These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2231 fasta sequence [CTCTCCGCCGAGGAGCGCCTCCGCCGCGAGCGCGCACGGGAGCGCGGCCTCGGCGTCACGCGCTACGAGTGGCGCGCCCGCCTCCCCGGCACCCCCGCCTCCCGCGCCGGCATTGTCGTGCCGCTCCCCTCTGGGGTTTACTTCCAGGATTTGTCTGGTGCTGAACCTGTACTCAAGCTGCAAAGTTCAGCCACATCCCCCATCATTGACCCACATCTGTCTCCAGATGGGAGCATGATTGCGTATGTGCGGGATGATGAGTTGCATACAGTGGGGTTCTCTGATGGGCAAACTACCCAGTTGACCTATGGTGCAAGCGAAAGTGGGAAGATCCACGGACTTGCTGAGTATATTGCACAGGAAGAGATGGAAAGGAAGATGGGATTCTGGTGGTCTCCTGATAGCAAACACCTTGCATTTACTGAAGTTGACTCATCTGAAATCCCACTGTATAGAATTATGCACCAGGGTAAAAGTTCGGTTGGTCCAGATGCTCAAGAAGATCATGCTTACCCCTTTGCAGGGGCTGCTAATGTCAAAGTGCGCCTTGGAGTTGTTTCTTCCCATGGAGGAGAAATAACTTGGATGGATCTCCTATGTGGAGAACCAAATAGTATCCATGGTGATGAAGAATATCTTGCTAGAGTAAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAATAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAATGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA-GC-AAAACCCGGACATATAGGTCTCTAC-GGCTGGAGCTATGGTGGCTTTCTCTC-GGCAATGTGCCTCGC-GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA-CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG-AACCTCCGAGGGAGGCTGCTGCTGATCCA-CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC-GGATCTATATGGAAGAGAGGATCTGGGATTTTGT-AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT-ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT-GTT-GTTACA-GTATGTTGAAGCTATTTCATT-TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGCTGTGATAAGGATGGCAGATAGATGTTAATTTCACATTGCCTTCC] [+] EMBL AK100736 [CTCTCCGCCGAGGAGCGCCTCCGCCGCGAGCGCGCACGGGAGCGCGGCCTCGGCGTCACGCGCTACGAGTGGCGCGCCCGCCTCCCCGGCACCCCCGCCTCCCGCGCCGGCATTGTCGTGCCGCTCCCCTCTGGGGTTTACTTCCAGGATTTGTCTGGTGCTGAACCTGTACTCAAGCTGCAAAGTTCAGCCACATCCCCCATCATTGACCCACATCTGTCTCCAGATGGGAGCATGATTGCGTATGTGCGGGATGATGAGTTGCATACAGTGGGGTTCTCTGATGGGCAAACTACCCAGTTGACCTATGGTGCAAGCGAAAGTGGGAAGATCCACGGACTTGCTGAGTATATTGCACAGGAAGAGATGGAAAGGAAGATGGGATTCTGGTGGTCTCCTGATAGCAAACACCTTGCATTTACTGAAGTTGACTCATCTGAAATCCCACTGTATAGAATTATGCACCAGGGTAAAAGTTCGGTTGGTCCAGATGCTCAAGAAGATCATGCTTACCCCTTTGCAGGGGCTGCTAATGTCAAAGTGCGCCTTGGAGTTGTTTCTTCCCATGGAGGAGAAATAACTTGGATGGATCTCCTATGTGGAGAACCAAATAGTATCCATGGTGATGAAGAATATCTTGCTAGAGTAAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAATAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAATGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGT ] [+] EMBL AK060335 [ AAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAACAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAACGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCCTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGGCTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGCTGTGATAAGGATGGCAGATAGATGTTAATTTCACATTGCCTTCC] [+] EMBL CB668157 [ ATTGGACACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAGAAACCTCCGAGGGAag ] [+] EMBL CA764172 [ ggggGGGGACTTGCAAGGGAAGGCTCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGNCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAN AACCTCCGAGGAAGGCTGCTGCTGATCCA CGGTNTGATAGACGAGAACGNGCATTTNAGGCCCCCGGNGAGGCTCATNAACTTGCTGATGGCGGA GGGNANCCCTACGATATCCTnc ] [+] EMBL OSS2577A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTCGGGCAATGTGCCTCGCGGGGTTTTCCCGACAC ] [+] EMBL OSS4388A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGNGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGNGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATC ] [+] EMBL OSS3055A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGANGGAAAGGATGAGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCNATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTNACTCATGGATAAGTACAGTTGTNATGAGAGCTCAGTTCCTGCGTAGTAAGGGT ] [-] EMBL CB668158 [ CAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGGGGTGATAAGGATGGCAGATAGATGTTAATTTCA ] [-] EMBL CA762393 [ tnTGGAAGATGGACAATCGAGGAACCGCAGGACGCGGTNTGCAGTNTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTN GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTAaaaaa ] [+] EMBL BI805523 [ GCTCANAT CNACATCGTTCGTGTCGAT CTGAAGATCAGTTACCA GTGCCGAGTGGCTAATAAAGAAAGGCCTACACTAAAACCCGGACATATAGGTCTCTACAGGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCA TTGTCCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACACCTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCACCGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACCAGGATCTATATGGAAGAGAGGATCTGGGATTTTGTGAGAGAGGAACCTGTGAAT TTAAGAGA GAAGAGAGAGAGAGAACTGACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGATGGTTGGTTACANGTATGTTGAAGCTATTTCATTGTCCATCt ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||