Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12205 cluster # 12205       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12205#0 length = 2311 sequences # 7  
consensus_12205#1 length = 601 sequences # 3  

consensusID : consensus_12205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2311
fasta sequence
                              [GACACGCCGAGAAGAAAAAAAAAAGAAAAAAAAGCAACGAACCAACTTTTCTCCCAAGGAAACTTCTCCACTTCTCTCCTCGCTTCCGCCGCCTCCTCCGCCGCCGCCGACATGGACACCACGATCGGCTCGGTGCCGACGGCCTCCGATGCGGCGGCGCCTGCCCCCGCGGCGAACTCCGCGCCGAGGGAGGCCACGCTGGGGCGGCACCTCGCGCGGCGGCTGGCGGAGGTCGGGGCGCGCGACGTGTTCACGGTGCCGGGGGACTTCAACCTCACGCTGCTCGACGAGCTCGAGGCGGAGGCGGGGGCGGGGCACGGCGGGGTGCGGCTCGTCGGGTGCTGCAACGAGCTCAACGCGGCGTACGCCGCCGACGGGTACGCCCGCGCGCGCGGCGGCGGGGTCGGGGCGTGCGCCGTCACGTTCACCGTCGGTGGCCTCAGCGCCATCAACGCCGTCGCCGGCGCGTTCAGCGAGAACCTCCCCGTGGTGTGCATCGTTGGGGGCCCCAACAGCAACGACTACGGGAGCAACCGCATCCTGCATCACACCATCGGGCTGCCTGATTTCACGCAGGAGCTCAGGTGCTTCCAGACTGTCACTTGCTATCAGGCGGTGGTGAACAACTTGGAGGATGCACATGAGCAGATTGATGCTGCCATCTCCACTGCAATAAAGGAGAGCAAGCCTGTTTACATAAGCATCAGCTGCAACCTCCCCTCTATCCCACATCCCACCTTTAGCCGCCACCCTGTTCCTTTCTTCCTGTCCCCAAGATTATCAAACCAGATGAACCTGGAGACAGCAGTGGAAACTGCTGCAGCTTTCCTGAACAAAGCAGTCAAGCCAGTCCTCGTTGGTGGACCAAAAATGAGGGTGGCCAAAGCATGCAAATCCTTCGTAGAGCTGGCTGATGCCTGTGGTTATCCTGTTGCGGTCATGCCTTCTGCAAAGGGTCTTGTGCCAGAGCACCATCCTAGGTTTATTGGCACGTACTGGGGTGCTGTGAGCACTCCATTTTGTGCTGAGATCGTCGAGTCAGCTGATGCATATCTATTTGCTGGCCCAATATTTAATGACTACAGCTCGGTTGGATACTCACTACTTCTCAAGAAGGAGAAGGCCATCATCGTCCAGCCAGACCGGGTGGTGATAGGTCATGGGCCTGCGTTTGGGTGTGTTCTGATGAAGGACTTCCTGCATGCACTTTCAGCACGGCTGAAGAAAAACACGGCTGCATATGAGAACTATCGTCGGATTTATGTGCCTCCGGGTGAACCTCCTTTGTCTGAGCCTGGAGAGCCATTGAGAGTGAATGTACTTTTCCAGCATATTCAGAAAATGTTGTCAGCCAACTCGGCTGTCATTGCTGAGACTGGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATCGGAGATGGAAGCTTTCAGGTGACGGCACAAGAAGTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAATGGAGGGTACACCATCGAGGTGGAGATCCA-TGACGGTCCTTACAATGTCATCAAGAATTGGAACTACACCGGTGTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTACA-CGGCAAAGGTCCGAA-CTGAGGAGGAACTGAAG-GAA-GCAATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA-CAAGGATGACACA-AGTAAGGAGCTTCTTGAGTGGGGCTCCA-GAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCA-GTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGT-GTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGT-CAATAAATCTGAAATCGATTTTT-GGTTGCCCTACCAAAAAAAAAATGACTGACTTTGCATTGTACATGGGATCTAGTTGTTCTGGAGAGTCAGGAACAGGTTTGAGGCTTCCCTTGATTGTCAACCAATGAGAACAGCATCTCTCATTAAAAAAACAGGCTAAACGAATAGATCAATTTCTGTTTGAGAAAAAATGGTTCCATGAAGTTCAAACTTGAATGTTTCAATAAGATTAAGTATTTGTTTTTTCCGGCACGAG]

[+] EMBL AK069905             [GACACGCCGAGAAGAAAAAAAAAAGAAAAAAAAGCAACGAACCAACTTTTCTCCCAAGGAAACTTCTCCACTTCTCTCCTCGCTTCCGCCGCCTCCTCCGCCGCCGCCGACATGGACACCACGATCGGCTCGGTGCCGACGGCCTCCGATGCGGCGGCGCCTGCCCCCGCGGCGAACTCCGCGCCGAGGGAGGCCACGCTGGGGCGGCACCTCGCGCGGCGGCTGGCGGAGGTCGGGGCGCGCGACGTGTTCACGGTGCCGGGGGACTTCAACCTCACGCTGCTCGACGAGCTCGAGGCGGAGGCGGGGGCGGGGCACGGCGGGGTGCGGCTCGTCGGGTGCTGCAACGAGCTCAACGCGGCGTACGCCGCCGACGGGTACGCCCGCGCGCGCGGCGGCGGGGTCGGGGCGTGCGCCGTCACGTTCACCGTCGGTGGCCTCAGCGCCATCAACGCCGTCGCCGGCGCGTTCAGCGAGAACCTCCCCGTGGTGTGCATCGTTGGGGGCCCCAACAGCAACGACTACGGGAGCAACCGCATCCTGCATCACACCATCGGGCTGCCTGATTTCACGCAGGAGCTCAGGTGCTTCCAGACTGTCACTTGCTATCAGGCGGTGGTGAACAACTTGGAGGATGCACATGAGCAGATTGATGCTGCCATCTCCACTGCAATAAAGGAGAGCAAGCCTGTTTACATAAGCATCAGCTGCAACCTCCCCTCTATCCCACATCCCACCTTTAGCCGCCACCCTGTTCCTTTCTTCCTGTCCCCAAGATTATCAAACCAGATGAACCTGGAGACAGCAGTGGAAACTGCTGCAGCTTTCCTGAACAAAGCAGTCAAGCCAGTCCTCGTTGGTGGACCAAAAATGAGGGTGGCCAAAGCATGCAAATCCTTCGTAGAGCTGGCTGATGCCTGTGGTTATCCTGTTGCGGTCATGCCTTCTGCAAAGGGTCTTGTGCCAGAGCACCATCCTAGGTTTATTGGCACGTACTGGGGTGCTGTGAGCACTCCATTTTGTGCTGAGATCGTCGAGTCAGCTGATGCATATCTATTTGCTGGCCCAATATTTAATGACTACAGCTCGGTTGGATACTCACTACTTCTCAAGAAGGAGAAGGCCATCATCGTCCAGCCAGACCGGGTGGTGATAGGTCATGGGCCTGCGTTTGGGTGTGTTCTGATGAAGGACTTCCTGCATGCACTTTCAGCACGGCTGAAGAAAAACACGGCTGCATATGAGAACTATCGTCGGATTTATGTGCCTCCGGGTGAACCTCCTTTGTCTGAGCCTGGAGAGCCATTGAGAGTGAATGTACTTTTCCAGCATATTCAGAAAATGTTGTCAGCCAACTCGGCTGTCATTGCTGAGACTGGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATCGGAGATGGAAGCTTTCAGGTGACGGCACAAGAAGTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAATGGAGGGTACACCATCGAGGTGGAGATCCA TGACGGTCCTTACAATGTCATCAAGAATTGGAACTACACCGGTGTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTACA CGGCAAAGGTCCGAA CTGAGGAGGAACTGAAG GAA GCAATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA CAAGGATGACACA AGTAAGGAGCTTCTTGAGTGGGGCTCCA GAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCA GTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGT GTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGT CAATAAATCTGAAATCGATTTTT GG                                                                                                                                                                                                                                          ]
[+] EMBL CB638280             [                                AGCAACGAACCAACTTTTCTCCCAAGGAAACTTCTCCACTTCTCTCCTCGCTTCCGCCGCCTCCTCCGCCGCCGCCGACATGGACACCACGATCGGCTCGGTGCCGACGGCCTCCGATGCGGCGGCGCCTGTTTTCGCGGCGAACTCCGCGCCGAGGGAGGCCACGCTGGGGCGGCACCTCGCGCGGCGGCTGGCGGAGGTCGGGGCGCGCGACGTGTTCACGGTGCCGGGGGACTTCAACCTCACGCTGCTCGACGAGCTCGAGGCGGAGGCGGGGGCGGGGCACGGCGGGGTGCGGCTCGTCGGGTGCTGCAACGAGCTCAACGCGGCGTACGCCGCCGACGGGTACGCCCGCGCGCGCGGCGGCGGGGTCGGGGCGTGCGCCGTCACGTTCACCGTCGGTGGCCTCAGCGCCATCAACGCCGTCGCCGGCGCGTTCAGCGAGAACCTCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL D43144               [                                                 TCTCCCAAGGAAACTTCTCCACTTCTNTCCTCGCTTCCGNCGCCTCCTACGNCGCCGCCGACATGGACACCACGATCGGCTCGGTGac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB638281             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATCGGAGATGGAAGCTTTCAGGTGACGGCACAAGAAGTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAATGGAGGGTACACCATCGAGGTGGAGATCCA TGACGGTCCTTACAATGTCATCAAGAATTGGAACTACACCGGTGTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTACA CGGCAAAGGTCCGAA CTGAGGAGGAACTGAAG GAA GCAATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA CAAGGATGACACA AGTAAGGAGCTTCTTGAGTGGGGCTCCA GAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCA GTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGT GTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGT CAATAAATCTGAAATCGATTTTT GGTTGCCCT                                                                                                                                                                                                                                   ]
[+] EMBL BI812996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AATGCTTC TT GGGGCAGAAAAGCATCATCTTCCTCATAAACCATGGAGGGTACACCATCGAGGTGGAGATCCACTGACGGTCCTTAC ATGTCATCAAGAATTGGAACTACACCGGTTTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTACA CGGCAAAGGTCCGAA CCGAGGAGGAACTGAAG GAA CCCATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA CAAGGATGACACA AGTAAGGAGCTTC TGAGTGGGGCTCCA GAGTTTCTGCTGCAAATA CCGCCCACC AATCCTCA GTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGT GTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGT CAATAAATCTGAAATCGATTTTT GGTTaaaaaa                                                                                                                                                                                                                                  ]
[+] EMBL BM421843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCGAGGGGAAGTGCTACACCGGCCAAGGTCCGAATCCGAGGAGGAACTGAAGTGAANGCCATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACACCAAGGATGACACANAGTAAGGAGCTTCTTGAGTGGGGCTCCACGAGTTTCTGCTGCCAATA CCGCCCNCCCAATCCTCACGTGAGTACGTCAGATATCCGACTTGCCCTGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGTGGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCCAATAAATCTGAAATCGATTTTTGGGTTGCCC ACCAAAAAAAAAA                                                                                                                                                                                                                      ]
[-] EMBL CF326063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCTTGTGCTTCATAGAGGTGATTGTACA CAAGGATGACACA AGTAAGGAGCTTCTTGAGTGGGGCTCCA GAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCA GTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGT GTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGT CAATAAATCTGAAATCGATTTTT GGTTGCCCTTCCATGTTCCAACTGACTGACTTTGCATTGTACATGGGATCTAGTTGTTCTGGAGAGTCAGGAACAGGTTTGAGGCTTCCCTTGATTGTCAACCAATGAGAACAGCATCTCTCATTAAAAAAACAGGCTAAACGAATAGATCAATTTCTGTTTGAGAAAAAATGGTTCCATGAAGTTCAAACTTGAATGTTTCAATAAGATTAAGTATTTGTTTTTTCCGGCACGAG]


>consensus_12205#0 GACACGCCGAGAAGAAAAAAAAAAGAAAAAAAAGCAACGAACCAACTTTTCTCCCAAGGA AACTTCTCCACTTCTCTCCTCGCTTCCGCCGCCTCCTCCGCCGCCGCCGACATGGACACC ACGATCGGCTCGGTGCCGACGGCCTCCGATGCGGCGGCGCCTGCCCCCGCGGCGAACTCC GCGCCGAGGGAGGCCACGCTGGGGCGGCACCTCGCGCGGCGGCTGGCGGAGGTCGGGGCG CGCGACGTGTTCACGGTGCCGGGGGACTTCAACCTCACGCTGCTCGACGAGCTCGAGGCG GAGGCGGGGGCGGGGCACGGCGGGGTGCGGCTCGTCGGGTGCTGCAACGAGCTCAACGCG GCGTACGCCGCCGACGGGTACGCCCGCGCGCGCGGCGGCGGGGTCGGGGCGTGCGCCGTC ACGTTCACCGTCGGTGGCCTCAGCGCCATCAACGCCGTCGCCGGCGCGTTCAGCGAGAAC CTCCCCGTGGTGTGCATCGTTGGGGGCCCCAACAGCAACGACTACGGGAGCAACCGCATC CTGCATCACACCATCGGGCTGCCTGATTTCACGCAGGAGCTCAGGTGCTTCCAGACTGTC ACTTGCTATCAGGCGGTGGTGAACAACTTGGAGGATGCACATGAGCAGATTGATGCTGCC ATCTCCACTGCAATAAAGGAGAGCAAGCCTGTTTACATAAGCATCAGCTGCAACCTCCCC TCTATCCCACATCCCACCTTTAGCCGCCACCCTGTTCCTTTCTTCCTGTCCCCAAGATTA TCAAACCAGATGAACCTGGAGACAGCAGTGGAAACTGCTGCAGCTTTCCTGAACAAAGCA GTCAAGCCAGTCCTCGTTGGTGGACCAAAAATGAGGGTGGCCAAAGCATGCAAATCCTTC GTAGAGCTGGCTGATGCCTGTGGTTATCCTGTTGCGGTCATGCCTTCTGCAAAGGGTCTT GTGCCAGAGCACCATCCTAGGTTTATTGGCACGTACTGGGGTGCTGTGAGCACTCCATTT TGTGCTGAGATCGTCGAGTCAGCTGATGCATATCTATTTGCTGGCCCAATATTTAATGAC TACAGCTCGGTTGGATACTCACTACTTCTCAAGAAGGAGAAGGCCATCATCGTCCAGCCA GACCGGGTGGTGATAGGTCATGGGCCTGCGTTTGGGTGTGTTCTGATGAAGGACTTCCTG CATGCACTTTCAGCACGGCTGAAGAAAAACACGGCTGCATATGAGAACTATCGTCGGATT TATGTGCCTCCGGGTGAACCTCCTTTGTCTGAGCCTGGAGAGCCATTGAGAGTGAATGTA CTTTTCCAGCATATTCAGAAAATGTTGTCAGCCAACTCGGCTGTCATTGCTGAGACTGGA GACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGGTACGAATTTCAA ATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCT AAGGATAAGCGAGTCATTGCTTGCATCGGAGATGGAAGCTTTCAGGTGACGGCACAAGAA GTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAATGGAGGG TACACCATCGAGGTGGAGATCCATGACGGTCCTTACAATGTCATCAAGAATTGGAACTAC ACCGGTGTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTACACGGCAAAGGTCCGA ACTGAGGAGGAACTGAAGGAAGCAATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTTG TGCTTCATAGAGGTGATTGTACACAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGGC TCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATCC GACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCA TGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATAC CTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCCCTACCAAAAAAAAAATGA CTGACTTTGCATTGTACATGGGATCTAGTTGTTCTGGAGAGTCAGGAACAGGTTTGAGGC TTCCCTTGATTGTCAACCAATGAGAACAGCATCTCTCATTAAAAAAACAGGCTAAACGAA TAGATCAATTTCTGTTTGAGAAAAAATGGTTCCATGAAGTTCAAACTTGAATGTTTCAAT AAGATTAAGTATTTGTTTTTTCCGGCACGAG



consensusID : consensus_12205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 601
fasta sequence
                              [AAAAAAGGNNAAAGAAAGGTTTTGTTCTTGGGANGGAGTTTNNGGGCGGAAAAAGAGTTTGAAATTTTTTTGGGGCAGAAANGTTTTTTTNCTTTTAAACAGGGGGGGAACCCNTGGNGGGGNAAACCAGGACGTCCTAACAATTTTNTCAAGGATTGGGAAAACACCGGTGTGGGGGAGGCGTTCNATANTGGNGGGGGGAAGTGGTAACACGGCAAAGTTCNGAACNGAGGAGGACTGAAGGAAGCAATTGAAGAAGCTCAGGGACNTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA-CAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGGCTCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCCAAAAAAAAAAAANAAAAAAAANAAAAAAAANANA]

[+] EMBL AA753863             [AAAAAAGGNNAAAGAAAGGTTTTGTTCTTGGGANGGAGTTTNNGGGCGGAAAAAGAGTTTGAAATTTTTTTGGGGCAGAAANGTTTTTTTNCTTTTAAACAGGGGGGGAACCCNTGGNGGGGNAAACCAGGACGTCCTAACAATTTTNTCAAGGATTGGGAAAACACCGGTGTGGGGGAGGCGTTCNATANTGGNGGGGGGAAGTGGTAACACGGCAAAGTTCNGAACNGAGGAGGACTGAAGGAAGCAATTGAAGAAGCTCAGGGACNTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACA CAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGGCTCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCCAAAAAAAAAA                        ]
[+] EMBL BI806025             [                                                                                                                                                                                                                                                                                                       AGGTGATTGTACACCAAGGATGACACAAGTAAGGAGCTTCTTGA TGGGGCTCCAGAGTTTCTGCTGC AATAGCCGCCCACC AATCCTCAGTGAGTACGTCAGATATCCGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGATCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTCCC                                  ]
[+] EMBL AU090625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCGCATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCAAAAAAAAAAAAANAAAAAAAANAAAAAAAANANA]


>consensus_12205#1 AAAAAAGGNNAAAGAAAGGTTTTGTTCTTGGGANGGAGTTTNNGGGCGGAAAAAGAGTTT GAAATTTTTTTGGGGCAGAAANGTTTTTTTNCTTTTAAACAGGGGGGGAACCCNTGGNGG GGNAAACCAGGACGTCCTAACAATTTTNTCAAGGATTGGGAAAACACCGGTGTGGGGGAG GCGTTCNATANTGGNGGGGGGAAGTGGTAACACGGCAAAGTTCNGAACNGAGGAGGACTG AAGGAAGCAATTGAAGAAGCTCAGGGACNTAAGAAGGATTGCTTGTGCTTCATAGAGGTG ATTGTACACAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGGCTCCAGAGTTTCTGCT GCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATCCGACTTGCCATGTTTT GATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTG TTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATACCTGTATTATTGTCAA TAAATCTGAAATCGATTTTTGGTTGCCAAAAAAAAAAAANAAAAAAAANAAAAAAAANAN A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12205#0      GACACGCCGAGAAGAAAAAAAAAAGAAAAAAAAGCAACGAACCAACTTTTCTCCCAAGGA 60
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      AACTTCTCCACTTCTCTCCTCGCTTCCGCCGCCTCCTCCGCCGCCGCCGACATGGACACC 120
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ACGATCGGCTCGGTGCCGACGGCCTCCGATGCGGCGGCGCCTGCCCCCGCGGCGAACTCC 180
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GCGCCGAGGGAGGCCACGCTGGGGCGGCACCTCGCGCGGCGGCTGGCGGAGGTCGGGGCG 240
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      CGCGACGTGTTCACGGTGCCGGGGGACTTCAACCTCACGCTGCTCGACGAGCTCGAGGCG 300
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GAGGCGGGGGCGGGGCACGGCGGGGTGCGGCTCGTCGGGTGCTGCAACGAGCTCAACGCG 360
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GCGTACGCCGCCGACGGGTACGCCCGCGCGCGCGGCGGCGGGGTCGGGGCGTGCGCCGTC 420
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ACGTTCACCGTCGGTGGCCTCAGCGCCATCAACGCCGTCGCCGGCGCGTTCAGCGAGAAC 480
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      CTCCCCGTGGTGTGCATCGTTGGGGGCCCCAACAGCAACGACTACGGGAGCAACCGCATC 540
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      CTGCATCACACCATCGGGCTGCCTGATTTCACGCAGGAGCTCAGGTGCTTCCAGACTGTC 600
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ACTTGCTATCAGGCGGTGGTGAACAACTTGGAGGATGCACATGAGCAGATTGATGCTGCC 660
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ATCTCCACTGCAATAAAGGAGAGCAAGCCTGTTTACATAAGCATCAGCTGCAACCTCCCC 720
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TCTATCCCACATCCCACCTTTAGCCGCCACCCTGTTCCTTTCTTCCTGTCCCCAAGATTA 780
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TCAAACCAGATGAACCTGGAGACAGCAGTGGAAACTGCTGCAGCTTTCCTGAACAAAGCA 840
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GTCAAGCCAGTCCTCGTTGGTGGACCAAAAATGAGGGTGGCCAAAGCATGCAAATCCTTC 900
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GTAGAGCTGGCTGATGCCTGTGGTTATCCTGTTGCGGTCATGCCTTCTGCAAAGGGTCTT 960
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GTGCCAGAGCACCATCCTAGGTTTATTGGCACGTACTGGGGTGCTGTGAGCACTCCATTT 1020
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TGTGCTGAGATCGTCGAGTCAGCTGATGCATATCTATTTGCTGGCCCAATATTTAATGAC 1080
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TACAGCTCGGTTGGATACTCACTACTTCTCAAGAAGGAGAAGGCCATCATCGTCCAGCCA 1140
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GACCGGGTGGTGATAGGTCATGGGCCTGCGTTTGGGTGTGTTCTGATGAAGGACTTCCTG 1200
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      CATGCACTTTCAGCACGGCTGAAGAAAAACACGGCTGCATATGAGAACTATCGTCGGATT 1260
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TATGTGCCTCCGGGTGAACCTCCTTTGTCTGAGCCTGGAGAGCCATTGAGAGTGAATGTA 1320
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      CTTTTCCAGCATATTCAGAAAATGTTGTCAGCCAACTCGGCTGTCATTGCTGAGACTGGA 1380
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      GACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGGTACGAATTTCAA 1440
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCT 1500
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      AAGGATAAGCGAGTCATTGCTTGCATCGGAGATGGAAGCTTTCAGGTGACGGCACAAGAA 1560
consensus_12205#1      AAAAAAGGNNAAAGAAAGGTTTTGTTCTTGGGANGGAGTTTNNGGGCGG------AAAAA 54
                       **  *      *   *  * **   **   *   * ** **   ** *       ** **

consensus_12205#0      GTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAATGGAGGG 1620
consensus_12205#1      GAGTTTGAAATTTTT---TTGGGGCAGAAANG--TTTTTTTNCTTTTAAACAGGGGGGGA 109
                       * **    ***  **   * ********** *  *  * ** **  ******  ** ** 

consensus_12205#0      TACACCATCGAGGTGGAGATCCATGACGGTCCTTACAATGTCATCAAGAATTGGAACTAC 1680
consensus_12205#1      ---ACCCNTGGNGGGGNAAACCAGGACG-TCCTAACAATTTTNTCAAGGATTGGGAAAAC 165
                          ***   *  * **  * *** **** **** ***** *  ***** ***** *  **

consensus_12205#0      ACCGGTGTGGTGGAAGCGTTCCATAATGGCGAGGGGAAGTGCTA-CACGGCAAAGGTCCG 1739
consensus_12205#1      ACCGGTGTGGGGGAGGCGTTCNATANTGGNGGGGGGAAGTGGTAACACGGCAAAGTTCNG 225
                       ********** *** ****** *** *** * ********* ** ********** ** *

consensus_12205#0      AACTGAGGAGGAACTGAAGGAAGCAATTGAAGAAGCTCAGGGACCTAAGAAGGATTGCTT 1799
consensus_12205#1      AACNGAGGAGGA-CTGAAGGAAGCAATTGAAGAAGCTCAGGGACNTAAGAAGGATTGCTT 284
                       *** ******** ******************************* ***************

consensus_12205#0      GTGCTTCATAGAGGTGATTGTACACAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGG 1859
consensus_12205#1      GTGCTTCATAGAGGTGATTGTACACAAGGATGACACAAGTAAGGAGCTTCTTGAGTGGGG 344
                       ************************************************************

consensus_12205#0      CTCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATC 1919
consensus_12205#1      CTCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATC 404
                       ************************************************************

consensus_12205#0      CGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGC 1979
consensus_12205#1      CGACTTGCCATGTTTTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGC 464
                       ************************************************************

consensus_12205#0      ATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATA 2039
consensus_12205#1      ATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTGGTTAGAAATGATTTCAGACTCTCATA 524
                       ************************************************************

consensus_12205#0      CCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCCCTACCAAAAAAAAAATG 2099
consensus_12205#1      CCTGTATTATTGTCAATAAATCTGAAATCGATTTTTGGTTGCCAAAAAAAAAAAANAAAA 584
                       *******************************************  *  ******* **  

consensus_12205#0      ACTGACTTTGCATTGTACATGGGATCTAGTTGTTCTGGAGAGTCAGGAACAGGTTTGAGG 2159
consensus_12205#1      AAAANAAAAAAAANANA------------------------------------------- 601
                       *          *    *                                           

consensus_12205#0      CTTCCCTTGATTGTCAACCAATGAGAACAGCATCTCTCATTAAAAAAACAGGCTAAACGA 2219
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      ATAGATCAATTTCTGTTTGAGAAAAAATGGTTCCATGAAGTTCAAACTTGAATGTTTCAA 2279
consensus_12205#1      ------------------------------------------------------------
                                                                                   

consensus_12205#0      TAAGATTAAGTATTTGTTTTTTCCGGCACGAG 2311
consensus_12205#1      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)