTGG 600
consensus_12138#1      GCGACTGGGAGGCGGACGACGTGGACGACGACGACATCGACGCGGCGTCGGCCGTGGCGG 513
                                                                                   

consensus_12138#2      --------------------------------------------CTGTCGGTGCACGAGG 16
consensus_12138#3      --------------------------------------------CTGTCGGTGCACGAGG 16
consensus_12138#0      TGATACCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCGGCGTCGCTGTCGGTGCACGAGG 660
consensus_12138#1      TGCTGCCGCCGCACGAGCTGGCGTGGCGCCGCCGCGCCGCGTCGCTGTCGGTGCACGAGG 573
                                                                   ****************

consensus_12138#2      GGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGA 76
consensus_12138#3      GGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGA 76
consensus_12138#0      GGATCGGGAGGACGCTCAAGGGGCGCGACCTCAGCCGGGTCCGGGACGCGGTCTGGAAGA 720
consensus_12138#1      A---CGGGATGGGGATC---GGCCGGACGCTCAA---GGTCCGCGACGCGGTGTGGAAGA 624
                           ***** *  * **   ** **    ****    ****** ******** *******

consensus_12138#2      AGACCGGCTTCGAGGACTGACCGGCGAGCTA--GCTGATCACTCCCGGTGGTTGGCCT-C 133
consensus_12138#3      AGACCGGCTTCGAGGACTGACCGGCGAGCTA--GCTGATCACTCCCGGTGGTTGGCCT-C 133
consensus_12138#0      AGACCGGCTTCGAGGACTGACCGGCGAGCTA--GCTGATCACTCCCGGTGGTTGGCCT-C 777
consensus_12138#1      AGACCGGGTTCCAGGCCTGACACTTTAGCTTTTGCACGTCACCTCCATCCATCGAGCTGT 684
                       ******* *** *** *****     ****   **   ****  **     * *  **  

consensus_12138#2      GCCGCGCAGACGTGCAGTAGGTTTA--AAATGAGTACTTAGTAGTACTAAT--TACTTTA 189
consensus_12138#3      GCCGCGCAGACGTGCAGTAGGTTTA--AAATGAGTACTTAGTAGTACTAAT--TACTTTA 189
consensus_12138#0      GCCGCGCAGACGTGCAGTAGGTTTA--AAATGAGTACTTAGTAGTACTAAT--TACTTTA 833
consensus_12138#1      TTTGTTTGAACGAACAGAGGATAGATTAATTTAACTCTCTCGAGTGCTATTGGTAGTTGG 744
                          *     ***  ***  * *  *  ** * *   **    *** *** *  ** **  

consensus_12138#2      TTCTCTTTT-----GTTCTTATTTCTT----TTTCTTTCGCCATGGACAAGATAAGAAAT 240
consensus_12138#3      TTCTCTTTT-----GTTCTTATTTCTT----TTTCTTTCGCCATGGACAAGATAAGAAAT 240
consensus_12138#0      TTCTCTTTT-----GTTCTTATTTCTT----TTTCTTTCGCCATGGACAAGATAAGAAAT 884
consensus_12138#1      TGTTTTTTTTAGCAGCACTTAACTGCACAAGTGTTTCGTGCTTTTGCCCTTCTCTTTTTT 804
                       *  * ****     *  ****  *       * * *   **  * * *    *      *

consensus_12138#2      TGGGTAGTATTC----CTAGTCCTAGAAGGCTAG----ATGCAAGAGAGGACAGGAAGAG 292
consensus_12138#3      TGGGTAGTATTC----CTAGTCCTAGAAGGCTAG----ATGCAAGAGAGGACAGGAAGAG 292
consensus_12138#0      TGGGTAGTATTC----CTAGTCCTATAAGGCTAG----ATGCAAGAGAGGACAGGAAGAG 936
consensus_12138#1      TGGGCCTTTTTCTTTTCTTTTCTTAATTTTCTCGGCACATTCAGGAGAGGATCAGAAGAG 864
                       ****   * ***    **  ** **     ** *    ** ** *******   ******

consensus_12138#2      TGGGTGGTTTGTTCAATCAAGGTGTGACAATT-----TTGAGGGCACCTGGAGATGGTTG 347
consensus_12138#3      TGGGTGGTTTGTTCAATCAAGGTGTGACAATT-----TTGAGGGCACCTGGAGATGGTTG 347
consensus_12138#0      TGGGTGGTTTGTTCAATCAAGGTGTGACAATT-----TTAAGGGCACCTGGAGATGGTTG 991
consensus_12138#1      GTAGTAGTCAGGTAGAGGAATTAGTGCTAGCTGCTTGTTGTTGATTCATCGTGACATGTA 924
                          ** **  * *  *  **   ***  *  *     **   *   * * * **    * 

consensus_12138#2      GAGTTGGTTGATCAGCTGATCGATCCTGTATTTTAAAAAAAAAAAAAAAAAAAAAA---- 403
consensus_12138#3      GAGTTGGTTGATCAGCTAA---------------AAAAAAAAAAAAAAAAC--------- 383
consensus_12138#0      GAGTTGGTTGATCAGCTGATCGATCCTGTATTTTTTTTCTACCCTTCGAGTATGGGAAAT 1051
consensus_12138#1      CTATTTCTCGAGAGAATGAA-GATGATAAACACGACATATTTGTTTAGTATTAAAAA--- 980
                          **  * **     * *                                         

consensus_12138#2      ------------------------------------------------------------
consensus_12138#3      ------------------------------------------------------------
consensus_12138#0      TCCACATTACTGCACAGTGTATGTATTATACCACTGTAGTATGTAGTATGCAGAATTGTA 1111
consensus_12138#1      ------------------------------------------------------------
                                                                                   

consensus_12138#2      ------------------------------
consensus_12138#3      ------------------------------
consensus_12138#0      CATGCCGTTTTGTGCGAAATTGCAGAGAGC 1141
consensus_12138#1      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)