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Oryza sativa
cluster # 1217 cluster # 1217       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1217#0 length = 1462 sequences # 2  

consensusID : consensus_1217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1462
fasta sequence
                              [CGCAGCGAGCAAACCCTAGGTTCCCCCCCCCCCCCCCTTCTCTCTCTCTCTGCGGGCGGCGGCGGCGACATCTCCCTGCGCGCCGCATCGTCTTCTTCCCAGATGGCGGACGGGGCCAACGAAGACGGTGGGGGTTCGGCTGCGGGGGAGCGGCCCATGGTTGCAATCAAGCGCAAGCGGGAGAAGGTGCCTGGGCTTGCCGAAGATGGAGATTCTTCCCCTTCTAGCGCTAATCGATCCGTCGACATGGAGGTGGAGGAGAAATTAGATTACTCTTGTGCTGGTGCCGAAGAAGATGTTAGTAGTGGATGCAGCATTGAGATGGAGGATGTGGGTGAGCAGCGGCAAGTGGAGCCCACATGGGAGGATAAGGTGCTGAGGGTTCTTCACATTGTTCGTCGCAATCAGTTTGCTGAATATGACCCCAAGGAAGGTGGGATCGTATACACCCGCTTCTGCATCCACAACATAGCCTTATTCGATCTTGACAAAGAGTCAACGATTGGGCCTGGGCCACCAATTAACTCGCTCGATCCCTCTGAATATTGGTGGCTGGATGACTCACTGAATATCATAGCGATCAAGGTTGCCGAGTCCGACGTGGGTTACCCTGTCAGAATATATGGCACCGTTCTTGCGAGGGATCAGCAAGACTACAGATGCGTCTATTTGTTCAGGCGAAGCAGGGACAATCCCCAACTCATCACCTCACCGGAGGATAGTCTAACCTTGACAGGCCCATATCGAGCACTTGCTTCAAAAGATATTATAATTTTCGAGTTCAATTTGAAGATTTTGGGCGATGGGGATGTTGACAGAGATTTCGGCAAAGGTGTGATAGAACACAGTTGTATCCGTCACACAAAGAAACTCATGACTTTAGATCTAACAAGTTGGTTGAGCAAAATAGATTTGGTTTATACGCCTGTTGATTATGCTGTAGAAGCTTCACTTGCAGTCAATATTTTGGATGGGCCATCTGATTTCACCGGTAAAGTGATTGCTTGGACTAGTGGAAATAAGGACAATGAGATCGTTCTACATGATACCCAAGTGACAGGCTCTCCAACAAAACTTGGAGATGATGGATCTATTGAGTTATCTCGTCATATAGTAGTAGTCCCATTGGATGAAGAGCTAGTGCTCAATGTTATTTTGTTTCATGGTGATGACCATGAAGACGAATGCTTTGAATTTGTTCTTACCAACTATGATGAAGAATCTAGTTTCAAAGAAGGCCGTTTTGAGCTGCAGGTGAAGGTCATCTGGACAGGCGTAGTGAGAACGGGAGAACACAAGATGTGGGAGAGCACAGGGAGAAATAGAATGTTAGTGTGATTAAGTTTAAAATCATTGGAAAGATGTTAATAGTAACCTCTCTGGAGGAGGAAATGTCTTTTGTTATCAGCATTGTAATTAAGATTCTGTTTTATGTGTACTATCTATCTAATATGAATTTGGA]

[+] EMBL AK066009             [CGCAGCGAGCAAACCCTAGGTTCCCCCCCCCCCCCCCTTCTCTCTCTCTCTGCGGGCGGCGGCGGCGACATCTCCCTGCGCGCCGCATCGTCTTCTTCCCAGATGGCGGACGGGGCCAACGAAGACGGTGGGGGTTCGGCTGCGGGGGAGCGGCCCATGGTTGCAATCAAGCGCAAGCGGGAGAAGGTGCCTGGGCTTGCCGAAGATGGAGATTCTTCCCCTTCTAGCGCTAATCGATCCGTCGACATGGAGGTGGAGGAGAAATTAGATTACTCTTGTGCTGGTGCCGAAGAAGATGTTAGTAGTGGATGCAGCATTGAGATGGAGGATGTGGGTGAGCAGCGGCAAGTGGAGCCCACATGGGAGGATAAGGTGCTGAGGGTTCTTCACATTGTTCGTCGCAATCAGTTTGCTGAATATGACCCCAAGGAAGGTGGGATCGTATACACCCGCTTCTGCATCCACAACATAGCCTTATTCGATCTTGACAAAGAGTCAACGATTGGGCCTGGGCCACCAATTAACTCGCTCGATCCCTCTGAATATTGGTGGCTGGATGACTCACTGAATATCATAGCGATCAAGGTTGCCGAGTCCGACGTGGGTTACCCTGTCAGAATATATGGCACCGTTCTTGCGAGGGATCAGCAAGACTACAGATGCGTCTATTTGTTCAGGCGAAGCAGGGACAATCCCCAACTCATCACCTCACCGGAGGATAGTCTAACCTTGACAGGCCCATATCGAGCACTTGCTTCAAAAGATATTATAATTTTCGAGTTCAATTTGAAGATTTTGGGCGATGGGGATGTTGACAGAGATTTCGGCAAAGGTGTGATAGAACACAGTTGTATCCGTCACACAAAGAAACTCATGACTTTAGATCTAACAAGTTGGTTGAGCAAAATAGATTTGGTTTATACGCCTGTTGATTATGCTGTAGAAGCTTCACTTGCAGTCAATATTTTGGATGGGCCATCTGATTTCACCGGTAAAGTGATTGCTTGGACTAGTGGAAATAAGGACAATGAGATCGTTCTACATGATACCCAAGTGACAGGCTCTCCAACAAAACTTGGAGATGATGGATCTATTGAGTTATCTCGTCATATAGTAGTAGTCCCATTGGATGAAGAGCTAGTGCTCAATGTTATTTTGTTTCATGGTGATGACCATGAAGACGAATGCTTTGAATTTGTTCTTACCAACTATGATGAAGAATCTAGTTTCAAAGAAGGCCGTTTTGAGCTGCAGGTGAAGGTCATCTGGACAGGCGTAGTGAGAACGGGAGAACACAAGATGTGGGAGAGCACAGGGAGAAATAGAATGTTAGTGTGATTAAGTTTAAAATCATTGGAAAGATGTTAATAGTAACCTCTCTGGAGGAGGAAATGTCTTTTGTTATCAGCATTGTAATTAAGATTCTGTTTTATGTGTACTATCTATCTAATATGAATTTGGA]
[+] EMBL AA752308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTCACACAAAGAAACTCATGACTTTAGATCTAACAAGTTGGTTGAGCAAAATAGATTTGGTTTATACGCCTGTTGATTATGCTGTAGAAGCTTCACTTGCAGTCAATATTTTCGATGGGCCATCTGATTTCACCGGTAAAGTGATTGCTTGGACTAGTGGAAATAAGGACAATGAGTTCGTTCTACATGA                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_1217#0 CGCAGCGAGCAAACCCTAGGTTCCCCCCCCCCCCCCCTTCTCTCTCTCTCTGCGGGCGGC GGCGGCGACATCTCCCTGCGCGCCGCATCGTCTTCTTCCCAGATGGCGGACGGGGCCAAC GAAGACGGTGGGGGTTCGGCTGCGGGGGAGCGGCCCATGGTTGCAATCAAGCGCAAGCGG GAGAAGGTGCCTGGGCTTGCCGAAGATGGAGATTCTTCCCCTTCTAGCGCTAATCGATCC GTCGACATGGAGGTGGAGGAGAAATTAGATTACTCTTGTGCTGGTGCCGAAGAAGATGTT AGTAGTGGATGCAGCATTGAGATGGAGGATGTGGGTGAGCAGCGGCAAGTGGAGCCCACA TGGGAGGATAAGGTGCTGAGGGTTCTTCACATTGTTCGTCGCAATCAGTTTGCTGAATAT GACCCCAAGGAAGGTGGGATCGTATACACCCGCTTCTGCATCCACAACATAGCCTTATTC GATCTTGACAAAGAGTCAACGATTGGGCCTGGGCCACCAATTAACTCGCTCGATCCCTCT GAATATTGGTGGCTGGATGACTCACTGAATATCATAGCGATCAAGGTTGCCGAGTCCGAC GTGGGTTACCCTGTCAGAATATATGGCACCGTTCTTGCGAGGGATCAGCAAGACTACAGA TGCGTCTATTTGTTCAGGCGAAGCAGGGACAATCCCCAACTCATCACCTCACCGGAGGAT AGTCTAACCTTGACAGGCCCATATCGAGCACTTGCTTCAAAAGATATTATAATTTTCGAG TTCAATTTGAAGATTTTGGGCGATGGGGATGTTGACAGAGATTTCGGCAAAGGTGTGATA GAACACAGTTGTATCCGTCACACAAAGAAACTCATGACTTTAGATCTAACAAGTTGGTTG AGCAAAATAGATTTGGTTTATACGCCTGTTGATTATGCTGTAGAAGCTTCACTTGCAGTC AATATTTTGGATGGGCCATCTGATTTCACCGGTAAAGTGATTGCTTGGACTAGTGGAAAT AAGGACAATGAGATCGTTCTACATGATACCCAAGTGACAGGCTCTCCAACAAAACTTGGA GATGATGGATCTATTGAGTTATCTCGTCATATAGTAGTAGTCCCATTGGATGAAGAGCTA GTGCTCAATGTTATTTTGTTTCATGGTGATGACCATGAAGACGAATGCTTTGAATTTGTT CTTACCAACTATGATGAAGAATCTAGTTTCAAAGAAGGCCGTTTTGAGCTGCAGGTGAAG GTCATCTGGACAGGCGTAGTGAGAACGGGAGAACACAAGATGTGGGAGAGCACAGGGAGA AATAGAATGTTAGTGTGATTAAGTTTAAAATCATTGGAAAGATGTTAATAGTAACCTCTC TGGAGGAGGAAATGTCTTTTGTTATCAGCATTGTAATTAAGATTCTGTTTTATGTGTACT ATCTATCTAATATGAATTTGGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)