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Oryza sativa
cluster # 12221 cluster # 12221       Sequences # 10       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12221#0 length = 1303 sequences # 10  

consensusID : consensus_12221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1303
fasta sequence
                              [AACACGAAAGATGAATGAGGTTGTCCATGCACAAGCAAAGATCATAGCTGATCAAGATGTGATGTACAAGTACTTATCAAAGAATTTGGTTTTTGTTGCTACTGTGTCTCCTAAAGCTTCTGGTGAAATCGGATCTGCGGCACCTGAAGAAGCTTGGCTTGTGGCTTATCTTATTGATGCTGTAACCGGACGTATATTGCACCGTGTGACTCATCATGGAGCTCAAGGCCCTGTACATGCAGTTGTAAGTGAGAATTGGGTTGTATATCATTATTTCAATCTCCGAGCCCACAGATTTGAAATGGCAGTGATTGAGATATATGATCAATCTAGAGCGGACAATAAAGATGTTATGAAGCTGATACTTGGGAAGCATAATCTGTCAGCACCAACCACTTCTTATACTCGTCCAGAAGTAATGGTGAAATCTCAGTCATACTTCTTTACCTTTTCTGTCAAAGCAATTGCAGCTACACAAACAGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC-TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG-TTCAGCTACGCGCTTCTACTCAT-CACA-ATTGCTGCA-TTGGTTGCTG-CCATTGTTGTTACTTGGATTTGG-TCTGAGAAAAAGGAGTTAAGAGAT-AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT-GGATTGCTTATGAGTTGT-AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGCAACTTATTTCAACTTGGCATGTTCCATCATTATACCTTTTTCTGAATGGGTGATCTCCTCTAAAAAGA]

[+] EMBL AK065765             [AACACGAAAGATGAATGAGGTTGTCCATGCACAAGCAAAGATCATAGCTGATCAAGATGTGATGTACAAGTACTTATCAAAGAATTTGGTTTTTGTTGCTACTGTGTCTCCTAAAGCTTCTGGTGAAATCGGATCTGCGGCACCTGAAGAAGCTTGGCTTGTGGCTTATCTTATTGATGCTGTAACCGGACGTATATTGCACCGTGTGACTCATCATGGAGCTCAAGGCCCTGTACATGCAGTTGTAAGTGAGAATTGGGTTGTATATCATTATTTCAATCTCCGAGCCCACAGATTTGAAATGGCAGTGATTGAGATATATGATCAATCTAGAGCGGACAATAAAGATGTTATGAAGCTGATACTTGGGAAGCATAATCTGTCAGCACCAACCACTTCTTATACTCGTCCAGAAGTAATGGTGAAATCTCAGTCATACTTCTTTACCTTTTCTGTCAAAGCAATTGCAGCTACACAAACAGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGTAACTTATTTCAACTTGGCATGTTCCATCA                                       ]
[+] EMBL CB684894             [                                                                                                                                                                                                                                                                                                                                                   acaccctGATGTGATGAAGCTGATACTTGGGAAGCATAATCTGTCAGCACCAACCACTTCTTATACTCGTCCAGAAGTAATGGTGAAATCTCAGTCATACTTCTTTACCTTTTCTGTCAAAGCAATTGCAGCTACACAAACAGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCCTGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCATGGGATGCCTTAT                                                                                                                                                      ]
[-] EMBL CB618288             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCAGCTACACAAACAGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGCA                                                                   ]
[-] EMBL CB618290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTACACAAACAGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGCA                                                                   ]
[+] EMBL CA767046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   cAAGGGGTTAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGTAAAAATTTTACCGCAGCAACTAAACTGGTTAGCAGAATATTAGTTATTGGTGNCCATAGAACATCAATCTCTTGCAACTTATTTCAACTTGGCATGgt                                             ]
[+] EMBL CA998783             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGATAACTTCCAGGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGCACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAG                                                                                                                                                                                                                                    ]
[-] EMBL CB684895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAAATCCCACCCAACAAGAGAAAGAAGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACACTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAACTACTC TTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGATACGCGCTTCTACTCAT CACA ATTGGTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGATAGGGTCCATGTCACTTTTGAGTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAACCTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGTAACTTATTTCAACTTGGCATGTTACGTCATTATACCTTTTTCTGAATGGGTGATCTCCTCTAAAAAGA]
[+] EMBL BI796143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTTTCTATTCCTTC AAGTTGGAGTCAACTACTCTTTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACTAACTGATGAG TTCAGCTACGCGCTTCTACTCAT CACACATTGCTGCACTTGGTTGCTG CCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATC ATCTCTTGCAACTTATTTCAACTTGGCATGTTCCATCATTAaaaaa                               ]
[+] EMBL AU108255             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTCACTAACTGATGAGTTTCA NTACGCGCTTCTACTCAT CACA ATTGCTGCA TTGGTTGCTG CCATTGTTGTTACTTGGATTTGGTTCTGAGAAAAAGGAGTTAAGAGAT AAGTGGAGGTAAGTGAGGCNTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCNTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGNAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAANTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAAaaaan                                                                       ]
[+] EMBL AU032457             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCATCCACA ATTGCTGCA TTGGTTGCTGCCCATTGTTGTTACTTGGATTTGG TCTGAGAAAAAGGAGTTAAGAGATAAAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGGCAT GGATTGCTTATGAGTTGT AAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATATTAGTTATTGTTGTCCATAGAACATCAATCTCTTGTAACTTATTTCAACTTGGCATGTTCCATCATTATACCTTTTTCTGAAaaaaaaa               ]


>consensus_12221#0 AACACGAAAGATGAATGAGGTTGTCCATGCACAAGCAAAGATCATAGCTGATCAAGATGT GATGTACAAGTACTTATCAAAGAATTTGGTTTTTGTTGCTACTGTGTCTCCTAAAGCTTC TGGTGAAATCGGATCTGCGGCACCTGAAGAAGCTTGGCTTGTGGCTTATCTTATTGATGC TGTAACCGGACGTATATTGCACCGTGTGACTCATCATGGAGCTCAAGGCCCTGTACATGC AGTTGTAAGTGAGAATTGGGTTGTATATCATTATTTCAATCTCCGAGCCCACAGATTTGA AATGGCAGTGATTGAGATATATGATCAATCTAGAGCGGACAATAAAGATGTTATGAAGCT GATACTTGGGAAGCATAATCTGTCAGCACCAACCACTTCTTATACTCGTCCAGAAGTAAT GGTGAAATCTCAGTCATACTTCTTTACCTTTTCTGTCAAAGCAATTGCAGCTACACAAAC AGCTAAGGGGATAACTTCCAAGCAGCTTCTTATTGGCACGATCGGTGACCAGGTTCTGGC ACTTGACAAACGTTTTGTTGACCCACGTCGTTCAGTAAATCCCACCCAACAAGAGAAAGA AGAGGGCATTATACCACTAACAGATGCTTTGCCTATTATTCCAACGTCCTATTTGACACA CTCTCTTCAAGTGGAAGCTCTGCGAGGAATTGTTTCTATTCCTTCAAAGTTGGAGTCAAC TACTCTTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAAC CTATGACTCACTAACTGATGAGTTCAGCTACGCGCTTCTACTCATCACAATTGCTGCATT GGTTGCTGCCATTGTTGTTACTTGGATTTGGTCTGAGAAAAAGGAGTTAAGAGATAAGTG GAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGCATCCCTTT TCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTA GGCCTTTCTTTATGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCT CCTGTGCGATTAGAAATGCTGCGAATGGCATTGAAAAACTGGTAGAGTGCCAACGGCAGG CATGGATTGCTTATGAGTTGTAAAATTTTACCGCAGCAACTAAACTGTTTAGCAGAATAT TAGTTATTGTTGTCCATAGAACATCAATCTCTTGCAACTTATTTCAACTTGGCATGTTCC ATCATTATACCTTTTTCTGAATGGGTGATCTCCTCTAAAAAGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)