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Oryza sativa
cluster # 12179 cluster # 12179       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12179#0 length = 2375 sequences # 8  
 consensus_12179#1 length = 1026 sequences # 1  
consensus_12179#2 length = 169 sequences # 1  
consensusID : consensus_12179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2375
fasta sequence 
                              [AGTGGAGAGGAAGGAAGAGAGGAAACCCCATTGAGGAGGAGGAGGAGATGGTGAGGCGGCGGCGGCGGTCCGTGCTGCTGCTCCTCCTCGCCCTCACGGTGCTCTCGCCGCTCGTGCTCTACACGCGCCGTCTCTCGGCGGCGCTGAACCCCAACCAGAGGAGGGATTTGCCTGGCGAAATCGTGAATCAGGGCCGTGGTGTTAAGGCTAGCAAGCTAAATGCACTTCCTCTGGAAACTGTGGGTTCTTTGAAAGAACCCGTTGGCATCGTCTTCTCGGAGGAGTCACGCGAATCTGCAAGCAAATCGACCGAACCCGATAGCCAAGAATTTCTATTGAGGAAGGCAGGGGAGCACAAGAACCGGGTGCTCTTTGAGGCCACGGCTGCTGATAGTGCCAGATCGGAAGACGATGACTTGATCGAGCAAGTGACAAGCAAGGATGGAGAAGATGATGGCTTGGCGACGGTGTCAGTTGATCAGCAGCAGATAACCACGGCATCCCAACAGCGATCTGCTTCTGAGGCAAGTTCATTGGAGAATGTGCCTGAACAGACATCCATGGAAAACTCTCTGGAAGGAAACAAAGATGGTGCTTTGCTTGATACTAGAATCCGCAATATCAGGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTCTTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAGTTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGAAGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTGTTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACAAGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACTGCCTCCCCTTG-AGGCTA-GCTAATGAATATTTTTTATTGGATCCT-AGCCA-TCAGCAATT-CCCAAACAAGGAAAAAC-TTGATGACCCCAAACTATATCACTATGCATTGTTCTCTGACAATATATTGGCAGCAGCT-GTAGTTGTTAATTCAACAGTGTTAAATGCCAAGCATCCTTCTCATCATGTCTTCCACATAGTAACTGACAGACTAAACTATGCTCCAATGAGAATGTGGTTCCTCTCTAACCCTCCTGGGAAAGCAACGATTGAAGTACGGAGTATTGAAGAGTTCACATGGCTAAATGCCAGCTACAGCCCAGTGCTGAAACAGCTCGAATCACAATCAATGATTGATTACTACTTCAGGACACATCGTGCAAACTCAGATTCAAACTTGAAGTACAGAAACCCAAAATATCTTTCTATTCTCAATCATTTGCGATTTTATCTACCTGAGATTTACCCAAATCTCCACAAGATTGTCTTTCTTGATGATGATGTAGTGATAAAGAAGGACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTT-GGTCTTGGTTACAACCC-GCATGTGAGCAGCAGAGATA-TTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCGA-TTAT-GACCAGCCCTTCCTGCGGGAGTGT-AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGAT-TTTTTTTT-AATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTCTCCTGGGGCGGAAAAATGTTATATGGTGTGATTCTCCTGTGTATGGC------A---AAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073839             [AGTGGAGAGGAAGGAAGAGAGGAAACCCCATTGAGGAGGAGGAGGAGATGGTGAGGCGGCGGCGGCGGTCCGTGCTGCTGCTCCTCCTCGCCCTCACGGTGCTCTCGCCGCTCGTGCTCTACACGCGCCGTCTCTCGGCGGCGCTGAACCCCAACCAGAGGAGGGATTTGCCTGGCGAAATCGTGAATCAGGGCCGTGGTGTTAAGGCTAGCAAGCTAAATGCACTTCCTCTGGAAACTGTGGGTTCTTTGAAAGAACCCGTTGGCATCGTCTTCTCGGAGGAGTCACGCGAATCTGCAAGCAAATCGACCGAACCCGATAGCCAAGAATTTCTATTGAGGAAGGCAGGGGAGCACAAGAACCGGGTGCTCTTTGAGGCCACGGCTGCTGATAGTGCCAGATCGGAAGACGATGACTTGATCGAGCAAGTGACAAGCAAGGATGGAGAAGATGATGGCTTGGCGACGGTGTCAGTTGATCAGCAGCAGATAACCACGGCATCCCAACAGCGATCTGCTTCTGAGGCAAGTTCATTGGAGAATGTGCCTGAACAGACATCCATGGAAAACTCTCTGGAAGGAAACAAAGATGGTGCTTTGCTTGATACTAGAATCCGCAATATCAGGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTCTTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAGTTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGAAGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTGTTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACAAGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACTGCCTCCCCTTG AGGCTA GCTAATGAATATTTTTTATTGGATCCT AGCCA TCAGCAATT CCCAAACAAGGAAAAAC TTGATGACCCCAAACTATATCACTATGCATTGTTCTCTGACAATATATTGGCAGCAGCT GTAGTTGTTAATTCAACAGTGTTAAATGCCAAGCATCCTTCTCATCATGTCTTCCACATAGTAACTGACAGACTAAACTATGCTCCAATGAGAATGTGGTTCCTCTCTAACCCTCCTGGGAAAGCAACGATTGAAGTACGGAGTATTGAAGAGTTCACATGGCTAAATGCCAGCTACAGCCCAGTGCTGAAACAGCTCGAATCACAATCAATGATTGATTACTACTTCAGGACACATCGTGCAAACTCAGATTCAAACTTGAAGTACAGAAACCCAAAATATCTTTCTATTCTCAATCATTTGCGATTTTATCTACCTGAGATTTACCCAAATCTCCACAAGATTGTCTTTCTTGATGATGATGTAGTGATAAAGAAGGACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTT GGTCTTGGTTACAACCC GCATGTGAGCAGCAGAGATA TTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCGA TTAT GACCAGCCCTTCCTGCGGGAGTGT AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGAT TTTTTTTT AATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACATGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTTTGCTGGGGCGGAAAAATGTTATATGGTGTGATTCTCCTGTGTATGGC                                ]
[+] EMBL AU070150             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTCTTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAGTTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGAAGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTGTTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACAAGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACTGCCTCCCCTTGNGGGCTAGGCTAATGGGTATTTTTTATTGGATCCT AGCCATTCAGCAATT CC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU065171             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTCTTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAGTTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGAAGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTGTTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACAAGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACTGCCTCCCCTTG AGGCTA GCTAATGAATATTTTTCATTGGATCCTAAGCCA TCAGCAATTCCCCAAACAAGGAAAAACTTTGATGACCCCAAACTATATCACTATGCA TGGTCCCTGACAATATATTGGCAGCAGCTGGTAGTTG TAATTCACCAG GGTAAATGCC AGGAT CNTCTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BU673070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTT GGTCTTGGTTACAACCC GCATGTGAGCAGCAGAGATA TTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCTG TTAT GACCAGCCCTTCCTGCGGGAGTGT AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGAT                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB964449             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGA CTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTT GGTCTTGGTTACAACCC GCATGTGAGCAGCAGAGATA TTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCTG TTAT GACCAGCCCTTCCTGCGGGAGTGT AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTCTCTAGTATTGGATg                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BU673532             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTTNGGTCTTGGTTACAACCCAGCATGTGAGCAGCAGAGATATTTGAACGTGCCGCGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CA762677             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAGATTACTATGGAAACTTGGCACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTT GGTCTTGGTTACAATCC GCATGTGAGCAGCAGAGATA TTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCGA TTAT GACCAGCCCTTCCTGCGGGAGTGT AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCCCACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGAT TTTTTTTT AATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTCTCCTGGGGCGGAAAAATGTTATATGGTGTGATTCTCCTGTGTA          A   AAAAAAAAAAAAAAA       ]
[+] EMBL BI796585             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCGATTTATGGACCAG CCTTCCTCCGGGAGTGTAAACATCAATCCTGGAAGAAAGATGGCACCTTCAATGATCCACCCGGACATAACCCATAGTTTTCCCCATTCGT GGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGATGTTTTTTTTGAATTGTAGATGTCA TTTTTAACTAGATTTCCTT CCACCTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATAT GTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTCTCCTGGGGCGGAAAAATGTTATATGGTGTGATTCTCCTGTGTATGGCCTTTTTATCTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12179#0
AGTGGAGAGGAAGGAAGAGAGGAAACCCCATTGAGGAGGAGGAGGAGATGGTGAGGCGGC
GGCGGCGGTCCGTGCTGCTGCTCCTCCTCGCCCTCACGGTGCTCTCGCCGCTCGTGCTCT
ACACGCGCCGTCTCTCGGCGGCGCTGAACCCCAACCAGAGGAGGGATTTGCCTGGCGAAA
TCGTGAATCAGGGCCGTGGTGTTAAGGCTAGCAAGCTAAATGCACTTCCTCTGGAAACTG
TGGGTTCTTTGAAAGAACCCGTTGGCATCGTCTTCTCGGAGGAGTCACGCGAATCTGCAA
GCAAATCGACCGAACCCGATAGCCAAGAATTTCTATTGAGGAAGGCAGGGGAGCACAAGA
ACCGGGTGCTCTTTGAGGCCACGGCTGCTGATAGTGCCAGATCGGAAGACGATGACTTGA
TCGAGCAAGTGACAAGCAAGGATGGAGAAGATGATGGCTTGGCGACGGTGTCAGTTGATC
AGCAGCAGATAACCACGGCATCCCAACAGCGATCTGCTTCTGAGGCAAGTTCATTGGAGA
ATGTGCCTGAACAGACATCCATGGAAAACTCTCTGGAAGGAAACAAAGATGGTGCTTTGC
TTGATACTAGAATCCGCAATATCAGGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTC
TTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAG
TTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGA
AGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTG
TTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACA
AGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACT
GCCTCCCCTTGAGGCTAGCTAATGAATATTTTTTATTGGATCCTAGCCATCAGCAATTCC
CAAACAAGGAAAAACTTGATGACCCCAAACTATATCACTATGCATTGTTCTCTGACAATA
TATTGGCAGCAGCTGTAGTTGTTAATTCAACAGTGTTAAATGCCAAGCATCCTTCTCATC
ATGTCTTCCACATAGTAACTGACAGACTAAACTATGCTCCAATGAGAATGTGGTTCCTCT
CTAACCCTCCTGGGAAAGCAACGATTGAAGTACGGAGTATTGAAGAGTTCACATGGCTAA
ATGCCAGCTACAGCCCAGTGCTGAAACAGCTCGAATCACAATCAATGATTGATTACTACT
TCAGGACACATCGTGCAAACTCAGATTCAAACTTGAAGTACAGAAACCCAAAATATCTTT
CTATTCTCAATCATTTGCGATTTTATCTACCTGAGATTTACCCAAATCTCCACAAGATTG
TCTTTCTTGATGATGATGTAGTGATAAAGAAGGACCTAACCAGCCTCTGGTCAATTGATA
TGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATC
GTTACCTTAATTTCTCAAATCCTGTCATTGTGAAGAATTTTGACCCCCATGCATGTGGAT
GGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACATAACTGAAA
TCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGC
CTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCC
TTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAACGTGCCGCGGTCATAC
ATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACT
GGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGTAACATCAATCCTTGAA
GAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGG
TCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGATTTTTTTTTAATTGTAGATG
TCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTGCATAACTG
CAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAATGTTAAAT
AGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTT
GTAGATGTTTTGAGACTGCATTCTCTCCTGGGGCGGAAAAATGTTATATGGTGTGATTCT
CCTGTGTATGGCAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1026
fasta sequence 
                              [CAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTACACGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGTAACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACANTAACCAATAGTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTNGATTGATTTTTTTTTAATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGCGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTNTAATCCCTACTTTTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTTTCCTGTGCGGAAAAATGTAATATGGTGTATTCTCCTGTGTATGGCCTTTTAATTACCTGAAAGTTTGTGCATTGCAACTTGACAAAAACATAATCTAAAATATACCATTTCTTAATATATCCTCCCCTTCGGCTCATACTCTCCCTTCCTGTGGATGCCGGTTCATACTNTATACTTATTTTTTCCTTGGTGGGGGGCGCCCGCCCACAATCTCCTCTTTAGTGGGTTTTATCCCCGCCTCCTCGGCCTTTTTACAAATTGGGGGGGAAAAACCGTGGCTCCCCAATAAAATTCTTGGAAAATATCCTCTTCACATTTGGTGAATAACAAGAACCCCCCACATTCCTTCCTTCAGGTGGGCCTACTGATGGGAGTGGCCCCCTTT]

[+] EMBL BE040125             [CAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGGCACTCTGCCTACACGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATGGCATGTCCTTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGTAACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACANTAACCAATAGTTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTNGATTGATTTTTTTTTAATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGCGGCAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTNTAATCCCTACTTTTGCATAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTTTCCTGTGCGGAAAAATGTAATATGGTGTATTCTCCTGTGTATGGCCTTTTAATTACCTGAAAGTTTGTGCATTGCAACTTGACAAAAACATAATCTAAAATATACCATTTCTTAATATATCCTCCCCTTCGGCTCATACTCTCCCTTCCTGTGGATGCCGGTTCATACTNTATACTTATTTTTTCCTTGGTGGGGGGCGCCCGCCCACAATCTCCTCTTTAGTGGGTTTTATCCCCGCCTCCTCGGCCTTTTTACAAATTGGGGGGGAAAAACCGTGGCTCCCCAATAAAATTCTTGGAAAATATCCTCTTCACATTTGGTGAATAACAAGAACCCCCCACATTCCTTCCTTCAGGTGGGCCTACTGATGGGAGTGGCCCCCTTT]




>consensus_12179#1
CAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGG
AAACTTGGCACTCTGCCTACACGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAAT
CGTTCATGGCATGTCCTTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAA
CGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCC
AAATTCCGAAACTACTGGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGT
AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACANTAACCAATAG
TTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTNGATTGATTTT
TTTTTAATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCC
TACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGCGG
CAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTNTAATCCCTACTTTTGCA
TAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTTTCCTGTGCGGAAAAATGTA
ATATGGTGTATTCTCCTGTGTATGGCCTTTTAATTACCTGAAAGTTTGTGCATTGCAACT
TGACAAAAACATAATCTAAAATATACCATTTCTTAATATATCCTCCCCTTCGGCTCATAC
TCTCCCTTCCTGTGGATGCCGGTTCATACTNTATACTTATTTTTTCCTTGGTGGGGGGCG
CCCGCCCACAATCTCCTCTTTAGTGGGTTTTATCCCCGCCTCCTCGGCCTTTTTACAAAT
TGGGGGGGAAAAACCGTGGCTCCCCAATAAAATTCTTGGAAAATATCCTCTTCACATTTG
GTGAATAACAAGAACCCCCCACATTCCTTCCTTCAGGTGGGCCTACTGATGGGAGTGGCC
CCCTTT

consensusID : consensus_12179#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence 
                              [AAGGGAATAGCTGGGCGCTCTAACATCAGAATGGGATAAAGAAGGACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATTTCCTGTCATTGTGAAG]

[+] EMBL CB967145             [AAGGGAATAGCTGGGCGCTCTAACATCAGAATGGGATAAAGAAGGACCTAACCAGCCTCTGGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCCATCGTTTTGATCGTTACCTTAATTTCTCAAATTTCCTGTCATTGTGAAG]




>consensus_12179#2
AAGGGAATAGCTGGGCGCTCTAACATCAGAATGGGATAAAGAAGGACCTAACCAGCCTCT
GGTCAATTGATATGAAGGGGAAAGTAATTGGTGTTGTAGAGACTTGTGGAGAGAGCTTCC
ATCGTTTTGATCGTTACCTTAATTTCTCAAATTTCCTGTCATTGTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12179#0      AGTGGAGAGGAAGGAAGAGAGGAAACCCCATTGAGGAGGAGGAGGAGATGGTGAGGCGGC 60
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GGCGGCGGTCCGTGCTGCTGCTCCTCCTCGCCCTCACGGTGCTCTCGCCGCTCGTGCTCT 120
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      ACACGCGCCGTCTCTCGGCGGCGCTGAACCCCAACCAGAGGAGGGATTTGCCTGGCGAAA 180
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TCGTGAATCAGGGCCGTGGTGTTAAGGCTAGCAAGCTAAATGCACTTCCTCTGGAAACTG 240
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TGGGTTCTTTGAAAGAACCCGTTGGCATCGTCTTCTCGGAGGAGTCACGCGAATCTGCAA 300
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GCAAATCGACCGAACCCGATAGCCAAGAATTTCTATTGAGGAAGGCAGGGGAGCACAAGA 360
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      ACCGGGTGCTCTTTGAGGCCACGGCTGCTGATAGTGCCAGATCGGAAGACGATGACTTGA 420
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TCGAGCAAGTGACAAGCAAGGATGGAGAAGATGATGGCTTGGCGACGGTGTCAGTTGATC 480
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      AGCAGCAGATAACCACGGCATCCCAACAGCGATCTGCTTCTGAGGCAAGTTCATTGGAGA 540
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      ATGTGCCTGAACAGACATCCATGGAAAACTCTCTGGAAGGAAACAAAGATGGTGCTTTGC 600
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TTGATACTAGAATCCGCAATATCAGGGATCTGTTAATCAAGGCAAAGGTCTACCTTGGTC 660
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      CAGAACATAACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGG 60
                                                                                   

consensus_12179#0      TTGGAGCCATTCGAGCAAATCCCCAGTACCTCAAAGACTTGAGGCAGCGGATTCGGGAAG 720
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      AAACTTGGCACTCTGCCTACACGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAAT 120
                                                                                   

consensus_12179#0      TTCAAAAGGTTCTTGGTGATGCATCCAAGGACTCCGATCTACCCAAGAATGCCAATGAGA 780
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      CGTTCATGGCATGTCCTTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAA 180
                                                                                   

consensus_12179#0      AGGTGAAAACACTTGAGCAGACACTGATCAAGGGAAAACTGATGCAGGATGATTGTTCTG 840
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      CGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCC 240
                                                                                   

consensus_12179#0      TTGTTGTCAAAAAGCTTCGAGCTATGCTTCACTCAGCTGAGGAGCAACTGCATGCACACA 900
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      AAATTCCGAAACTACTGGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGT 300
                                                                                   

consensus_12179#0      AGAAGCAAACTGTTTTCCTAACACAACTTGCAGCCAAAACCCTTCCCAAGGGTCTTCACT 960
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      AACATCAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACANTAACCAATAG 360
                                                                                   

consensus_12179#0      GCCTCCCCTTGAGGCTAGCTAATGAATATTTTTTATTGGATCCTAGCCATCAGCAATTCC 1020
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      TTTCCCCATTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTNGATTGATTTT 420
                                                                                   

consensus_12179#0      CAAACAAGGAAAAACTTGATGACCCCAAACTATATCACTATGCATTGTTCTCTGACAATA 1080
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      TTTTTAATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCC 480
                                                                                   

consensus_12179#0      TATTGGCAGCAGCTGTAGTTGTTAATTCAACAGTGTTAAATGCCAAGCATCCTTCTCATC 1140
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      TACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGCGG 540
                                                                                   

consensus_12179#0      ATGTCTTCCACATAGTAACTGACAGACTAAACTATGCTCCAATGAGAATGTGGTTCCTCT 1200
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      CAGGAAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTNTAATCCCTACTTTTGCA 600
                                                                                   

consensus_12179#0      CTAACCCTCCTGGGAAAGCAACGATTGAAGTACGGAGTATTGAAGAGTTCACATGGCTAA 1260
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      TAACTGCAGATAAGTTGTAGATGTTTTGAGACTGCATTCTTTCCTGTGCGGAAAAATGTA 660
                                                                                   

consensus_12179#0      ATGCCAGCTACAGCCCAGTGCTGAAACAGCTCGAATCACAATCAATGATTGATTACTACT 1320
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ATATGGTGTATTCTCCTGTGTATGGCCTTTTAATTACCTGAAAGTTTGTGCATTGCAACT 720
                                                                                   

consensus_12179#0      TCAGGACACATCGTGCAAACTCAGATTCAAACTTGAAGTACAGAAACCCAAAATATCTTT 1380
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      TGACAAAAACATAATCTAAAATATACCATTTCTTAATATATCCTCCCCTTCGGCTCATAC 780
                                                                                   

consensus_12179#0      CTATTCTCAATCATTTGCGATTTTATCTACCTGAGATTTACCCAAATCTCCACAAGATTG 1440
consensus_12179#2      ---------------------------------------------------AAGGGAATA 9
consensus_12179#1      TCTCCCTTCCTGTGGATGCCGGTTCATACTNTATACTTATTTTTTCCTTGGTGGGGGGCG 840
                                                                              *    

consensus_12179#0      TCT---TTCTTGATGATGAT-GTAGTGATAAAGAAGGACCTAACCAGCCTCTGGTCAATT 1496
consensus_12179#2      GCTGGGCGCTCTAACATCAG-AATGGGATAAAGAAGGACCTAACCAGCCTCTGGTCAATT 68
consensus_12179#1      CCCGCCCACAATCTCCTCTTTAGTGGGTTTTATCCCCGCCTCCTCGGCCTTTTTACAA-- 898
                        *      *       *       * * *  *      ***   * **** *   ***  

consensus_12179#0      GATATGAAGGGGAAAGTAATTGGTGTTGTA-GAGACTTGTGGAGAGAGCTTCCATCGT-T 1554
consensus_12179#2      GATATGAAGGGGAAAGTAATTGGTGTTGTA-GAGACTTGTGGAGAGAGCTTCCATCGT-T 126
consensus_12179#1      -ATTGGGGGGGAAAAACCGTGGCTCCCCAATAAAATTCTTGGAAAATATCCTCTTCACAT 957
                        **  *  *** ***    * * *     *  * * *  **** *       * **   *

consensus_12179#0      TTGATCGTTACCTTAATTTCTCAAAT--CCTGTCATTGTGAAGAATTTTGACCCCCATGC 1612
consensus_12179#2      TTGATCGTTACCTTAATTTCTCAAATTTCCTGTCATTGTGAAG----------------- 169
consensus_12179#1      TTGGTGAATAACAAGAACCCCCCACATTCCTTCCTTCAGGTGGGCCTACTGATGGGAGTG 1017
                       *** *   ** *   *   * * *    ***  * *   *  *                 

consensus_12179#0      ATGTGGATGGGCTTTTGGAATGAATGTCTTTGATCTGGCTGAATGGAGGCGGCAGAACAT 1672
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      GCCCCCTTT--------------------------------------------------- 1026
                                                                                   

consensus_12179#0      AACTGAAATCTATCACTCCTGGCAAAAGCTTAATCAGGACAGATTACTATGGAAACTTGG 1732
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      CACTCTGCCTCCAGGTTTGATTACATTCTGGAATAAGACGCTTCCCCTCAATCGTTCATG 1792
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GCATGTCCTTGGTCTTGGTTACAACCCGCATGTGAGCAGCAGAGATATTGAACGTGCCGC 1852
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GGTCATACATTACAATGGCAATATGAAGCCTTGGCTGGAGATTGGTCTGCCCAAATTCCG 1912
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      AAACTACTGGTCGGCATACCTCGATTATGACCAGCCCTTCCTGCGGGAGTGTAACATCAA 1972
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCA 2032
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TTCGTGGGTCTTGTGCTCTTTAGTTTAGTTTTTCTAGTATTTGATTGATTTTTTTTTAAT 2092
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCACCTGTCCTTTGTATCCCTACTTCTG 2152
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      CATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGGAAAA 2212
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      TGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCA 2272
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GATAAGTTGTAGATGTTTTGAGACTGCATTCTCTCCTGGGGCGGAAAAATGTTATATGGT 2332
consensus_12179#2      ------------------------------------------------------------
consensus_12179#1      ------------------------------------------------------------
                                                                                   

consensus_12179#0      GTGATTCTCCTGTGTATGGCAAAAAAAAAAAAAAAAAAAAAAA 2375
consensus_12179#2      -------------------------------------------
consensus_12179#1      -------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)