These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 909 fasta sequence [GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC-CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA] [+] EMBL AK066239 [GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGGCGACGTCGGCCTGCGCTCTGTCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGCGCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGTACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGG ] [+] EMBL AK104864 [ GAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGGAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATG ] [+] EMBL CF294812 [ GGTAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC ] [+] EMBL CF196769 [ CAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGANNCGATCCCTTGNNNGNAGGAAACGC CGTCNNNNNGATCANNGTGCTNGGGATGACnnnn ] [-] EMBL CF294811 [ CTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAACCGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCACCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAGCGGAGGATCAGGCGAATGCCAGCTAGAACCCCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA] consensusID : consensus_12226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 384 fasta sequence [CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC-GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA] [+] EMBL CF302870 [CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAA ] [-] EMBL CF302871 [ CACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCGC GGCGGTCGCGCTCCCGCCCGCCNGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA] [+] EMBL CB684700 [ AGAGGACTAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGT ] consensusID : consensus_12226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC] [+] EMBL CF195940 [CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12226#0 GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATA 60 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 AAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGG 120 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ----------------------------------CCACTGCCCCCAAACTGCTGCATCTA 26 consensus_12226#0 CGCCGGCAG-CGCTA-GCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 178 consensus_12226#2 ---CGGCAGACGCTN-NNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 56 consensus_12226#1 CGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGT 86 * * *** ***** ** **** * * *** * ** *** consensus_12226#0 CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC 232 consensus_12226#2 CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNN 110 consensus_12226#1 CGCGCTCCCGCCCGCCGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGC 146 * * **** *********************** ** * * consensus_12226#0 C-CAGCCCATT--GGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGA---TCAGT 286 consensus_12226#2 C-CAGCCCATT--NGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANN---NCANN 164 consensus_12226#1 AGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGG 206 * ** * * * **** * ** * ** consensus_12226#0 GCTGCGACAGCGGAGGCGTCT-GGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCA 345 consensus_12226#2 NNNGCGACNNNNNNNNNNTCT-GGTGGTCCGANNNNNCNNNTCACATGAAACC------- 216 consensus_12226#1 CGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCA-CTGTTAGAT 265 * * ** * * * * ** ** * * consensus_12226#0 CCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCG 405 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 AGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAAT 325 consensus_12226#0 GCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCT 465 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 GTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA- 384 consensus_12226#0 TGCAAGCAGGAAACGCCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCT 525 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 CGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACT 585 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 ATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTC 645 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 TGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTA 705 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 CCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAAT 765 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 TAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATC 825 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 GTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAA 885 consensus_12226#2 ------------------------------------------------------------ consensus_12226#1 ------------------------------------------------------------ consensus_12226#0 ATAGTTGGTAATTCTGCTAAAAAA 909 consensus_12226#2 ------------------------ consensus_12226#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||