These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 940 fasta sequence [CCTCTCCCGGAATGGAAACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA-GCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG-GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG-ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC-TTCTCCCGCAACTGGCCCAGGTATAGGA-GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA-CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG-CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB684911 [CCTCTCCCGGAATGGAAACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA GCTGGGCGCGTGTCCCTTCCACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCCTTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCTCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCCGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCACGGCCTGATGTTATTGATGTGGA ] [+] EMBL CB664973 [ GGAATCG TACGTTCGCGCGGTGGCGTCCACCGCCGCCGCCGGCGGCA GCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGA ] [+] EMBL C73494 [ CGCGCGGTGGCGTCCACCGCNGCCGCCG GGCANNCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGA CGNGACCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTGGCGGGGCGCCAACGCCGGCGCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCA GCCTGTGACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGGCCGCGGGCNCNGTGCGGAGAATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGACTTTCTTCCGCAACTGGCCCAGGTATAGGAGGGGAGCT ] [-] EMBL CB684912 [ CGGTTCGCGTTCGAGGTGCGCCAGACCGCGCAGCGCCTG GACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGCCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTAAGGTGAAATTTGAATAAAA ] [+] EMBL AU091366 [ CCGCCCGCGCGCGCGCCGTCGAG ATCGACGCCGAGCTCGGCATCGGCCGNCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAA ] [+] EMBL AU165729 [ GCCCGCGCGCGCNCCGTCAAG ATCGACGCCGAGCTCGGCATCGGCCGCCGGTGGCGCTCCTTCTCCGTCGAC TTCTCCCGCAACTGGCCCAGGTATAGGA GGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAATTAAAAA ] [-] EMBL AW069940 [ cccgaGGTACATTTGTCTTGCCTTTTGGTGCGCCACTTCTCCTTGGGACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGCAAGTTTGTGATATG C ] [+] EMBL AU161387 [ AGAAGCTCAGGGCCTGATGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAA CGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATG CGGGTTTGTACGTAGTTATTCGTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU197981 [ TGTTATTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAACCGTGCACCAGCAACTTAGGGAGGGGAAGAATGAGAAGATAGGCTGGAAGTTTGTGATATGCCGGGTTTGTACGTAGTTATTCTTGCAATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCGCCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGACGTGNCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTTGCGGGGCGCAACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAACGCGCAGCCTTGGAACGGGAGGTTCTCNAATCGAGGCGCTTGG] [+] EMBL C74276 [CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCGCCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGACGTGNCCGCCACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCGTTGCGGGGCGCAACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAACGCGCAGCCTTGGAACGGGAGGTTCTCNAATCGAGGCGCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12180#0 -----CCTCTCCCGGAATGGAAAC--GTTCGCGCGGT------GGCGTCCACCGCCGCCG 47 consensus_12180#1 CAGGNGNNANANTNGAGNANAAACTGGTTTCTNCGGCCGGGTGNGCGTCCACCGACGCCG 60 ** **** *** *** ********** ***** consensus_12180#0 CCGGCGGCAGCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGAGCCGGGCCGCC 107 consensus_12180#1 CCGGGCAAGCCTGGGCGCGTGTCCCTTCGACCGGCGTACGGGAGGCGGA-CGTGNCCGCC 119 **** *************************************** * * ***** consensus_12180#0 ACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCG 167 consensus_12180#1 ACGGTCTCCCCGCGCGCGTTCGGCGGCGGCGCTGACTTCGACGGCTTCGTGCGGCGGGCG 179 ************************************************************ consensus_12180#0 TGGCGGGGCGCCAACGCCGGC-GCCGAGCGGCTCGCGTTCGAGGTGCGCCAGACCGCGCA 226 consensus_12180#1 TTGCGGGGCGC-AACGCCGGTTGCCGAACGGCTCGCGTTCGAAGTGCGCAAAAC-GCGCA 237 * ********* ******** ***** ************** ****** * ** ***** consensus_12180#0 GCGCCTGGACGGGAGGTTCTCGATATCGAGGCGCCTGGCCGAGGCCGCGCGCGCCGCCCG 286 consensus_12180#1 GCCTTGGAACGGGAGGTTCTCNA-ATCGAGGCGCTTGG---------------------- 274 ** * ************* * ********** *** consensus_12180#0 CGCGCGCGCCGTCGAGATCGACGCCGAGCTCGGCATCGGCCGGCGGTGGCGCTCCTTCTC 346 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 CGTCGACTTCTCCCGCAACTGGCCCAGGTATAGGAGGGAGCTGACTGACTTCATGGCCAC 406 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 ACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAGGATGGCT 466 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 ATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGG 526 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 GACATTTGGTAATCGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGT 586 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 GGGTTACCGCAACCAAGTGATTCGGTGCATGAATTGCCAAAACATAGTGTGGCAGCCAAA 646 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 CAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTATTGATGT 706 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 GGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAACGTGCACCAGCAACTTAGGGAGGGG 766 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 AAGAATGAGAAGATAGGCTGGAAGTTTGTGATATGCGGGTTTGTACGTAGTTATTCGTGC 826 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 AATTGTGTGTTGTACATTATGTGTTCTTTGAAATTTGAATAAAACGAAGCTTCGCCAAAT 886 consensus_12180#1 ------------------------------------------------------------ consensus_12180#0 TAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 940 consensus_12180#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||