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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1704 fasta sequence
[TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCCCTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGCAACATCATTGAAAAATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTGTTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAAGAAAATATGAATATTGCCTCCATGTTGAATTTGAACTCTTGTTATGTCACTTCATCTCTGCATCCGGCTGTCCTCTAAGATTGATGCAAACAAAAGAACAACAAAAATCCTTGAATATTAAGCTCACAAGGTTTTCCCCTGTTCCTGTTCAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA]
[+] EMBL AK059468 [TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCCCTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGCAACATCATTGAAAAATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTGTTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAAGAAAATATGAATATTGCCTCCATGTTGAATTTGAACTCTTGTTATGTCACTTCATCTCTGCATCCGGCTGTCCTCTAAGATTGATGCAAACAAAAGAACAACAAAAATCCTTGAATATTAAGCTCACAAGGTTTTCCCCTGTTCCTGTTCAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA]
consensusID : consensus_1224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1457 fasta sequence
[CATTTATGTCATGATAAGGCATGGAAAATTAGGGCTCATACCTTCATACCATGCTAATGATTTATAGCTTCAACTCGTCTTCCTCCATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA]
[+] EMBL OSA495796 [CATTTATGTCATGATAAGGCATGGAAAATTAGGGCTCATACCTTCATACCATGCTAATGATTTATAGCTTCAACTCGTCTTCCTCCATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1224#0 TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTAC 60
consensus_1224#1 ------------------------------------------------------------
consensus_1224#0 TCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACC 120
consensus_1224#1 ------------------------------------------------------------
consensus_1224#0 AGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGC 180
consensus_1224#1 ------------------------------------------------------------
consensus_1224#0 ATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAA 240
consensus_1224#1 ------------------------------------------------------------
consensus_1224#0 CTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCAT 300
consensus_1224#1 -----------------------------CATTTATGTCATGATAAGGCATGG--AAAAT 29
*** * * * * *** * * **
consensus_1224#0 CCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCC 360
consensus_1224#1 TAGGGCTCATACCTTCATACCATGC---TAATGATTTATAGCTTCAACTCGTCTTCCTCC 86
**** * * * * * *** ** * **** ** ***
consensus_1224#0 CTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGC-----AACATCATTGAAA 415
consensus_1224#1 ATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGA 146
* ** ** * * ** * * * ** **** * ** * *
consensus_1224#0 AATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTG 475
consensus_1224#1 TAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGA 206
* *** * * * ** * *** ** * * * * **
consensus_1224#0 TTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAA 535
consensus_1224#1 AAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCAT-ACATTGAGGAGCATGGA 265
* * * * * * * * ** *** **** **** *
consensus_1224#0 GAAAATA-----TGAATATTGCCTCCATGT-TGAATTTGAACTCTTGTTATGTCACTTCA 589
consensus_1224#1 CATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGC 325
* * ** ******* ** **** * ** * **
consensus_1224#0 TCTCTGCATCCGGCTGTCC-TCTAAGATT-GATGCAAACAAAAGAACAACAAAAATCCTT 647
consensus_1224#1 AGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAA 385
*** * * * ** *** ** ** * * *** * * * *
consensus_1224#0 GAATATTAAGC--TCACAAGGTTTTCCCCTGTTCCTGTT--CAGGTGGTCTGCCATTGCA 703
consensus_1224#1 GAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCA 445
*** * * * *** ** ** *** ** *******************
consensus_1224#0 ACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAA 763
consensus_1224#1 ACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAA 505
********************************************************* **
consensus_1224#0 AAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTG 823
consensus_1224#1 AAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTG 565
************************************************************
consensus_1224#0 AACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAG 883
consensus_1224#1 AACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAG 625
************************************************************
consensus_1224#0 TGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATA 943
consensus_1224#1 TGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATA 685
************************************************************
consensus_1224#0 GCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCT 1003
consensus_1224#1 GCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCT 745
************************************************************
consensus_1224#0 TCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCC 1063
consensus_1224#1 TCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCC 805
************************************************************
consensus_1224#0 ACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACC 1123
consensus_1224#1 ACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACC 865
************************************************************
consensus_1224#0 GCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAG 1183
consensus_1224#1 GCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAG 925
************************************************************
consensus_1224#0 GGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAA 1243
consensus_1224#1 GGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAA 985
************************************************************
consensus_1224#0 GAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATC 1303
consensus_1224#1 GAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATC 1045
************************************************************
consensus_1224#0 GGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGC 1363
consensus_1224#1 GGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGC 1105
************************************************************
consensus_1224#0 TGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAG 1423
consensus_1224#1 TGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAG 1165
************************************************************
consensus_1224#0 AATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAG 1483
consensus_1224#1 AATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAG 1225
************************************************************
consensus_1224#0 CCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATC 1543
consensus_1224#1 CCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATC 1285
*********** ********** *************************************
consensus_1224#0 CATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAG 1603
consensus_1224#1 CATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAG 1345
************************************************************
consensus_1224#0 TCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGT 1663
consensus_1224#1 TCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGT 1405
***** *****************************************************
consensus_1224#0 ACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA----------- 1704
consensus_1224#1 ACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA 1457
*****************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||