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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1516 fasta sequence
[TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAACAAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGACACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTTCCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTTGTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTAACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATTTTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCTTTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGATCTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGATATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTTATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAAAAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTAC-GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA-CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA-CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA-GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT-CCATGGTAAAAAAAAA]
[+] EMBL CB623283 [TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAACAAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGACACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTTCCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTTGTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTAACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATTTTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCTTTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGATCTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATG ]
[-] EMBL CB623284 [ GGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAATCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGTGTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGATATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTTATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAAAAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTACTTGC AGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTAC CATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATA ]
[-] EMBL CF311012 [ gC GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGGAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAAAAAA]
[-] EMBL CF278982 [ GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCA CCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGTCGCAACCACGATACCCACCAAGGTGAATGTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTACT AANGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAATAAATCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTAATCATATTTT CCATGGTAAAAAA ]
[-] EMBL CF282009 [ GGCAAGGTGTACAATGTGACCAAGTTTTTGGAGGATCACCCCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTTGAAGATGTGGGGCACAGCACCCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATTTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAAAAAAAaaaaaaaa ]
[+] EMBL BI797472 [ AGTTTTTGGAGGATCA CCTGGAGGTGATGATGTCTTGTTGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTC AAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTCAAATGTGACTAAATCCAATGGATATTTGATCATATTTTCCCATGGTAAAAA ]
[+] EMBL AU166181 [ TGTCTTCGACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCA CCACTGCTCGGGCGATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAA ]
[+] EMBL AU095577 [ GAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA GTACACGCCCCCGAAGCAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTNGCGATATTGGGATTGGCTGTTGCTGTAAGGATCTACACCAAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCATATTTT CCATGGTAAAAAA ]
consensusID : consensus_12141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[TGAAGTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGTCTGTAAGGATCTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCAAAAAAAAAAA]
[+] EMBL BI807136 [TGAAGTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCAAGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGATTGGCTGTTGTCTGTAAGGATCTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTTAATAAGTTAGTGAGGATCCGAGGATTGCGTATTTTGTACCAGCATGGTCTGTCATGTTTGTTATGGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTGATCAAAAAAAAAAA]
consensusID : consensus_12141#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence
[TCGCCTCGGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTCCAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTNTACAATGTNA]
[+] EMBL C27590 [TCGCCTCGGCTCCTCGTCCCTTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGAGGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTCCAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATCATCGGCGGCAAGGTNTACAATGTNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12141#0 TTTCTTTCCTCGTTGGATCCAAAGCTCCTCCTCCTCCTCGCCTCGCGCTCCTCGTCCCTT 60
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 CTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAGAGAGA 120
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GGAGCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATGTCCAACAAC 180
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 AAGGTGCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTGGCTCATC 240
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 ATCGGCGGCAAGGTCTTCTCCCTTTTCTCTTCTCTTCTCTTTTCTTTTGATTAGTATGAC 300
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 ACACGGTCTTGCTGGGAACTTTTAGGGACAAACTTTTCATCACTGTGCGGATATGGCTTT 360
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 CCAGATAGGATAGGATAGCAAACATCCCTCATAAATTAGCCTATCCTGACCTTAATTTTT 420
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GTTGAGAATCTCCTACTGCACATTTTTTTTTCCTGTAATGTTCCTGAACATCTTTTCTTA 480
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 ACCAGTCATTTTCATGGAGCCTATATAAGAATGTACCTCACTAGTCCTGGTATAAATATT 540
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 TTGTGGTTTAATGCGAGAAACTGTTCTTTGTAATCTAAATGTGCAGCTCTTGTTTCATCT 600
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 TTTATTCCATAGGATTCACAATTCTGTTGATATGTCAAACGCTAAAGAATAATGCAAGAT 660
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 CTTTTACTTCATAGAGCCAAGGAAAAATCAGTTTTGCTTACTTCTCTATTTCCAGTTCAA 720
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 TCAGATGAACAAGCCTGTTTAAAATATGCTCAGAACTTTAGGGAGCTTATATGTTCTCGT 780
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GTAGTATATGTCAAGAAGCTATTTTGACTCTGTGAACATGATGTTGGCTGATCAAAAGAT 840
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 ATGTATTTTTTCAACAAACTGTTCTATAAGGGAGGTTGCTAGGGTCATTTGCTCATTTTT 900
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 ATACACTGAAATGTGCTTGGTTATTGTTGCTTTTATATTGACGAGGCCTTATATGGTGAA 960
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 AAAAAAATCCCCTTTACACAAATCAAACTCATAGAAGTATTTGTTTTGCTACGGCAAGGT 1020
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GTACAATGTGACCAAGTTTTTGGAGGATCACCCTGGAGGTGATGATGTCTTGTTGTCTTC 1080
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GACTGCCAAGGATGCTACCGACGACTTCGAAGATGTGGGGCACAGCACCACTGCTCGGGC 1140
consensus_12141#1 ------------------------------------------------------------
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GATGATGGATGAGTATTATGTCGGCGACATTGACGCAACCACGATACCCACCAAGGTGAA 1200
consensus_12141#1 --------------------------------------------------------TGAA 4
consensus_12141#2 ------------------------------------------------------------
consensus_12141#0 GTACACGCCCCCGAAGCAA-CCACACTACAACCAGGATAAGACACCAGAGTTCATCATCA 1259
consensus_12141#1 GTACACGCCCCCGAAGCAAACCACACTACAACCAGGATAAGACACCAGAGTTCATCATCA 64
consensus_12141#2 -----------------------------------------TCGCCTCGGCTCCTCGTCC 19
* ** * ** ** **
consensus_12141#0 AGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGA-TTGGCTGTTG-CTGTAAGGAT 1317
consensus_12141#1 AGATCCTCCAGTTTTTGGTTCCCTTGGCGATATTGGGA-TTGGCTGTTGTCTGTAAGGAT 123
consensus_12141#2 C--TTCTCTCGTCCCATCTCTCATCTCATCTCTTGGTAGTTGCCAGTTGGGACTTGGGAG 77
* *** ** * * * * **** * *** * **** * ***
consensus_12141#0 CTACACCA-AGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTT 1376
consensus_12141#1 CTACACCATAGTCAGAGTCTGCTTAGTATTGTTGTCAGTCTTTCAAAAGGTCAAGAACTT 183
consensus_12141#2 AGAGAGGA--GCAGGAGGCAGGAGCAAGAGGAGGGCAAGATCGATCAAGATCAACATNTC 135
* * * * *** * * * * ** * *** **** * *
consensus_12141#0 -AATAAGTTAGTGAGGATCC--GAGGATTGCGTATTTTGTACCAGCATGGTCTGTCAT-- 1431
consensus_12141#1 -AATAAGTTAGTGAGGATCC--GAGGATTGCGTATTTTGTACCAGCATGGTCTGTCAT-- 238
consensus_12141#2 CAACAACAAGGTNCTGACCCTGGAGGAGGTCTCCAAGCACAACACCAAGGACGATTGCTG 195
** ** ** ** ** ***** * * ** ** ** * *
consensus_12141#0 GTTTGTTAT-GGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTG 1490
consensus_12141#1 GTTTGTTAT-GGTTCTAAGACTAATACTGGTAAAATGTGACTAAATCAAATGGATATTTG 297
consensus_12141#2 GCTCATCATCGGCGGCAAGGTNTACAATGTNA---------------------------- 227
* * * ** ** *** * * ** *
consensus_12141#0 ATCATATTTTCCATGGTAAAAAAAAA 1516
consensus_12141#1 ATCAAA-----------AAAAAAAA- 311
consensus_12141#2 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||