Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12175 cluster # 12175       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12175#0 length = 1435 sequences # 2  
consensus_12175#1 length = 1236 sequences # 2  
consensus_12175#2 length = 925 sequences # 4  
consensus_12175#3 length = 836 sequences # 1  
consensus_12175#4 length = 765 sequences # 1  

consensusID : consensus_12175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1435
fasta sequence
                              [AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA]

[+] EMBL CB645946             [AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK109498             [                       CGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA]


>consensus_12175#0 AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGG CCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGG CGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGG GAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCG CTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAA TCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGG GAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATC CGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAG CAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCG TCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCT TCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACT CGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATC TGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGT GGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACG GGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCT GACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCA CCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTA GGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTA TATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATT GTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGT AAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGA GCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTA ACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTA AATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA



consensusID : consensus_12175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1236
fasta sequence
                              [CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT]

[+] EMBL AK109488             [CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT]
[+] EMBL OSS15679A            [                                                                                                   CGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTNATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCNGTGGGATCTTntaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_12175#1 CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCC GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA TGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGT GGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCG CTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTC TCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGC CTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGG CGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAG ACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTC ATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCT GGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTC TTAACCGAATAACATGTATATGTGAAATAATCATAT



consensusID : consensus_12175#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 925
fasta sequence
                              [TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]

[+] EMBL AK067503             [TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
[+] EMBL CB656078             [                AACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGAGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAAC                                                                                                                                                          ]
[+] EMBL CB643447             [                     CGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTG                                                                                                                                                                         ]
[+] EMBL CB665500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCGACCCTTTCACCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]


>consensus_12175#2 TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCG GGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCG GCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCC CGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGC GTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGA ATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGT CGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCA GGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGT CCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGA CCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTG CTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAG GTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGT CGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCAT CTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTG CCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGC GGCGCCTGCGGTGATCCGGTCCCTG



consensusID : consensus_12175#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 836
fasta sequence
                              [CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]

[+] EMBL AK105898             [CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]


>consensus_12175#3 CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGA CGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGG ATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCT CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG CGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGT CCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGT GGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGC ATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGC CGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCC TACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGAC CGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGC GCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGT CGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGG AGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG



consensusID : consensus_12175#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA]

[-] EMBL CB646422             [GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA]


>consensus_12175#4 GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTG GGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGT CCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGAT GTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGAT CAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCT CGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGC TGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATT GCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTT GGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGG CGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGAC TAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGG TTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACT CTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12175#0      ------------------------------------AACCGCAGCCGGCCAAGCCGCTCC 24
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCC 60
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 84
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 120
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 144
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 180
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 204
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 240
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 264
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 300
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 324
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 360
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 384
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 420
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 444
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 480
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 504
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 540
consensus_12175#2      ------------------------------------------------------------
consensus_12175#3      ------------------------------------------------------------
                                                                                   

consensus_12175#0      CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 564
consensus_12175#4      ------------------------------------------------------------
consensus_12175#1      CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 600
consensus_12175#2      ----------------------------------------------------------TT 2
consensus_12175#3      -----------------------------------------------------CCCTCTT 7
                                                                                   

consensus_12175#0      AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 624
consensus_12175#4      ------------------------------------------------------GGTGGA 6
consensus_12175#1      AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 660
consensus_12175#2      TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 62
consensus_12175#3      TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 67
                                                                             ** ** 

consensus_12175#0      TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 681
consensus_12175#4      TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 63
consensus_12175#1      TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 717
consensus_12175#2      AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 122
consensus_12175#3      AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 127
                        *  ** * *  ** *  * *   *  * **   * ****    ** ***    ** ***

consensus_12175#0      GGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 741
consensus_12175#4      GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 123
consensus_12175#1      GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 777
consensus_12175#2      GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 175
consensus_12175#3      GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 180
                       *  **   *** *  *        **       ** *** ***   * ***  *******

consensus_12175#0      TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 797
consensus_12175#4      TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 179
consensus_12175#1      TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 833
consensus_12175#2      CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 235
consensus_12175#3      CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 240
                        *** * *   *     ** **       **** * ***   *  **    *   *  * 

consensus_12175#0      TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 856
consensus_12175#4      TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 238
consensus_12175#1      TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 892
consensus_12175#2      CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 292
consensus_12175#3      CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 297
                        *  **** *  **  *  * *   ***   *  *** *** ****  **  * *  * *

consensus_12175#0      ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 914
consensus_12175#4      ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 296
consensus_12175#1      ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 950
consensus_12175#2      CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 351
consensus_12175#3      CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 356
                             *  **** * *** * ***  **  * *  ******   *      *    *  

consensus_12175#0      CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 973
consensus_12175#4      CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 355
consensus_12175#1      CCCTCGT-CGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGC 1009
consensus_12175#2      CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 410
consensus_12175#3      CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 415
                       *  * *    *  **** * **** ** *** *  * *** *     **      ** **

consensus_12175#0      GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1027
consensus_12175#4      GCGGCTGCCAGACGGCGAG----------------------------------------- 374
consensus_12175#1      GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1063
consensus_12175#2      GATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGA 470
consensus_12175#3      GATGCATCCAGGCTGCGAGG---------------------------------------- 435
                       *  **  **** * *****                                         

consensus_12175#0      -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1074
consensus_12175#4      -------------------------------TTGTGACCTATGTTCCTGGACTGCTCATG 403
consensus_12175#1      -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1110
consensus_12175#2      TGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGC 530
consensus_12175#3      ------------------------------------------------------GTCGGC 441
                                                                              **   

consensus_12175#0      TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1133
consensus_12175#4      TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 462
consensus_12175#1      TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1169
consensus_12175#2      GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 589
consensus_12175#3      GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 500
                        **   *  *  **   **** * ** ** *  ** **        *  *   *   *  

consensus_12175#0      CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 1192
consensus_12175#4      CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 521
consensus_12175#1      CTTAATTGTCTATTCTTTGGGTAAGAATTTCTTA--ACCGAATAACATG-TATATGTGAA 1226
consensus_12175#2      CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 649
consensus_12175#3      CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 560
                       ** *  **    *****         *          **  *   * *       *   *

consensus_12175#0      AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 1248
consensus_12175#4      AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 577
consensus_12175#1      ATAATCATAT-------------------------------------------------- 1236
consensus_12175#2      ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 709
consensus_12175#3      ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 620
                       * *                                                         

consensus_12175#0      GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 1305
consensus_12175#4      GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 634
consensus_12175#1      ------------------------------------------------------------
consensus_12175#2      GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 769
consensus_12175#3      GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 680
                                                                                   

consensus_12175#0      ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 1353
consensus_12175#4      ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 682
consensus_12175#1      ------------------------------------------------------------
consensus_12175#2      ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 829
consensus_12175#3      ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 740
                                                                                   

consensus_12175#0      TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 1413
consensus_12175#4      TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 742
consensus_12175#1      ------------------------------------------------------------
consensus_12175#2      CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 889
consensus_12175#3      CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 800
                                                                                   

consensus_12175#0      CTTTAATGAGAAGGTTCGAGCA--------------- 1435
consensus_12175#4      CTTTAATGAGAAGGTTCGAGCAA-------------- 765
consensus_12175#1      -------------------------------------
consensus_12175#2      CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 925
consensus_12175#3      CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 836
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)