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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1555 fasta sequence
[GGCACAAGCACAACACCACTTCGAGTGTGTTTGTCGTCTCGCCTCTGCTGCTTCCTTCTCCTACAAGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGGCACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGCATCACAGAGGCATTTGGAGAGTTCCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGTGTCTCCACTCAGCTTCCAATTCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGACACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCAATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAACATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACTTGCTCCTTGGCCTCGCTGCCAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATTGCACTATTCCGTGTTGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAGATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCGGACCCAGGTGGTGGAATGTTCATAACTGA-CCCGAAGAAACCTGCGGGAGGCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATT-GAT-AAAAGAATACAACTACTGCTGCTGCTATGTTTTTGCCACTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTAT-----TATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAA--ATATAAGAGGTTAACATGATGGTATCCCCAGATACTATTTTTTGTACCTGCTCGTGCACAATTTATACAATCGGTCTTAAACTAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGACAG]
[+] EMBL AB079874 [GGCACAAGCACAACACCACTTCGAGTGTGTTTGTCGTCTCGCCTCTGCTGCTTCCTTCTCCTACAAGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGGCACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGCATCACAGAGGCATTTGGAGAGTTCCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGTGTCTCCACTCAGCTTCCAATTCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGACACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCAATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAACATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACTTGCTCCTTGGCCTCGCTGCCAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATTGCACTATTCCGTGTTGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAGATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCGGACCCAGGTGGTGGAATGTTCATAACTGA CCCGAAGAAACCTGCGGGAGGCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATT GAT AAAAGAATACAACTACTGCTGCTGCTATGTTTTTGCCACTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTAT TATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAA ATATAAGAGGTTAACATG ]
[+] EMBL AB064544 [ GCACAAGCACAACACCACTTCGAGTGTGTTTGTCGTCTCGCCTCTGCTGCTTCCCTCTCCTACAAGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGGCACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGCATCACAGAGGCATTTGGAGAGTTCCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGTGTCTCCACTCAGCTTCCAATTCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGACACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCAATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAACATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACTTGCTCCTTGGCCTCGCTGCCAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATTGCACTATTCCGTGTTGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAGATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCGGACCCAGGTGGTGGAATGTTCATAACTGA CCCGAAGAAACCTGCGGGAGGCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATT GAT AAAAGAATACAACTACTGCTGCTGCTATGTTTTTGCCACTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTAT TATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAA ATATAAGAGGTTAACATG ]
[+] EMBL CF319217 [ AAGCACAACACCACTTCGAGTGTGTTTGTCGTCTCGCCTCTGCTGCTTCCTTCTCCTACAAGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAATGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGGGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGGCACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGTATCACAGAGGCATTTGGAGAGTTCCGATCAGGGAAGACCCAGTTGGCTCACAC ]
[+] EMBL CF329755 [ GTTTGTCGTCTCGCCTCTGCTGCTTCCTTCTCCTAC AGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTtg ]
[+] EMBL AB046620 [ CCTCCGCCTACAGGTGCGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCCAGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGTTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGACAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGGCACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGCATCACAGAGGCATTTGGAGAGTTCCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGTGTCTCCACTCAGCTTCCAATTCACATGCATGGGGGGAATGGGAAGGTCGCTTATATCGATACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCGATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAATATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACCTTCTCCTTGGCCTTGCCGCTAAGATGGCTGAAGAGCCTTTCAGGCCTCTGATTGTGGATTCTGTGATCGCACTATTCCGTGTCGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAAATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCCGACCCAGGTGGTGGAATGTTCATAACTGA CCTGAAAAAACCAGCGGGAGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCCTGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCCTGCATAGGCCATATAGGTTTGGTACATT GACTA AACTACTACTGCTAC TTTGCCACTGTCGAGGAAATATGCAACCTCATTTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATG CTTATGAGATCAACAGTTGTACTGAAACAAATAC AGTATTGGCTTAAGTGAAAATATATAAGAGGGTTACATGATGGTA ]
[+] EMBL CA764686 [ TCAGCTTCC ATTCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGACACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCAATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAACATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACTTGCTCCTTGGCCTCGCTGCCAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATTGCACTATTCCGTGTTGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAGATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCGGACCCAGGTGGTGGAATGTTCATAACTGA CCCGAAGAAACCTGCGGGAGGTCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGNTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATTGGATNAAAAGAATACAACTACTGCTGCTGCTATGNTTTTGCCACTGCTGAGG AAGAGGCAACCTCATTTATCAAGACGGNTATATCTCACATTGGGTAT TATGAGTTATGTGATCAACAGNTGTACTGga ]
[-] EMBL CF329756 [ ATGTTCATAACTGACCCCGAAGAAACCTGCGGGAGGCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAGTGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATT GAT AAAAGAATACAACTACTGCTGCTGCTATGTTTTTGCCACTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTAT TATGAGTTATGTGGTCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAA ATATAAGAGGTTAACATGTTGGTTTCCCCAGATACTATTTTTTGTACCTGCTCGTGCACAATTTATACAATCGGTCTTAAACTAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGACAG]
consensusID : consensus_12219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1419 fasta sequence
[CGTCATCTAATTAGTGACGCGCATGAATGGAACTTCGTCGTCTTCCTCTGCTGCTTCCTTCTCCTCCAAGCCCCCGCTCCGCTCCGACGACCTCGCCGCCTCCGCCTACAGGTGGGCAGATGGCGCCGTCCAAGCAGTACAGCGAAGGCGGGCAGCTCCAGCTCATGGACGCCGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGCTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGCGAAGCAGCCGAAAAACTTCTGAGTCAGGGCTTCATAACAGGAAGTGATCTCCTTATTAAGCGGAAATCTGTTGTTCGAATCACCACTGGGAGCCAGGCGCTTGACAAGCTGCTTGGCGGAGGGATTGAAACACTTTGCATCACAGAGGCATTTGGAGAATTTCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGCGTCTCCGCTCAGCTTCCAATCCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGATACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCGATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAATATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACCTTCTCCTTGGCCTTGCCGCTAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATCGCACTATTCCGTGTCGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAAATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCCGACCCAGGTGGTGGAATGTTCATAACTGACCTGAAAAAACCAGCGGGAGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCCTGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCCTGCATAGGCCATATAGGTTTGGTACATTGACTAAACTACTACTGCTACTTTGCCACTGTCGAGGAAATATGCAACCTCATTTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATGCTTATGAGATCAACAGTTGTACTGAAACAAATACAGTATTGTCTTAAGTGAAAAATATATAAGAGGTTTACATGATGGTAACTTTC]
[+] EMBL AK110641 [CGTCATCTAATTAGTGACGCGCATGAATGGAACTTCGTCGTCTTCCTCTGCTGCTTCCTTCTCCTCCAAGCCCCCGCTCCGCTCCGACGACCTCGCCGCCTCCGCCTACAGGTGGGCAGATGGCGCCGTCCAAGCAGTACAGCGAAGGCGGGCAGCTCCAGCTCATGGACGCCGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGCTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGCGAAGCAGCCGAAAAACTTCTGAGTCAGGGCTTCATAACAGGAAGTGATCTCCTTATTAAGCGGAAATCTGTTGTTCGAATCACCACTGGGAGCCAGGCGCTTGACAAGCTGCTTGGCGGAGGGATTGAAACACTTTGCATCACAGAGGCATTTGGAGAATTTCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGCGTCTCCGCTCAGCTTCCAATCCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGATACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCGATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAATATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACCTTCTCCTTGGCCTTGCCGCTAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATCGCACTATTCCGTGTCGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAAATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCCGACCCAGGTGGTGGAATGTTCATAACTGACCTGAAAAAACCAGCGGGAGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCCTGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCCTGCATAGGCCATATAGGTTTGGTACATTGACTAAACTACTACTGCTACTTTGCCACTGTCGAGGAAATATGCAACCTCATTTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATGCTTATGAGATCAACAGTTGTACTGAAACAAATACAGTATTGTCTTAAGTGAAAAATATATAAGAGGTTTACATGATGGTAACTTTC]
[+] EMBL AB079873 [ CTTCCTTCTCCTCCAAG CCCCGCTCCGCTCCGACGACCTCGCCGCCTCCGCCTACAGGTGGGCAGATGGCGCCGTCCAAGCAGTACAGCGAAGGCGGGCAGCTCCAGCTCATGGACGCCGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGCTAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACACTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTGAAGCAAAGGTAGACAAGATCTGCGAAGCAGCCGAAAAACTTCTGAGTCAGGGCTTCATAACAGGAAGTGATCTCCTTATTAAGCGGAAATCTGTTGTTCGAATCACCACTGGGAGCCAGGCGCTTGACAAGCTGCTTGGCGGAGGGATTGAAACACTTTGCATCACAGAGGCATTTGGAGAATTTCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGCGTCTCCGCTCAGCTTCCAATCCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGATACTGAGGGAACATTCCGGCCTGAACGAATTGTGCCGATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATAATATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACCTTCTCCTTGGCCTTGCCGCTAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATCGCACTATTCCGTGTCGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTCTCCCGCCTTACTAAAATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACCAAGTGATTGCCGACCCAGGTGGTGGAATGTTCATAACTGACCTGAAAAAACCAGCGGGAGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCCTGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCCTGCATAGGCCATATAGGTTTGGTACATTGACTAAACTACTACTGCTACTTTGCCACTGTCGAGGAAATATGCAACCTCATTTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATGCTTATGAGATCAACAGTTGTACTGAAACAAATACAGTATTGTCTTAAGTGAAAAATATATAAGAGGTTTACATGATGGT ]
consensusID : consensus_12219#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CATATACTGACCCGAAGAAACCCTGCGGGGAGNCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATCTGAGGAAAGGCAAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATTGATAAAAGAATACAACTACTGCTGCATGCTATGTTTTTGCCACCTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTATTATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAAATATAAGAGGTTAACATGTTGGTTTCCCCAGATACAAAAAAAAAAAAAA]
[+] EMBL BM419775 [CATATACTGACCCGAAGAAACCCTGCGGGGAGNCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATCTGAGGAAAGGCAAAAGGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGTACATTGATAAAAGAATACAACTACTGCTGCATGCTATGTTTTTGCCACCTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTATTATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAAATATAAGAGGTTAACATGTTGGTTTCCCCAGATACAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12219#0 GGCACAAGCACAACACCACTTCGAGTGTGTTTGTCGTCTCGCCTCTGCTGCTTCCTTCTC 60
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 ---------------------CGTCATCTAATTAGTGACGCGCATGAATGGAACTTCGTC 39
consensus_12219#0 CTACAAGCCGCCGCTCCGACCTCGCCGTCGCCGGTCGCCGGCCGCCTCCGCCTACAGGTG 120
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 GTCTTCCTCTGCTGCTTCCTTCTCCTCCAAGCCCCCGCTCCGCTCCGACGACCTCGCCGC 99
consensus_12219#0 CGGGGGGTCTGTGTGAGCAGATGGCGCCGTCCAAGCAGTACGACGAAGGCGGGCAGCTCC 180
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CTCCGCCTACAGGTGGGCAGATGGCGCCGTCCAAGCAGTACAGCGAAGGCGGGCAGCTCC 159
consensus_12219#0 AGCTCATGGATGCAGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGT 240
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 AGCTCATGGACGCCGAGAGGATCGAGGAGGAGGAGGAGTGCTTCGAGTCCATCGACAAGC 219
consensus_12219#0 TAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACA 300
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 TAATCTCGCAAGGGATAAACTCTGGAGATGTGAAGAAGCTGCAGGATGCTGGTATCTACA 279
consensus_12219#0 CTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTG 360
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CTTGCAATGGCCTCATGATGCATACAAAGAAGAGCCTGACAGGAATCAAGGGATTATCTG 339
consensus_12219#0 AAGCAAAGGTAGACAAGATCTGTGAAGCAGCTGAAAAGCTTCTGAGCCAGGGCTTCATGA 420
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 AAGCAAAGGTAGACAAGATCTGCGAAGCAGCCGAAAAACTTCTGAGTCAGGGCTTCATAA 399
consensus_12219#0 CAGGAAGTGATCTCCTTATCAAGCGGAAGTCTGTTGTTCGGATCACCACTGGGAGCCAGG 480
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CAGGAAGTGATCTCCTTATTAAGCGGAAATCTGTTGTTCGAATCACCACTGGGAGCCAGG 459
consensus_12219#0 CACTTGATGAGCTGCTTGGCGGAGGGATTGAAACACTCTGCATCACAGAGGCATTTGGAG 540
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CGCTTGACAAGCTGCTTGGCGGAGGGATTGAAACACTTTGCATCACAGAGGCATTTGGAG 519
consensus_12219#0 AGTTCCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGTGTCTCCACTCAGCTTCCAA 600
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 AATTTCGATCAGGGAAGACCCAGTTGGCTCACACTCTATGCGTCTCCGCTCAGCTTCCAA 579
consensus_12219#0 TTCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGACACTGAGGGAACATTCCGGC 660
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 TCCACATGCATGGGGGGAACGGGAAGGTTGCTTACATTGATACTGAGGGAACATTCCGGC 639
consensus_12219#0 CTGAACGAATTGTGCCAATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATA 720
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CTGAACGAATTGTGCCGATTGCTGAGAGATTTGGGATGGATGCCAATGCTGTTCTTGATA 699
consensus_12219#0 ACATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACTTGCTCCTTGGCCTCG 780
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 ATATCATATATGCTCGTGCATACACCTATGAGCACCAGTACAACCTTCTCCTTGGCCTTG 759
consensus_12219#0 CTGCCAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATTGCACTAT 840
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 CCGCTAAGATGGCTGAAGAGCCTTTCAGGCTTCTGATTGTGGATTCTGTGATCGCACTAT 819
consensus_12219#0 TCCGTGTTGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGA 900
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 TCCGTGTCGATTTCAGTGGCAGGGGTGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGA 879
consensus_12219#0 TGCTCTCCCGCCTTACTAAGATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACC 960
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 TGCTCTCCCGCCTTACTAAAATAGCTGAGGAGTTCAATGTTGCAGTGTACATCACCAACC 939
consensus_12219#0 AAGTGATTGCGGACCCAGGTGGTGGAATGTTCATA-ACTGACCCGAAGAAACC-TGCGGG 1018
consensus_12219#2 -------------------------------CATATACTGACCCGAAGAAACCCTGCGGG 29
consensus_12219#1 AAGTGATTGCCGACCCAGGTGGTGGAATGTTCATA-ACTGACCTGAAAAAACC-AGCGGG 997
**** ******* *** ***** *****
consensus_12219#0 -AGGCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGATGCTGAGGAAAGGCAAA-GGA 1076
consensus_12219#2 GAGNCCACGTTCTGGCGCATGCAGCCACCATCCGGTTGAT-CTGAGGAAAGGCAAAAGGA 88
consensus_12219#1 -AGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAA-GGA 1055
** ****** ************** ************** *************** ***
consensus_12219#0 GAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTC 1136
consensus_12219#2 GAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTC 148
consensus_12219#1 GAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTC 1115
************************************************************
consensus_12219#0 CAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCC 1196
consensus_12219#2 CAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCC 208
consensus_12219#1 CAGGTAACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCC 1175
********************************************** *************
consensus_12219#0 TGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGT 1256
consensus_12219#2 TGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGGCCATATAGGTTAGGT 268
consensus_12219#1 TGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCCTGCATAGGCCATATAGGTTTGGT 1235
*** ******** ************* ******** ******************** ***
consensus_12219#0 ACATTGATAAAAGAATACAACTACTGCTGC-TGCTATGTTTTTGCCAC-TGCTGAGGAAA 1314
consensus_12219#2 ACATTGATAAAAGAATACAACTACTGCTGCATGCTATGTTTTTGCCACCTGCTGAGGAAA 328
consensus_12219#1 ACATTGACTAAA-----CTACTACTGCTAC----------TTTGCCAC-TGTCGAGGAAA 1279
******* *** * ********* * ******** ** *******
consensus_12219#0 GAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTATTATG----AGTTATG 1370
consensus_12219#2 GAGGCAACCTCATTTATCAAGACGGTTATATCTCACATTGGGTATTATG----AGTTATG 384
consensus_12219#1 TATGCAACCTCATTTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATGCTTATG 1339
* *************** ***** ***** ** * * ******** * *****
consensus_12219#0 TGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAAA---TATAAGAG 1427
consensus_12219#2 TGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAAA---TATAAGAG 441
consensus_12219#1 AGATCAACAGTTGTACTGAAACAAATAC-AGTATTGTCTTAAGTGAAAAATATATAAGAG 1398
*********************** * * ******************** ********
consensus_12219#0 GTTAACATGATGGTATCCCCAGATACTATTTTTTGTACCTGCTCGTGCACAATTTATACA 1487
consensus_12219#2 GTTAACATGTTGGTTTCCCCAGATACAAAAAAAAAAAAAA-------------------- 481
consensus_12219#1 GTTTACATGATGGTAACTTTC--------------------------------------- 1419
*** ***** **** *
consensus_12219#0 ATCGGTCTTAAACTAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATC 1547
consensus_12219#2 ------------------------------------------------------------
consensus_12219#1 ------------------------------------------------------------
consensus_12219#0 GTTGACAG 1555
consensus_12219#2 --------
consensus_12219#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||