These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 856 fasta sequence [ATGTNATTTCTTGCCAAGTGCTCTGAA-TGTCAAAA-TGAAA-AAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT-CTAATT-AGTGACG-C-GCATGAATGGATTAACGAGATT-CCC-ACTGTCCCTGTCTACTATCC-AGCGAAACCACAG-CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG-ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG-ANANG-GGCCTGGCCCCTCCTTTTGG-C-TNCNT-NA-CGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTAGGG-GCGGNCCNGNCNGGGGATCGGAAGGGAACCCCGGCGGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGCGGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCCCTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTGGCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTCGCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTTTTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTGAGCTAGTGGAAATTATATCA] [-] EMBL AU069254 [ATGTNATTTCTTGCCAAGTGCTCTGAATTGTCAAAAGTGAAG AAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCN ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TTCNTCAA CGAGTCCCTCGGGCNGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ] [-] EMBL AU069147 [ tgcCCCAGTGCTCTGAA TGTCAAAA TGAAAGAAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATTCCCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TNCNT NANCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTTGGGAGTTTGGC ] [-] EMBL AU069160 [ GTCAAAT TGAAA AAATTCAACCAAAGCCCGGGTAAACGGCGGGAAGTACCTAT NCTCTCTTAAGGTAGCCAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATTCCCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGNANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGNANATG GGCCTGGCCCCTCCTTTTGGCC TNCNT NA CAGGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ] [-] EMBL AU069121 [ tnaaTCTCTTAAGGTAGCCAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGNGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTNGGNANATG GGCCTGGCCCCTCCTTTTGGNC TNCNT AA CNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCT ] [-] EMBL AU163376 [ CGTCAT CTAATT AGTGACGCC GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAGCCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ATAGGCGGCCTGGCCCCTCCTTTTGG CATGCGT NA CANGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ] [-] EMBL OSC170 [ GTCATCCTAATTAAGTGACG CGGCATGAATGGATTAACGAGATT CCCNACTGTCCCTGTCTACTATCCAAGCGAAACCACAG CTAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TNCNT NANCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTAGGG GCGGNCCNGNCN ] [-] EMBL AU069196 [ GTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANG GGCCTGGCCCCTCCTTTTGG C TNCNT NA CAGGTCCCTCGGGCCGA ] [-] EMBL AU069143 [ GTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANAN GGCCTGGCCCCTCCTTTTGG C NTCNT CA CGAGTCCCTCGGGCCG ] [+] EMBL AK107982 [ c CGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGAGCGGCGGCGTCGGGGGATCGGAAGGGAACCCCGGCGGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGCGGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCCCTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTGGCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTCGCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTTTTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTGAGCTAGTGGAAATTATATCA] consensusID : consensus_12143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GTCATCTAATTAGTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAAACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGGCCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAA] [-] EMBL OSC195 [GTCATCTAATTAGTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAAACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGGCCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12143#0 ATGTNATTTCTTGCCAAGTGCTCTGAATGTCAAAATGAAAAAATTCAACCCAAGCGCGGG 60 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 TAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCATCTAATTA 120 consensus_12143#1 ------------------------------------------------GTCATCTAATTA 12 ************ consensus_12143#0 GTGACGCGCATGAATGGATTAA-CGAGATTCCCA-CTGTCCCTGTCTACTATCCAGCGAA 178 consensus_12143#1 GTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAA 72 ********************** ********** ************************* consensus_12143#0 ACC-ACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCT 237 consensus_12143#1 ACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCT 132 *** ******************************************************** consensus_12143#0 TGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGG 297 consensus_12143#1 TGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGG 192 ************************************************************ consensus_12143#0 CGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGANANGGG 357 consensus_12143#1 CGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGG 252 ****************************************************** * *** consensus_12143#0 CCTGGCCCCTCCTTTTGGCTNCN-TNACGAGTCCCTCGGGCCGATCCGGGCGGAAGACAT 416 consensus_12143#1 CCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACAT 312 ******************* **** ****************************** consensus_12143#0 TGTCAGGTGGGGAGTTTGGCTAGGGGCGGNCCNGNCNGGGGATCGGAAGGGAACCCCGGC 476 consensus_12143#1 TGTCAGGTGGGGAGTTTGGCT-GGGGCGGCACA-TCTGTTAA------------------ 352 ********************* ******* * * * * consensus_12143#0 GGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGC 536 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 GGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCC 596 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 CTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTG 656 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 GCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTC 716 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 GCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTT 776 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 TTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTG 836 consensus_12143#1 ------------------------------------------------------------ consensus_12143#0 AGCTAGTGGAAATTATATCA 856 consensus_12143#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||