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Oryza sativa
cluster # 12226 cluster # 12226       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12226#0 length = 909 sequences # 5  
consensus_12226#1 length = 384 sequences # 3  
consensus_12226#2 length = 216 sequences # 1  

consensusID : consensus_12226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 909
fasta sequence
                              [GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC-CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA]

[+] EMBL AK066239             [GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGGCGACGTCGGCCTGCGCTCTGTCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGCGCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGTACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGG                ]
[+] EMBL AK104864             [                                                                                              GAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGGAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATG                                                ]
[+] EMBL CF294812             [                                                                                                           GGTAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF196769             [                                                                                                             CAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGANNCGATCCCTTGNNNGNAGGAAACGC CGTCNNNNNGATCANNGTGCTNGGGATGACnnnn                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF294811             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAACCGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCACCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAGCGGAGGATCAGGCGAATGCCAGCTAGAACCCCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA]


>consensus_12226#0 GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATA AAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGG CGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCA CCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCA TTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGA GGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGA CGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAG GCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACG CCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCA GGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCA TGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAG AGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAA CGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTG CACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAAT GACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCT GCTAAAAAA



consensusID : consensus_12226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 384
fasta sequence
                              [CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC-GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA]

[+] EMBL CF302870             [CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAA ]
[-] EMBL CF302871             [ CACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCGC GGCGGTCGCGCTCCCGCCCGCCNGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA]
[+] EMBL CB684700             [                                                                                                                                     AGAGGACTAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGT                ]


>consensus_12226#1 CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCC ATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCCGCCGCCGGCCTCCGCTCT GCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTAC CTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATT AGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCG TACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAA TAGTTGGTAATTCTGCTTAAAAAA



consensusID : consensus_12226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence
                              [CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC]

[+] EMBL CF195940             [CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC]


>consensus_12226#2 CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACC GCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATT NGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNN NNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12226#0      GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATA 60
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      AAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGG 120
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ----------------------------------CCACTGCCCCCAAACTGCTGCATCTA 26
                                                                                   

consensus_12226#0      CGCCGGCAG-CGCTA-GCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 178
consensus_12226#2      ---CGGCAGACGCTN-NNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 56
consensus_12226#1      CGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGT 86
                          *   *   ***    *****      ** ****  *   *  ***  *  **  ***

consensus_12226#0      CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC 232
consensus_12226#2      CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNN 110
consensus_12226#1      CGCGCTCCCGCCCGCCGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGC 146
                       * *     **** ***********************          **   *   *    

consensus_12226#0      C-CAGCCCATT--GGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGA---TCAGT 286
consensus_12226#2      C-CAGCCCATT--NGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANN---NCANN 164
consensus_12226#1      AGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGG 206
                         * **  * *   * ****        *         ** *              **  

consensus_12226#0      GCTGCGACAGCGGAGGCGTCT-GGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCA 345
consensus_12226#2      NNNGCGACNNNNNNNNNNTCT-GGTGGTCCGANNNNNCNNNTCACATGAAACC------- 216
consensus_12226#1      CGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCA-CTGTTAGAT 265
                            * *           ** * *  *   *         **   ** * *        

consensus_12226#0      CCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCG 405
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      AGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAAT 325
                                                                                   

consensus_12226#0      GCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCT 465
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      GTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA- 384
                                                                                   

consensus_12226#0      TGCAAGCAGGAAACGCCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCT 525
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      CGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACT 585
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      ATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTC 645
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      TGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTA 705
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      CCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAAT 765
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      TAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATC 825
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      GTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAA 885
consensus_12226#2      ------------------------------------------------------------
consensus_12226#1      ------------------------------------------------------------
                                                                                   

consensus_12226#0      ATAGTTGGTAATTCTGCTAAAAAA 909
consensus_12226#2      ------------------------
consensus_12226#1      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)