Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12211 cluster # 12211       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12211#0 length = 1676 sequences # 6  
consensus_12211#1 length = 1294 sequences # 4  

consensusID : consensus_12211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1676
fasta sequence
                              [GGCCGGCAATAGAGAACAAACTCTCCACCTTCTAACCGCTTCCTTGCTTGCTGCCATAAGCCGCTGAGGTCACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCGGCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCTCCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCATGCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCACCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCGGCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGCCCACTCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTGTTTGATGCATACTCGTACAAATTAATATTCTTGCTGCGTTCATATATATATATGTCC]

[+] EMBL AK120102             [GGCCGGCAATAGAGAACAAACTCTCCACCTTCTAACCGCTTCCTTGCTTGCTGCCATAAGCCGCTGAGGTCACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCGGCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCTCCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCATGCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCACCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCGGCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGCCCACTCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTGTTTGATGCATACTCGTACAAATTAATATTCTTGCTGCGTTCATATATATATATGTCC]
[+] EMBL AK072065             [    GGCAATAGAGAACAAACTCTCCACCTTCTAACCGCTTCCTTGCTTGCTGCCATAAGCCGCTGAGGTCACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCGGCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCTCCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCATGCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCACCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCGGCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGCCCACTCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACA                                                               ]
[+] EMBL CB646741             [                                                                      CACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCGGCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCTCCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCATGCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCACCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCGGCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGCCCACTCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCATGCGGCGGTGAGGTGGAGAAAGGAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB646742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tgGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTG                                                         ]
[+] EMBL CF280846             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGGGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCAaaaa                                                                                                                                 ]
[-] EMBL CF280847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGGGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGAAACAAAGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTACCAAGGAAAAAAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCA                                                                                                                                                                              ]


>consensus_12211#0 GGCCGGCAATAGAGAACAAACTCTCCACCTTCTAACCGCTTCCTTGCTTGCTGCCATAAG CCGCTGAGGTCACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCG GCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCT CCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCAT GCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCA CCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCG GCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGC CCACTCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCC CGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTG TCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGA GGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCG ACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATA ATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGC AAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCAT ATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGT GAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTG GCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGT TCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGC AAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCG CTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCC GGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGT GAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGG CTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTAGCTGCCATGTCGTTTTAAAATTTAG GTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCAT TCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTG CATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCA GTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTGT TTGATGCATACTCGTACAAATTAATATTCTTGCTGCGTTCATATATATATATGTCC



consensusID : consensus_12211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1294
fasta sequence
                              [ATTAGAACTCGAGAAAATCCTAGACCTTAAGAAAAGGAATATGAAAAAGAACAAATTATACATAGACTTTGGGACTCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTGTTTGAAAAAAAAAAAGA]

[+] EMBL CB657564             [ATTAGAACTCGAGAAAATCCTAGACCTTAAGAAAAGGAATATGAAAAAGAACAAATTATACATAGACTTTGGGACTCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK061560             [                                                                     TGGGACTCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCG                                                                                                      ]
[+] EMBL AK061756             [                                                                     TGGGACTCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCG                                                                                                      ]
[-] EMBL CB657565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGG TTTTTAGCTGCCATGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCTTGTTTGAAAAAAAAAAAGA]


>consensus_12211#1 ATTAGAACTCGAGAAAATCCTAGACCTTAAGAAAAGGAATATGAAAAAGAACAAATTATA CATAGACTTTGGGACTCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGT GCTGCGGCGGCTGTCCCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGA AGGCCCCGCTGCCGCTGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCG GTGAGGTGGAGAAGGGAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGT CGCCCAATCCTAGAGCGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTT CCCAGCATATCTCAATAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTG GCACATTGTAAGAGAGCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTAC ACGTGGAGTTGAAGCATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCA GTGGATGGTAACATTGTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTC TCTTGCATACAGGGTTGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGA GCAAAGCCGTGTCATGTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAA CCGTGTTATCATGCGGCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCC GGGTGATGGCGTGGGCGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGG AGAGCCGGCGTGACTCCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAG GAGAACTAAGAGCTGGTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGC TTATAATGGCGCACTGGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTTAGCTGCCA TGTCGTTTTAAAATTTAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTC ATTTACTTTCACGACCATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTC TGTACATGCCTGATAGTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCC ACTATGCTGCCGCACCCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAG CTATACATACACTCTTGTTTGAAAAAAAAAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12211#0      GGCCGGCAATAGAGAACAAACTCTCCACCTTCTAACCGCTTCCTTGCTTGCTGCCATAAG 60
consensus_12211#1      ------------------------------------------------------------
                                                                                   

consensus_12211#0      CCGCTGAGGTCACCACGGGCGGCCGACCACCACCGCTGCCGACCCATGTCGCCGTTCGCG 120
consensus_12211#1      ------------------------------------------------------------
                                                                                   

consensus_12211#0      GCCGCCCGGCTGACCATGCATGACCCTCGTCGGCCTCCTCGCGTAGGTCACTGCTGGCCT 180
consensus_12211#1      ------------------------------------------------------------
                                                                                   

consensus_12211#0      CCTTGCACCGTGGGCCACAGCCTCACGCCGCGTCAGTCGTGCCTCGCCAGCAATGGCCAT 240
consensus_12211#1      ------------------------------------------------------------
                                                                                   

consensus_12211#0      GCATCGCTCCAGCTAGATCCATGTGCCGCCGGCCGCTGCCTTGCACACCACCGTCCGCCA 300
consensus_12211#1      ------------------------------------------------------------
                                                                                   

consensus_12211#0      CCTCACACGCCGTCAGTTGCGTGGCCTCCAACACCTGCCGACGAGCCGTTGTTGTCGCCG 360
consensus_12211#1      -------------------------------------ATTAGAACTCGAGAAAATCCTAG 23
                                                               *  *  **      **   *

consensus_12211#0      GCTCTGACCAGATCTGGCAGGAGACACCAGATCCGGCCACGCGCCACCGGTCGCTAGAGC 420
consensus_12211#1      ACCTTAAGAAAA----GGAATATGAAAAAGAACAAATTATACAT----AGACTTTGGGAC 75
                        *  * *  * *    * *  *   *  *** *     *  *       * *  * *  *

consensus_12211#0      CCACT--CCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTC 478
consensus_12211#1      TCATTATCCCAAAGTGCCACCGGCTCTCCCTCTTTGCCTCCCGGTGCTGCGGCGGCTGTC 135
                        ** *  *****************************************************

consensus_12211#0      CCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGC 538
consensus_12211#1      CCCGAGGCCATGGGATCAGGCCTCAGACCTCCGGGGGGAGAGGGAAGGCCCCGCTGCCGC 195
                       ************************************************************

consensus_12211#0      TGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGG 598
consensus_12211#1      TGTCCTTGCAGTTACATGGTTTTCCGGCGGCTTGCTCAGGCGGCGGTGAGGTGGAGAAGG 255
                       ************************************************************

consensus_12211#0      GAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAG 658
consensus_12211#1      GAGGAGGTGGTGGGTGGCAGCAGGGGAGGGAGACATCGCCCATGTCGCCCAATCCTAGAG 315
                       ************************************************************

consensus_12211#0      CGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAA 718
consensus_12211#1      CGACGCAGGGGCGCAAATGGATGGTCTCTCCTCTGTGCTCTTCTTCCCAGCATATCTCAA 375
                       ************************************************************

consensus_12211#0      TAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGA 778
consensus_12211#1      TAATTCAGTTGCTGGGGAGTACCACATGCATCAGATGCCGTGTTGGCACATTGTAAGAGA 435
                       ************************************************************

consensus_12211#0      GCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGC 838
consensus_12211#1      GCAAAGGAGCCTTGAGGTGGTGATTCAAATTGTGGTGCAAATTACACGTGGAGTTGAAGC 495
                       ************************************************************

consensus_12211#0      ATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATT 898
consensus_12211#1      ATATGCATGGAGTAGCCATGGGCTAGCTAGCTAAGCTGCTTACCAGTGGATGGTAACATT 555
                       ************************************************************

consensus_12211#0      GTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGT 958
consensus_12211#1      GTGAGCTACATGATTGACGACCTTGACTAGGACATTATCGCCTTCTCTTGCATACAGGGT 615
                       ************************************************************

consensus_12211#0      TGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCAT 1018
consensus_12211#1      TGGCCCCGGGAACTTGCCATTGACAGTGAGGATAGGCTTGGTTGAGCAAAGCCGTGTCAT 675
                       ************************************************************

consensus_12211#0      GTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCG 1078
consensus_12211#1      GTTCCGCATGACCACCTGCACAAGACACAGAAAAGACAGACAAAACCGTGTTATCATGCG 735
                       ************************************************************

consensus_12211#0      GCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGG 1138
consensus_12211#1      GCAAAGTTTGATGACGATATATCCTCACATTGAACTTGTAATGCCGGGTGATGGCGTGGG 795
                       ************************************************************

consensus_12211#0      CGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACT 1198
consensus_12211#1      CGCTGAGAGCCTGAAGCAGGAAGCAGGCGGCCATGAGGAGCAGGGAGAGCCGGCGTGACT 855
                       ************************************************************

consensus_12211#0      CCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTG 1258
consensus_12211#1      CCGGCAGGACGGCCATGTTTGCTGCGTGACCAGCGGCAGGGGAAGGAGAACTAAGAGCTG 915
                       ************************************************************

consensus_12211#0      GTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACT 1318
consensus_12211#1      GTGAGAGTGCAGTGCAGTGCATGGAAATACGGAGGTAACGAATGCTTATAATGGCGCACT 975
                       ************************************************************

consensus_12211#0      GGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTT-AGCTGCCATGTCGTTTTAAAATT 1377
consensus_12211#1      GGCTAGATAGGAGGGAATGGGCGGTGTTGGGTTTTTTAGCTGCCATGTCGTTTTAAAATT 1035
                       ************************************ ***********************

consensus_12211#0      TAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGAC 1437
consensus_12211#1      TAGGTGGGGAAGCCTTGCTTAACAAGGCTAGGAACCTTCTGATTCATTTACTTTCACGAC 1095
                       ************************************************************

consensus_12211#0      CATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATA 1497
consensus_12211#1      CATTCGCCTAAATTTTACCAGCCCAATCCCAGCTGCTGCTGCTTCTGTACATGCCTGATA 1155
                       ************************************************************

consensus_12211#0      GTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCAC 1557
consensus_12211#1      GTGCATTCCTTCAGTACCACATAAAGCTACCTACCCGATTACTCCACTATGCTGCCGCAC 1215
                       ************************************************************

consensus_12211#0      CCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCT 1617
consensus_12211#1      CCAGTTTCTGGCTGTTCATACTTGGTGAAACCTTCACTTAATTAGCTATACATACACTCT 1275
                       ************************************************************

consensus_12211#0      TGTTTGATGCATACTCGTACAAATTAATATTCTTGCTGCGTTCATATATATATATGTCC 1676
consensus_12211#1      TGTTTGAAAAAAAAAAAGA---------------------------------------- 1294
                       *******   * *     *                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)