These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence [CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC-TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA-TCGTTGAGCCGGCAAAATGTCAGAAG-TGTGGGAAACGGAACG-TCCGACAGGCGTA-TCACAACGTCTGCACGGC-TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC-TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG-AGGGAGAGGCGCACACTTCTTCGCCTTAT-GAACAAAGGTGGCGGGGAGAGCGGA-CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA] [+] EMBL AK099449 [CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATAT ] [+] EMBL OSR28831A [ tgtGAAACCTTCCCGGCGGCGCGCGANTNTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACG GTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TNTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGCTTTGCTCCAAGGACCTTGGGATTTGCGCG AGTGCTTGCACTTGTGT ] [+] EMBL CF196538 [ CCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGAT ] [+] EMBL AU063124 [ ATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGTGTGNAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTG CAGCGCTTGCAAGGACCAAATCGANTGGAAGAGAAGATACGGGAAGTACAAGNCTATTCGTTGAGCCGGCAAAATGTCAGAAGTTTTGGGAAACGG ACGTTCCGACA GCGTATTCACAAC ] [+] EMBL CA756938 [ TTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA] [+] EMBL AU031371 [ AAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGA ] [+] EMBL AU031372 [ ATAAGANGTGCTAGGGAGAAGGGAGAGNCGCACACTTCTTCGCCTTATGGAACAAAGTTGNCGGGGAGAGCGGACCCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCNTCTATCAGATGTTTATCAGTGTGTGCTCCNATTCaaaaaa ] [+] EMBL AA749666 [ TTCCCTGCTGCATGGGTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCC CCAACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCT ] consensusID : consensus_12142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA] [+] EMBL AU082712 [NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA] consensusID : consensus_12142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085780 [GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12142#0 CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGG 60 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 ACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAG 120 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 CGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAG 180 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 ATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGC 240 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 CAGCGCTGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTATCGTT 300 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 GAGCCGGCAAAATGTCAGAAGTGTGGGAAACGGAACGTCCGACAGGCGTATCACAACGTC 360 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 TGCACGGCTTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGCTGCACTTGTGTTAAAGCG 420 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 CTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATA 480 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 AGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTATGAACAAAGGTGGCGGG 540 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 GAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCT 600 consensus_12142#1 ------------------------------------------------------------ consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 GCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAG-ATGAAGA 659 consensus_12142#1 ------------------------------------NCCCAAGGGAATTTNTTGTTAAGA 24 consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 AGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAA 719 consensus_12142#1 AAGGATTT--AANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCG---CAAAAA 79 consensus_12142#2 ------------------------------------------------------------ consensus_12142#0 AGGATTTATATAGCCTTATGTGGTGATTTAC-ATTACATGGTGGGTAATCCCACCCACTG 778 consensus_12142#1 AGGATTTATATAGCCTTATGTGGTGATTTANCATTACATG-TGGGTAATCCCACCCACTG 138 consensus_12142#2 ----------------------GTGATTTAC-ATTACNTGGTGGGTAATCCCCCCCACTG 37 ******** ***** ** *********** ******* consensus_12142#0 CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 838 consensus_12142#1 CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 198 consensus_12142#2 CGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTG 97 *** ********************** *************** ** ******* ** *** consensus_12142#0 TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 898 consensus_12142#1 TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 258 consensus_12142#2 TGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGC 157 ***** ****************************************** ****** **** consensus_12142#0 GGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAA 958 consensus_12142#1 GGTTTTTCCGGTTTAAAAAAAAAAAAAAA------------------------------- 287 consensus_12142#2 GGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 217 ********* ***** ********* consensus_12142#0 AAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA 1015 consensus_12142#1 --------------------------------------------------------- consensus_12142#2 AAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 241 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||