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Oryza sativa
cluster # 12220 cluster # 12220       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12220#0 length = 2216 sequences # 9  
consensus_12220#1 length = 463 sequences # 1  

consensusID : consensus_12220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2216
fasta sequence
                              [AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCG-TCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGT-AAGACACCCCAATATAGTTAGACTAAACGAGGTTC-TAGCT-GGAAAGACGAAGATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAAGGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAATTATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGACTCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTAGGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAACAATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTGATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACTGCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGAATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGGTTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGATGTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA-CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT-GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA-TGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA]

[+] EMBL AK102270             [AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCG TCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGT AAGACACCCCAATATAGTTAGACTAAACGAGGTTC TAGCT GGAAAGACGAAGATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAAGGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAATTATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGACTCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTAGGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAACAATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTGATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACTGCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGAATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGGTTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGATGTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGGTGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCATCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA TGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAA                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C25995               [            CCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCCCCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGGAGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCCAAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTTCGCCATGAAGGTGCTCGACAAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATGAAGATTGTAAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTTAGCTNGGAAAGACGAGGATATACATAATCTTGGAGCTTATCACTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS10324A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGGATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGGATGAGCCCCCTTGCTGTTGTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS10323A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAATGATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGATCTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCAAGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTTAAGGTCCACTCTCAGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BE039683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAACCGTTCTCAAGGA TGAGAGCAATTAATCTTGGGATATAATCCTATATGTATTTCCAGGGCAGAAATGAAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA]
[+] EMBL CA758672             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTGTATCTTCAAACAGAATGAGCCCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTTCGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB096228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGA TGAGAGCAATTAATCTTGTGA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM038926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAGATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCA CCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCC ATTGTNC GTCTCGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGACTGAGA C ATTAATCTTGTGATATAAaaaa                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM421808             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ggaatTGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACAGCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGTTTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCACCCAGATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGT CAGTCT GTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTA CCGTTCTCCAGGA TGAGA C ATTAATCTTGTGATATAAaaaa                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_12220#0 AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCC CCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGG AGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCC AAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTCGCCATGAAGGTGCTCGAC AAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATG AAGATTGTAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTAGCTGGAAAGACGAAG ATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAA GGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAAT TATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGAC TCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTA GGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAAC AATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTG ATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACT GCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGA ATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGG TTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGAT GTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAAT GATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGAT CTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCA AGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTT AAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGC CCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTT CGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAG ATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACA GCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGT TTTCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTAC CACATAGCTGAGTCAGTTCTTCAGTAGATCAGTGTACCATTCTAGTTTCATGCACCAGAT GTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGCAG TCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTA TTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGA TCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATA TGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAAAT ATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTATAT GAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGTTC CCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCAAC CCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGTGG TGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA



consensusID : consensus_12220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence
                              [CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA]

[+] EMBL AU032460             [CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA]


>consensus_12220#1 CTCCTGCATCAGTGGGATTTTCAGGTTTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGA AGTTGCTNTTGCAGGCGCTGCATGTACCACATAGCTGAGTCAGTTCTTCAGTAGATCCAG TNTACCATTCTAGTTTCATGCACCAGATGTTTTGGTAGTATTGTTAATATAGAACTNTAG ATAGTCCATATAGCGGCCAATTGTGCAGTCTGTATGTAACATGGATATAGATAGGTTTCT TGTGTAGTAGTAGTAAATAAGCTGGTTATTTTGCTGCCATGAAACTGGAATGACTTGTGA ACGTCGAAATGCTCTCGTGTATGTCGGATCTTCTTCACTTAGCCGTTCTCAAGGATGAGA GCAATTAATCTTGTGATATAATCCTATATGTATTTCCAGGGCAGAAATGGAAAAGAAAAG GGAAACCTGCCTACCACAACTTTTAAGCCTTTGATCTAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12220#0      AGCGAAGCCCCCCCAAAGCCGAGCTCGCGCGCGGCGGCGTCGTCGTCTTCCTCCTCTTCC 60
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CCCCGAGTTGGATTCGTGGCCGCGCGGCGGATGGGAGGGGAGGAGGGAATGGCGGCGGGG 120
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AGGAAGAAGCGGGTGGGGAGGTACGAGGTTGGGCGGACCATCGGGCAGGGGACGTTCGCC 180
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGTCAAGTTCGCCGTGGACGCCGACACCGGCGCCGCCGTCGCCATGAAGGTGCTCGAC 240
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGACACCATCCTCAACCACCGCATGCTCCACCAGATCAAAAGGGAGATATCAATAATG 300
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGATTGTAAGACACCCCAATATAGTTAGACTAAACGAGGTTCTAGCTGGAAAGACGAAG 360
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATATACATAATCTTGGAGCTTATCACTGGAGGCGAATTGTTCGATAAAATAGCTCGCCAA 420
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGGAAGCTTCGTGAAAATGAAGCAAGGAAGTACTTCCAGCAGCTTATTGATGCCATCAAT 480
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TATTGCCATAGCAAAGGAGTATATCATAGAGATTTGAAGCCTGAAAACCTGCTTCTTGAC 540
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TCACGTGGAAACTTGAAAGTTTCTGATTTTGGACTTAGCACTTTGGCCCAGAAAGGAGTA 600
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGCCTTCTTCACACAACTTGTGGAACACCAAATTATGTTGCTCCTGAGGTGCTTAGCAAC 660
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AATGGTTATGATGGATCTGCAGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTTTTG 720
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATGGCTGGATACCTTCCTTTTGAGGAAGATGATCTTCCAACACTGTATGATAAGATTACT 780
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GCAGGTCAGTTTTCATGCCCTTATTGGTTCTCTCCAGGTGCTACATCGCTTATCCACAGA 840
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATACTCGACCCAAATCCAAAAACTCGTATCACTATTGAACAGATAAGGGAAGACACATGG 900
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TTTAAGAAGACTTATGTAGCCATTAAACGTGGTGAAGATGAAAATGTTGATCTGGATGAT 960
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GTACAGGCTGTTTTTGACAATATTGAGGACAAGTACGTTTCTGAGCAAGTGACTCATAAT 1020
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GATGGTGGCCCTCTTGTGATGAATGCCTTCGAGATGATTACATTATCTCAAGGTTTGGAT 1080
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CTTTCAGCATTATTTGATAGACAGCAGGAGTTTGTCAAACGTCAAACTCGTTTTGTCTCA 1140
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AGGAAACCAGCAAAGACTATAGTAGCTACAATTGAAGTTGTTGCTGAGACTATGGGTCTT 1200
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      AAGGTCCACTCTCAGAATTACAAGTTGCGTCTTGAAGGTGTATCTTCAAACAGAATGAGC 1260
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CCGTTTGCTGTTGTTCTACAGGTTTTCGAAGTTGCTCCTTCTCTGTTCATGGTTGATGTT 1320
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      CGAAAGGTTGCTGGTGACACACTGGAATACCACAGGTTCTACAAGAACTTGTGCAACAAG 1380
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ATGGAAAGCATAATCTGGAGACCGATTGAAGTTTCAGCGAAATCCGCACTGCTGAGGACA 1440
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GCCACATGCTAGCCTGGCGCTAACGCAGCTGCAACTCCTGCGTCAGTGGGATTTTCAGGT 1500
consensus_12220#1      ----------------------------------CTCCTGCATCAGTGGGATTTTCAGGT 26
                                                         ******* ******************

consensus_12220#0      TTTC-AGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTCTTGCAGGCGCTGCATGTA 1559
consensus_12220#1      TTTCCAGGTTGTCAACTCCTAGCCCGTCCACCGAAGTTGCTNTTGCAGGCGCTGCATGTA 86
                       **** ************************************ ******************

consensus_12220#0      CCACATAGCTGAGTCAGTTCTTCAGTAGATC-AGTGTACCATTCTAGTTTCATGCACCAG 1618
consensus_12220#1      CCACATAGCTGAGTCAGTTCTTCAGTAGATCCAGTNTACCATTCTAGTTTCATGCACCAG 146
                       ******************************* *** ************************

consensus_12220#0      ATGTTTTGGTAGTATTGTTAATATAGAACTGTAGATAGTCCATATAGCGGCCAATTGTGC 1678
consensus_12220#1      ATGTTTTGGTAGTATTGTTAATATAGAACTNTAGATAGTCCATATAGCGGCCAATTGTGC 206
                       ****************************** *****************************

consensus_12220#0      AGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGT 1738
consensus_12220#1      AGTCTGTATGTAACATGGATATAGATAGGTTTCTTGTGTAGTAGTAGTAAATAAGCTGGT 266
                       ************************************************************

consensus_12220#0      TATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCG 1798
consensus_12220#1      TATTTTGCTGCCATGAAACTGGAATGACTTGTGAACGTCGAAATGCTCTCGTGTATGTCG 326
                       ************************************************************

consensus_12220#0      GATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTA 1858
consensus_12220#1      GATCTTCTTCACTTAGCCGTTCTCAAGGATGAGAGCAATTAATCTTGTGATATAATCCTA 386
                       ************************************************************

consensus_12220#0      TATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCCTGCTCCCCAAATAATAAA 1918
consensus_12220#1      TATGTATTTCCAGGGCAGAAATGGAAAAGAAAAGGGAAACCTGCCTACCACAACTTTTAA 446
                       *****************************************   ** **  **   * **

consensus_12220#0      ATATATTATCATATACTTTATTATATTTCTCTGAGGGGGGCCCGGCCCCAATTCGCTTAT 1978
consensus_12220#1      GCCTTTGATCTAAAAAA------------------------------------------- 463
                          * * ***  * *                                             

consensus_12220#0      ATGAGTCTTTTACCCCCCTCACTGGCCGTGTTTACAACGGGGGACTGGAAAACCCTGCGT 2038
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      TCCCACTTTAATGCTTGCGACCTCCCCCTTTGACCCTGGGTTAAAATAAAGGCCTCCCCA 2098
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      ACCCCTTTCAAATTTGCATCCTATATGGAATGAACCCCCTGTACGGACAAAAGCCGGGGT 2158
consensus_12220#1      ------------------------------------------------------------
                                                                                   

consensus_12220#0      GGTGTGGTCCCCAGGAGCCGTACTTCCAACACTACCCATATAGGAATTACCTTTTCCA 2216
consensus_12220#1      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)