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Oryza sativa
cluster # 12142 cluster # 12142       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12142#0 length = 1015 sequences # 8  
consensus_12142#1 length = 287 sequences # 1  
consensus_12142#2 length = 241 sequences # 1  

consensusID : consensus_12142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1015
fasta sequence
                              [CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC-TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA-TCGTTGAGCCGGCAAAATGTCAGAAG-TGTGGGAAACGGAACG-TCCGACAGGCGTA-TCACAACGTCTGCACGGC-TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC-TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG-AGGGAGAGGCGCACACTTCTTCGCCTTAT-GAACAAAGGTGGCGGGGAGAGCGGA-CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA]

[+] EMBL AK099449             [CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGGACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATAT                                                                                                                                                                                                             ]
[+] EMBL OSR28831A            [                                                               tgtGAAACCTTCCCGGCGGCGCGCGANTNTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACG GTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TNTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGCTTTGCTCCAAGGACCTTGGGATTTGCGCG AGTGCTTGCACTTGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF196538             [                                                                          CCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGAT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU063124             [                                                                                                               ATGTCGAAGCGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGTGTGNAAGCCCAACCTCGGGCAGAAGATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTG CAGCGCTTGCAAGGACCAAATCGANTGGAAGAGAAGATACGGGAAGTACAAGNCTATTCGTTGAGCCGGCAAAATGTCAGAAGTTTTGGGAAACGG ACGTTCCGACA GCGTATTCACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA756938             [                                                                                                                                                                                                               TTCCGTCCTTTGTCGGAGATCACCGGCGTCTGCCAGCGC TGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA]
[+] EMBL AU031371             [                                                                                                                                                                                                                                                                                                 AAGCCTA TCGTTGAGCCGGCAAAATGTCAGAAG TGTGGGAAACGGAACG TCCGACAGGCGTA TCACAACGTCTGCACGGC TTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGC TGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAAGAGGTGCTAGGGAG AGGGAGAGGCGCACACTTCTTCGCCTTAT GAACAAAGGTGGCGGGGAGAGCGGA CCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGA                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU031372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATAAGANGTGCTAGGGAGAAGGGAGAGNCGCACACTTCTTCGCCTTATGGAACAAAGTTGNCGGGGAGAGCGGACCCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCTGCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCNTCTATCAGATGTTTATCAGTGTGTGCTCCNATTCaaaaaa                                                                                                                                                              ]
[+] EMBL AA749666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCCCTGCTGCATGGGTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAGGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCC  CCAACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCT                                                                                                                                                                                                   ]


>consensus_12142#0 CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGG ACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAG CGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAG ATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGC CAGCGCTGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTATCGTT GAGCCGGCAAAATGTCAGAAGTGTGGGAAACGGAACGTCCGACAGGCGTATCACAACGTC TGCACGGCTTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGCTGCACTTGTGTTAAAGCG CTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATA AGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTATGAACAAAGGTGGCGGG GAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCT GCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAGATGAAGAA GAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAA GGATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCG GAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTG TGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGG TTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAAAA AAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA



consensusID : consensus_12142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence
                              [NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA]

[+] EMBL AU082712             [NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA]


>consensus_12142#1 NCCCAAGGGAATTTNTTGTTAAGAAAGGATTTAANTTTTTAAGAAACCTCCAAGAAAACC CTTGNGCTTTTCGCAAAAAAGGATTTATATAGCCTTATGTGGTGATTTANCATTACATGT GGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCT ATCAGATGTTTATCAGTGTGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTG GAAAGTAGCATATATTGCGGTTTTTCCGGTTTAAAAAAAAAAAAAAA



consensusID : consensus_12142#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence
                              [GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU085780             [GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12142#2 GTGATTTACATTACNTGGTGGGTAATCCCCCCCACTGCGGNAAACAAGTGTATTAGTTTT GGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTGTGTGCNCCCATTCCGTCTGTGCT TGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGCGGTTTTTCCAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12142#0      CAGCGAGAAGGTTTTAAGGGTAGGCGGCGCCGCGGCGGAGGGGGGCTCAGCTCGAGGAGG 60
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      ACGACGGAAACCTTCCCGGCGGCGCGCGAGTCTCGCGGGGGGAGGAGAGCGATGTCGAAG 120
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      CGGCAGGGTCCCCCGAAGCATCAGAACCGCTACGCGTGGAAGCCCAACCTCGGGCAGAAG 180
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      ATCAACGAGACCGAGCCCGGCGGCAGGTTCCGTCCTTTGTCGGAGATCACCGGCGTCTGC 240
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      CAGCGCTGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTATCGTT 300
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      GAGCCGGCAAAATGTCAGAAGTGTGGGAAACGGAACGTCCGACAGGCGTATCACAACGTC 360
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      TGCACGGCTTGCTCCAAGGACCTTGGGATTTGCGCGAAGTGCTGCACTTGTGTTAAAGCG 420
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      CTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATA 480
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      AGAGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTATGAACAAAGGTGGCGGG 540
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      GAGAGCGGACCGTCGGTTCCAAAGATTGCTGACAGAAGTCGTGAAGGGGACATTTTCCCT 600
consensus_12142#1      ------------------------------------------------------------
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      GCTGCATCCCTTGACGAATATGCTGAACAAGCTAGACAGCAAGATGATTCAG-ATGAAGA 659
consensus_12142#1      ------------------------------------NCCCAAGGGAATTTNTTGTTAAGA 24
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      AGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAA 719
consensus_12142#1      AAGGATTT--AANTTTTTAAGAAACCTCCAAGAAAACCCTTGNGCTTTTCG---CAAAAA 79
consensus_12142#2      ------------------------------------------------------------
                                                                                   

consensus_12142#0      AGGATTTATATAGCCTTATGTGGTGATTTAC-ATTACATGGTGGGTAATCCCACCCACTG 778
consensus_12142#1      AGGATTTATATAGCCTTATGTGGTGATTTANCATTACATG-TGGGTAATCCCACCCACTG 138
consensus_12142#2      ----------------------GTGATTTAC-ATTACNTGGTGGGTAATCCCCCCCACTG 37
                                             ********  ***** ** *********** *******

consensus_12142#0      CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 838
consensus_12142#1      CGGAAAACAAGTGTATTAGTTTTGGCAGATATATTTCCGTCTATCAGATGTTTATCAGTG 198
consensus_12142#2      CGGNAAACAAGTGTATTAGTTTTGGCNGATATATTTCCGTCTNTCNGATGTTTNTCNGTG 97
                       *** ********************** *************** ** ******* ** ***

consensus_12142#0      TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 898
consensus_12142#1      TGTGCTCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTAGCATATATTGC 258
consensus_12142#2      TGTGCNCCCATTCCGTCTGTGCTTGTTCAAACTGAAGAATTGGAAAGTNGCATATNTTGC 157
                       ***** ****************************************** ****** ****

consensus_12142#0      GGTTTTTCCGGTTTAAAAANAAAAAAAAAANNAANNNNANNNAANAANAAAAAAAAAAAA 958
consensus_12142#1      GGTTTTTCCGGTTTAAAAAAAAAAAAAAA------------------------------- 287
consensus_12142#2      GGTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 217
                       *********     ***** *********                               

consensus_12142#0      AAAAAANNAANNNNNNNNNAACCTTGGGGGGGGGCCCGGCCCCAATTCCCCCCTTAA 1015
consensus_12142#1      ---------------------------------------------------------
consensus_12142#2      AAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 241
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)