These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1435 fasta sequence [AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA] [+] EMBL CB645946 [AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCT ] [+] EMBL AK109498 [ CGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA] consensusID : consensus_12175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1236 fasta sequence [CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT] [+] EMBL AK109488 [CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT] [+] EMBL OSS15679A [ CGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTNATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCNGTGGGATCTTntaa ] consensusID : consensus_12175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 925 fasta sequence [TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG] [+] EMBL AK067503 [TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG] [+] EMBL CB656078 [ AACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGAGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAAC ] [+] EMBL CB643447 [ CGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTG ] [+] EMBL CB665500 [ GCCGACCCTTTCACCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG] consensusID : consensus_12175#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG] [+] EMBL AK105898 [CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG] consensusID : consensus_12175#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA] [-] EMBL CB646422 [GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12175#0 ------------------------------------AACCGCAGCCGGCCAAGCCGCTCC 24 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCC 60 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 84 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 120 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 144 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 180 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 204 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 240 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 264 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 300 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 324 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 360 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 384 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 420 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 444 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 480 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 504 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 540 consensus_12175#2 ------------------------------------------------------------ consensus_12175#3 ------------------------------------------------------------ consensus_12175#0 CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 564 consensus_12175#4 ------------------------------------------------------------ consensus_12175#1 CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 600 consensus_12175#2 ----------------------------------------------------------TT 2 consensus_12175#3 -----------------------------------------------------CCCTCTT 7 consensus_12175#0 AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 624 consensus_12175#4 ------------------------------------------------------GGTGGA 6 consensus_12175#1 AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 660 consensus_12175#2 TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 62 consensus_12175#3 TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 67 ** ** consensus_12175#0 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 681 consensus_12175#4 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 63 consensus_12175#1 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 717 consensus_12175#2 AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 122 consensus_12175#3 AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 127 * ** * * ** * * * * * ** * **** ** *** ** *** consensus_12175#0 GGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 741 consensus_12175#4 GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 123 consensus_12175#1 GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 777 consensus_12175#2 GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 175 consensus_12175#3 GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 180 * ** *** * * ** ** *** *** * *** ******* consensus_12175#0 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 797 consensus_12175#4 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 179 consensus_12175#1 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 833 consensus_12175#2 CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 235 consensus_12175#3 CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 240 *** * * * ** ** **** * *** * ** * * * consensus_12175#0 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 856 consensus_12175#4 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 238 consensus_12175#1 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 892 consensus_12175#2 CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 292 consensus_12175#3 CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 297 * **** * ** * * * *** * *** *** **** ** * * * * consensus_12175#0 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 914 consensus_12175#4 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 296 consensus_12175#1 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 950 consensus_12175#2 CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 351 consensus_12175#3 CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 356 * **** * *** * *** ** * * ****** * * * consensus_12175#0 CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 973 consensus_12175#4 CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 355 consensus_12175#1 CCCTCGT-CGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGC 1009 consensus_12175#2 CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 410 consensus_12175#3 CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 415 * * * * **** * **** ** *** * * *** * ** ** ** consensus_12175#0 GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1027 consensus_12175#4 GCGGCTGCCAGACGGCGAG----------------------------------------- 374 consensus_12175#1 GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1063 consensus_12175#2 GATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGA 470 consensus_12175#3 GATGCATCCAGGCTGCGAGG---------------------------------------- 435 * ** **** * ***** consensus_12175#0 -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1074 consensus_12175#4 -------------------------------TTGTGACCTATGTTCCTGGACTGCTCATG 403 consensus_12175#1 -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1110 consensus_12175#2 TGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGC 530 consensus_12175#3 ------------------------------------------------------GTCGGC 441 ** consensus_12175#0 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1133 consensus_12175#4 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 462 consensus_12175#1 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1169 consensus_12175#2 GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 589 consensus_12175#3 GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 500 ** * * ** **** * ** ** * ** ** * * * * consensus_12175#0 CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 1192 consensus_12175#4 CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 521 consensus_12175#1 CTTAATTGTCTATTCTTTGGGTAAGAATTTCTTA--ACCGAATAACATG-TATATGTGAA 1226 consensus_12175#2 CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 649 consensus_12175#3 CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 560 ** * ** ***** * ** * * * * * consensus_12175#0 AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 1248 consensus_12175#4 AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 577 consensus_12175#1 ATAATCATAT-------------------------------------------------- 1236 consensus_12175#2 ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 709 consensus_12175#3 ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 620 * * consensus_12175#0 GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 1305 consensus_12175#4 GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 634 consensus_12175#1 ------------------------------------------------------------ consensus_12175#2 GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 769 consensus_12175#3 GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 680 consensus_12175#0 ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 1353 consensus_12175#4 ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 682 consensus_12175#1 ------------------------------------------------------------ consensus_12175#2 ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 829 consensus_12175#3 ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 740 consensus_12175#0 TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 1413 consensus_12175#4 TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 742 consensus_12175#1 ------------------------------------------------------------ consensus_12175#2 CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 889 consensus_12175#3 CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 800 consensus_12175#0 CTTTAATGAGAAGGTTCGAGCA--------------- 1435 consensus_12175#4 CTTTAATGAGAAGGTTCGAGCAA-------------- 765 consensus_12175#1 ------------------------------------- consensus_12175#2 CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 925 consensus_12175#3 CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 836 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||