cluster # 12220

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12220 cluster # 12220 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12220#0 length = 2216 sequences # 9

consensus_12220#1 length = 463 sequences # 1

consensusID : consensus_12220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2216
fasta sequence

                              [AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCG-TCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGT-AAGACACCCCAATATAGTTAGACTAAACGAGGTTC-TAGCT-GGAAAGACGAAGATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAAGGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAATTATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGACTCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTAGGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAACAATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTGATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACTGCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGAATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGGTTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGATGTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA-CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT-GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA-TGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA]

[+] EMBL AK102270             [AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCG TCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGT AAGACACCCCAATATAGTTAGACTAAACGAGGTTC TAGCT GGAAAGACGAAGATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAAGGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAATTATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGACTCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTAGGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAACAATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTGATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACTGCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGAATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGGTTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGATGTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGGTGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCATCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA TGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAA                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C25995               [            CCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTTCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGTAAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTTAGCTNGGAAAGACGAGGATATACATAATCTTGGAGCTTATCACTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS10324A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGGATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGGATGAGCCCCCTTGCTGTTGTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS10323A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BE039683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAACCGTTCTCAAGGA TGAGAGCAATTAATCTTGGGATATAATCCTATATGTATTTCCAGGGCAGAAATGAAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA]
[+] EMBL CA758672             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB096228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA TGAGAGCAATTAATCTTGTGA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM038926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCC ATTGTNC GTCTCGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGACTGAGA C ATTAATCTTGTGATATAAaaaa                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM421808             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ggaatTGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCACCCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGT CAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTA CCGTTCTCCAGGA TGAGA C ATTAATCTTGTGATATAAaaaa                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_12220#0
AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCC
CCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGG
AGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCC
AAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTCGCCATGAAGGTGCTCGAC
AAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATG
AAGATTGTAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTAGCTGGAAAGACGAAG
ATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAA
GGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAAT
TATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGAC
TCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTA
GGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAAC
AATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTG
ATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACT
GCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGA
ATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGG
TTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGAT
GTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAAT
GATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGAT
CTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCA
AGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTT
AAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGC
CCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTT
CGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAG
ATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACA
GCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGT
TTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTAC
CACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCACCAGAT
GTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAG
TCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTA
TTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGA
TCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATA
TGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAAT
ATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATAT
GAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTC
CCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAAC
CCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGG
TGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA

consensusID : consensus_12220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA]

[+] EMBL AU032460             [CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA]




>consensus_12220#1
CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGA
AGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAG
TNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAG
ATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCT
TGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGA
ACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGA
GCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAG
GGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12220#0      AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCC 60
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGG 120
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCC 180
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTCGCCATGAAGGTGCTCGAC 240
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATG 300
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGATTGTAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTAGCTGGAAAGACGAAG 360
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAA 420
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAAT 480
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGAC 540
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTA 600
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAAC 660
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTG 720
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACT 780
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGA 840
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGG 900
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGAT 960
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAAT 1020
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGAT 1080
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCA 1140
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTT 1200
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGC 1260
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTT 1320
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAG 1380
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACA 1440
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGT 1500
consensus_12220#1      ----------------------------------CTCCTGCATCAGTGGGATTTTCAGGT 26
                                                         ******* ******************

consensus_12220#0      TTTC-AGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTA 1559
consensus_12220#1      TTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTA 86
                       **** ************************************ ******************

consensus_12220#0      CCACATAGCTGAGTCAGTTCTTCAGTAGATC-AGTGTACCATTCTAGTTTCATGCACCAG 1618
consensus_12220#1      CCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAG 146
                       ******************************* *** ************************

consensus_12220#0      ATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGC 1678
consensus_12220#1      ATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGC 206
                       ****************************** *****************************

consensus_12220#0      AGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGT 1738
consensus_12220#1      AGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGT 266
                       ************************************************************

consensus_12220#0      TATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCG 1798
consensus_12220#1      TATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCG 326
                       ************************************************************

consensus_12220#0      GATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTA 1858
consensus_12220#1      GATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTA 386
                       ************************************************************

consensus_12220#0      TATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAA 1918
consensus_12220#1      TATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAA 446
                       *****************************************   ** **  **   * **

consensus_12220#0      ATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTAT 1978
consensus_12220#1      GCCTTTGATCTAAAAAA------------------------------------------- 463
                          * * ***  * *                                             

consensus_12220#0      ATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGT 2038
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCA 2098
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGT 2158
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA 2216
consensus_12220#1      ----------------------------------------------------------