cluster # 12180

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12180 cluster # 12180 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12180#0 length = 940 sequences # 9

consensus_12180#1 length = 274 sequences # 1

consensusID : consensus_12180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 940
fasta sequence

                              [CCTCTCCCGGAATGGAAACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA-GCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG-GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG-ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC-TTCTCCCGCAACTGGCCCAGGTATAGGA-GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA-CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG-CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB684911             [CCTCTCCCGGAATGGAAACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA GCTGGGCGCGTGTCCCTTCCACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCCTTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCTCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCCGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCACGGCCTGATGTTATTGATGTGGA                                                                                                                                                                                                                                         ]
[+] EMBL CB664973             [        GGAATCG TACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA GCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGA                                                                                                                                                                                                                       ]
[+] EMBL C73494               [                      CGCGCGGTGGCGTCCACCGCNGCCGCCG  GGCANNCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGA CGNGACCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCA  GCCTGTGACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGGCCGCGGGCNCNGTGCGGAGAATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGACTTTCTTCCGCAACTGGCCCAGGTATAGGAGGGGAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB684912             [                                                                                                                                                                                                   CGGTTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGCCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTAAGGTGAAATTTGAATAAAA                                                                      ]
[+] EMBL AU091366             [                                                                                                                                                                                                                                                                                         CCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGNCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAA                       ]
[+] EMBL AU165729             [                                                                                                                                                                                                                                                                                           GCCCGCGCGCGCNCCGTCAAG ATCGACGCCGAGCTCGGCATCGGCCGCCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAA                                                ]
[-] EMBL AW069940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cccgaGGTACATTTGTCTTGCCTTTTGGTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGCAAGTTTGTGATATG C                                                                                                                                          ]
[+] EMBL AU161387             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAAAAAAAAAAAAAAAAAAAAAAA                                 ]
[+] EMBL AU197981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAACCGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATGCCGGGTTTGTACGTAGTTATTCTTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12180#0
CCTCTCCCGGAATGGAAACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCAGCTG
GGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGC
GCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCA
ACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTGGACGGGA
GGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCG
AGATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGACTTCTCCC
GCAACTGGCCCAGGTATAGGAGGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAG
CTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCA
TTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATC
GGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACC
AAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTG
GACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGA
AGTAAGAACATGTTGTTACAACGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGAT
AGGCTGGAAGTTTGTGATATGCGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTA
CATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAAAAAAAAAA
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCGCCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGACGTGNCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTTGCGGGGCGCAACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAACGCGCAGCCTTGGAACGGGAGGTTCTCNAATCGAGGCGCTTGG]

[+] EMBL C74276               [CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCGCCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGACGTGNCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTTGCGGGGCGCAACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAACGCGCAGCCTTGGAACGGGAGGTTCTCNAATCGAGGCGCTTGG]




>consensus_12180#1
CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCG
CCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGACGTGNCCGCCA
CGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGT
TGCGGGGCGCAACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAACGCGCAGCC
TTGGAACGGGAGGTTCTCNAATCGAGGCGCTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12180#0      -----CCTCTCCCGGAATGGAAAC--GTTCGCGCGGT------GGCGTCCACCGCCGCCG 47
consensus_12180#1      CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCG 60
                                     **    ****  ***    ***        ********** *****

consensus_12180#0      CCGGCGGCAGCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCC 107
consensus_12180#1      CCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGA-CGTGNCCGCC 119
                       ****      *************************************** *  * *****

consensus_12180#0      ACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCG 167
consensus_12180#1      ACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCG 179
                       ************************************************************

consensus_12180#0      TGGCGGGGCGCCAACGCCGGC-GCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCA 226
consensus_12180#1      TTGCGGGGCGC-AACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAAC-GCGCA 237
                       * ********* ********  ***** ************** ****** * ** *****

consensus_12180#0      GCGCCTGGACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCG 286
consensus_12180#1      GCCTTGGAACGGGAGGTTCTCNA-ATCGAGGCGCTTGG---------------------- 274
                       **    * ************* * ********** ***                      

consensus_12180#0      CGCGCGCGCCGTCGAGATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTC 346
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      CGTCGACTTCTCCCGCAACTGGCCCAGGTATAGGAGGGAGCTGACTGACTTCATGGCCAC 406
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      ACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCT 466
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      ATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGG 526
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      GACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGT 586
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      GGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAA 646
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      CAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGT 706
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      GGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAACGTGCACCAGCAACTTAGGGAGGGG 766
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      AAGAATGAGAAGATAGGCTGGAAGTTTGTGATATGCGGGTTTGTACGTAGTTATTCGTGC 826
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      AATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAT 886
consensus_12180#1      ------------------------------------------------------------
                                                                                   

consensus_12180#0      TAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 940
consensus_12180#1      ------------------------------------------------------