These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2271 fasta sequence [TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA-CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA-CCTTGACTCCATGAG-CAGGAAGATAA-CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC-ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA-TGGTGTTTGAAATTACA-TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA-CTGAAGCATGACA-GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG-GCTGGGGTTTCA-GTTTAAAATCTGGGGGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATATATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG] [+] EMBL AK067743 [TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATG ] [+] EMBL AK072383 [ ACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGGAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGGACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GCTGGGGTTTCA GTTTAAAATCTGGGGGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATATATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG] [+] EMBL CF322779 [ ACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATT ] [-] EMBL CB672079 [ CTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTTTGGATGCATGTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACTTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACTTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAATTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTTTCCTATTGCGCTTA GTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GGTGGGGTTTCA GTTTAAAATTTGGGGGTTGTGGGCTTTAAATGAGGCC ] [-] EMBL CB672081 [ TTCTCTTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGATATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAATTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTTTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTTGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GCTGGGGTTTCA GTTTAAAATCTGGGGGTTAAGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAAataaaaaga ] [-] EMBL CB678428 [ CTTGTCTGGATGCATTTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGATATGCAGATGTGGGAGGTGAATGAGAAAGGAACCCTCATTAGCAGTTATTCAAGATTATGTGCCGCGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCCCGTGCATGGTTAGCATCTGGGAGTAAAGGAGAAATATGCCTGGGGTTTTTCAC CCTTGTCTCCATGAG CAGGAAGATAT CCGTGAGAATATCAGCCCTGGAAAAGGTTTTGGGGAGTGCATTCATAAGAAAAGACACGTGCATATCC ATTGAAGTTTGGAGCGGGAGGAATTTTGTTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAATTCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCGTATTGCGCTTT CTGAAGCATCCCA GGATGGAATAGATAAGTAGGGAAAAGACCCTTGAGCATGTATCAGGTAAAGCTCCCAAAAAGAACATCCTTTAAAAGTGCTGGGGTTTCAGGTTTAAAATCTGGGGGTAGGGG ] [-] EMBL CB966276 [ ACCTCATTAGCAGTTACTCAAGATTATGTGCCCCGGTGGAATCCCACAATAAAGGAGTTGTAACTACCAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAACCCTTGACTCCATGAGCCAGGAAGATAACCCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCAACTGAAGTTTGGACCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCACTGGTGTTTGAAATTACACTGTTGAGGTATCCCATAATTCTCCTATGGCGCTTATCTGAAGCATGACACGGATGGAATAGATAAGTAGGGAAAAGAGCCct ] consensusID : consensus_12238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAAAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACACGGGA] [+] EMBL CB672080 [AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAAAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACACGGGA] [+] EMBL CB672078 [AGCCTCCCTTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTGTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGATATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAAATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATGAAGGGTTCAGTCAACTTGCGAACGAGGAGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCAGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAG ] consensusID : consensus_12238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGGTACCCTGTATTTTATTCGTACTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCANAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAAATGGTGCGAGCTGAATGAGA] [+] EMBL CA755352 [ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGGTACCCTGTATTTTATTCGTACTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCANAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAAATGGTGCGAGCTGAATGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12238#0 ------------TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTC 48 consensus_12238#1 ---------------AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTC 45 consensus_12238#2 ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACAT 60 ** * * ** * * * ** * ** consensus_12238#0 CCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCC 108 consensus_12238#1 CCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCC 105 consensus_12238#2 TACTGAAAATAAATCACTACAGCATAA-ATAATATGGAGGTACCCTGTATTTTATTCGTA 119 * * * * * * * ** * ** * *** * ** ** consensus_12238#0 GCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCAC 168 consensus_12238#1 GCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCAC 165 consensus_12238#2 CTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCA 179 ** * ** * ** * * ** ** * * * consensus_12238#0 TTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTC 228 consensus_12238#1 TTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTC 225 consensus_12238#2 TCATGTGCACAGTGAAA--------GGACTTCCAA-AGAAGACAAGCATTCTAGTCGTTT 230 * * * * **** * ***** * ** * * **** * ** consensus_12238#0 CTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGG-CAGAAA 287 consensus_12238#1 CTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGG-CAAAAA 284 consensus_12238#2 CATATC-CGAAGATCTTGTACACGTAC-CANAGATTGATGGTGTATCTCTTGGTCTCACT 288 * * ** * * * * * * *** * * * * * * ****** * * consensus_12238#0 AATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTC---TGGTA---CCGAA 341 consensus_12238#1 AATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTC---TGGTA---CCGAA 338 consensus_12238#2 GCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGAT 348 *** * * * * ** ** ** * ***** * ** consensus_12238#0 AGTATGTTCATGGGGCAT---ACACAGATTCATATGGATTTGATAACATTGATGAGTGGG 398 consensus_12238#1 AGTATGTTCATGGGGCAT---ACACAGATTCATATGGATTTGATAACATTGATGAGTGGG 395 consensus_12238#2 CATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAA 408 *** * ** * ** * *** * * * ** * * * ** * consensus_12238#0 GTCGGCCATTTCCTGATCTTCAAAGATTTC------CATCATCCAGAAT--TGATAAAGG 450 consensus_12238#1 GTCGGCCATTTCCTGATCTTCAAAGATTTC------CATCATCCAGAAT--TGATAAAGG 447 consensus_12238#2 ACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAG 468 * * ****** * * *** * *** ** ***** ** * * * consensus_12238#0 GTTCAGTCAACT--TGCGAACAA----GGTGCATG---GAATGGGCTTGAAATTC---GG 498 consensus_12238#1 GTTCAGTCAACT--TGCGAACAA----GGTGCATG---GAATGGGCTTGAAATTC---GG 495 consensus_12238#2 TTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGG 528 **** * * * *** * *** ** * *** ** * ** ** consensus_12238#0 AATCCATTTAATGAAAGGGA------TAAGTTTACAGGCTGTGAATGGAAACACACCCAT 552 consensus_12238#1 AATCCATTTAATGAAAGGGA------TAAGTTTACAGGCTGTGAATGGAAACACACCCAT 549 consensus_12238#2 AGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAA 588 * *** ** ** * * * ** ** * ** *** * * ** consensus_12238#0 ATTGGAC-ATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTG 611 consensus_12238#1 ATTGGAC-ATTAAAACG------------------------------------------- 565 consensus_12238#2 ATGGTGCGAGCTGAATGAGA---------------------------------------- 608 ** * * * ** * consensus_12238#0 ATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATA 671 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGG 731 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 GTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCA 791 consensus_12238#1 ------------TGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCA 613 consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAG 851 consensus_12238#1 TAACTATTTCAGAG----------AGCTTGACCGCCCCATCATCCTGTCCATCTCACCAG 663 consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 GAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGA 911 consensus_12238#1 GAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGA 723 consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTT 971 consensus_12238#1 TAACACGGGA-------------------------------------------------- 733 consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATT 1031 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGC 1091 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGT 1151 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAA 1211 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATG 1271 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATC 1331 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACA 1391 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACT 1451 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 ATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGA 1511 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATA 1571 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATA 1631 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 GCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATG 1691 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATA 1751 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AAGGAGTTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAG 1811 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAACCGCGAGAATAT 1871 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCACTG 1931 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAAT 1991 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CACATGGTTCCATGGTGTTTGAAATTACATGTTGAGGTATCCCATAATTCTCCTATTGCG 2051 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 CTTACTGAAGCATGACAGGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATC 2111 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 AGGTAAAGCTACCAAAATGAACATCCTTTAAAAGGCTGGGGTTTCAGTTTAAAATCTGGG 2171 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 GGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATA 2231 consensus_12238#1 ------------------------------------------------------------ consensus_12238#2 ------------------------------------------------------------ consensus_12238#0 TATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG 2271 consensus_12238#1 ---------------------------------------- consensus_12238#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||