These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1331 fasta sequence [AAGCTTGCTACTCAGCTGCTCTAAGCTCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC-AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA-CTGTCCCAAA-TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT-CTGGTTACCTGTAGATT-CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTTACGAAAAAAAACAAATTACATCAGT] [+] EMBL OSC5711 [AAGCTTGCTACTCAGCTGCTCTAAGCTCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGNCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGNCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTNCTCCCCTTCGTTGACCTCTACGGACGGAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATAT ] [+] EMBL AK061381 [ TCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ] [+] EMBL AK069439 [ CCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTGCTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAGTCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCA ] [+] EMBL OSS14453A [ GTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTG CAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGANGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGAGGTCTT ] [+] EMBL AK104422 [ GTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ] [+] EMBL AK103951 [ CAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAAGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTCGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ] [+] EMBL CA753697 [ ACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCCTATACCAGTGCCTGGACATGGAAGAAGTTCAAATCACCAAAAAGAGTCGGATACAGAACTTAGCTTGGGAGATTTTACCTGTCCCAAATTGGAGGAGAGAATTTTCTAGGAGC ] [+] EMBL AK104612 [ TCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTTACGAAAAAAAACAAATTACATCAGT] [+] EMBL AU032452 [ gGGAGG GA AATCTTCTAGGNGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAANCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTNGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCNGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGNGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCNGTGGNGTTTATTGCTACAGTCGGGAAACAGNNGTCAACAATGTCAGCAGGAAGTGCTNATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCNGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTNGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGNATGTGCGATCATTTTATTGCAAATGGNATAGCNGATGATGTTGCTTTTTACGAAAAAAAA ] [+] EMBL AU082176 [ cCCTATGAAAGAAGTTTTCCTGNTTACCTGTAGATTCCAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCNCTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACNCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGNCAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||