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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 445 fasta sequence
[TGCTCGCGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG-GTNCGCCCGTGGCGT-CGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG-TGCAAGGAGGC-TTGCG-GCGGCGCNGCAACGGACGGCCATGCCCCCGNAGCTGGCGC-TGGTGCTGGNCGCCGGCGCTGGCG-CGCCGTCGGGGCTGGCGCTAAGGCTGCCATCGGGGTTGGTACCGGACTGGCGCTGGCGC-TGGCGCCGGCGTCNGAACTTGCGCTAAAGCCGCAATCGGGGCTGGAAC]
[+] EMBL C72630 [TGCTCGCGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG GTNCGCCCGTGGCGT CGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGC TTGCG GCGGCGCNGCAACGGACGGCCATGCCCCCGNAGCTGGCGC TGGTGCTGGNNGCCGGCGCTGGCG CGCCGTCGGGGCTGGCGCTAAGGCTGCCATCGGGGTTGGTACCGGACTGGCGCTGGCGC TGGCGCCGGCGTCNGAACTTGCGCTAAAGCCGCAATCGGGGCTGGAAC]
[+] EMBL AU063820 [ TCGCAATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTNGCCGCCGTGGTGGCGGCGT CGCCCGTGGCGT CGGCGGCCACGTACGGNTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGNAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGC TTANGAGCGGCGCCGCAACGGACGGCCATGCCCCACNGGCTGGCGC TGGTNCTGG CGCCGGCGCTGGCG CGCCGTAGGGTCTt ]
[+] EMBL C72959 [ CGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG GTNCGCCCGTGGCGTCCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATGTTGCAAGGAGGC TTGCG GCGGCGCNGC ACGGACGGCCATGCCCCCNGAGCTGGCGC TGGTGCTGGCAGCCGGCGCTGGCG CGCCGTCGGGGCTGGCG TAAAGCTGCCATCGGGGTTNGTACCGGACTTGCG TGGCGCTTGGCG CGGCGTC GGACTTGC NTAAAGCCGC ATCGGGtt ]
[+] EMBL AU064776 [ CGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGCGTNCGCCCGTGGCGT CGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGCTTTGCG GCGNCGCCGC ACGGACGGCCATGCCCCCGCCGCTGGCGCTTGGTGCTTGGCGCCGGCGNTGGCGCCGCCGTCG ]
[+] EMBL AU064124 [ CGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG GT CGCCCGTGG GT CGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGC TTGCG GCGGCGCNCCACGGGACGGC ]
[+] EMBL AU063994 [ TCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG GTNCGCCCGTGGCGTNCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGC TTGCG GCGGCGCN CCACGGACGGCCA ]
[+] EMBL C93648 [ TCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGG GTCCGCCCGTGG GTCCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATG TGCAAGGAGGC TTGCG GCGGCGCNGCAcc ]
consensusID : consensus_12233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 417 fasta sequence
[TCGCGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGGTNCGCCCGTGGGTNCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATGTGCAAGGAGG-TTNCG-GCGGCGCNCCACGGACGGCCATG-CCCCGCGGCTGGNC-TGGTGCTTGCGCC-GCGCTTG-GCNGCCGTCGGGTTCTTGCGGTAAAGCTNCCATCGGGTTTGCGCCCGAGCTTGCGNTTGCGTTTGCGCCCGCGTCGAGTTTGCGTNAAGC]
[+] EMBL AU064018 [TCGCAATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAG GACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGNGTNCGCCCGTGGGT CGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATGTGCAAGGAGG CTTCGAGCGGCGC CCACGGACGGCCATG CCCCGCGGCTGGNC TGGTGCTTGCGCC GCGCTTG GCNGCCGTCGGGTTCTTGCGGTAAAGCTNCCA ]
[+] EMBL AU063898 [ GATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGGTNCGCCCGTGGGTNCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATGTGCAAGGAGG TTNCG GCGGCGCNCCACGGACGGCCATGCCCCCGCCGCTGGGCTTGGTGCTTGCGCCGGCG TTGCGCCGCCGTCGGG CTTGC GTNAAGCTTCCATCGGGTTTGCGCCCGAGCTTGCGNTTGCGTTTGCGCCCGCGTCGAGTTTGCGTNAAGC]
[+] EMBL AU063870 [ GATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCACCACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGGACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGGTNCGCCCGTGGGTCCGGCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGACGAGGCCTGCACCAAAATGTGCAAGGAGGCTTGCG GCGGCGCCCCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12233#0 TGCTCGCGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCAC 60
consensus_12233#1 ---TCGCGATCGATTCGATCGTCGTCGACGCTTCGATTAATTCTCGCTCGCAGAGACCAC 57
*********************************************************
consensus_12233#0 CACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGG 120
consensus_12233#1 CACCAGTAGCAGCATCCAGCTGATTAAATTAAGCTCGCGGCAATGGCGCAGGTGAGCAGG 117
************************************************************
consensus_12233#0 ACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGGTNCGCCCGTGGCGTCG 180
consensus_12233#1 ACGGTCGTGGCGGCGCTGCTCCTCGTCGCCGCCGTGGTGGCGGGTNCGCCCGTGGGTNCG 177
******************************************************* **
consensus_12233#0 GCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGAC 240
consensus_12233#1 GCGGCCACGTACGGCTGCTTCGAAGACTGCTACGAGCGCTGCGCCTCCGGGAAGAAGGAC 237
************************************************************
consensus_12233#0 GAGGCCTGCACCAAAATGTGCAAGGAGGCTTGCGGCGGCGCNGCAACGGACGGCCATGCC 300
consensus_12233#1 GAGGCCTGCACCAAAATGTGCAAGGAGG-TTNCGGCGGCGCNCCA-CGGACGGCCATGCC 295
**************************** ** ********** ** **************
consensus_12233#0 CCCGNAGCTGGCGCTGGTGCTGGNCGCCGGCGCTGGCGCGCCGTCGGGG-CTGGCGCTAA 359
consensus_12233#1 CC-GCGGCTGGN-CTGGTGCTTGC-GCCG-CGCTTGGCNGCCGTCGGGTTCTTGCGGTAA 351
** * ***** ******** * **** **** * ********* ** *** ***
consensus_12233#0 GGCTGCCATCGGGGTTGGTACCGGACTGGCGCTGGCGCTGGCGCCGGCGTCNGAACTTGC 419
consensus_12233#1 AGCTNCCATCGGGTTTGCGCCCGAGCTTGCGNTTGCGTTTGCGCCCGCGTCG-AGTTTGC 410
*** ******** *** *** ** *** * *** * ***** ***** * ****
consensus_12233#0 GCTAAAGCCGCAATCGGGGCTGGAAC 445
consensus_12233#1 G-TNAAGC------------------ 417
* * ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||