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Oryza sativa
cluster # 1225 cluster # 1225       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1225#0 length = 1589 sequences # 1  
consensus_1225#1 length = 476 sequences # 1  

consensusID : consensus_1225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1589
fasta sequence
                              [GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA]

[+] EMBL AK105344             [GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA]


>consensus_1225#0 GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCG ATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGG AAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGG GAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTC TCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGC GTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTAC GTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAAC GCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGC TACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACG CTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCG CTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTT GGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCG CTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTT TTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGC TTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGAT CCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGA TGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCAT ATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCA GAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAA AAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAG ACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGC CCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGA ACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTT GTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTT TGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTT TTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTG TGCATTCTTGAATCCCCAAAGTTTTGTTA



consensusID : consensus_1225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence
                              [AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG]

[+] EMBL BI808832             [AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG]


>consensus_1225#1 AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACC ACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACAC AAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCT TACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCT TGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCC CAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGC CGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGG AATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1225#0      GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCG 60
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      ATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGG 120
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      AAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGG 180
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTC 240
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      TCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGC 300
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTAC 360
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAAC 420
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGC 480
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      TACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACG 540
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      CTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCG 600
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      CTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTT 660
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCG 720
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      CTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTT 780
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      TTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGC 840
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      TTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGAT 900
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      CCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGA 960
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      TGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCAT 1020
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      ATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCA 1080
consensus_1225#1      ------------------------------------------------------------
                                                                                  

consensus_1225#0      GAAAAGGCTTTAGAGCTTATGA--AAGGAAATGAGAAACCA--ACAACTCCGCCTGCGCA 1136
consensus_1225#1      AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACC 60
                       *** *  ****** *******  **** ****** * ***  **  * *** ** * * 

consensus_1225#0      ACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACAC-AAGAATGCCCTCGAGAGAG 1195
consensus_1225#1      ACAAAAGATGGAAGATCAG--GATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGAC 118
                      *************   * *  ** ******* * * **** ****************** 

consensus_1225#0      CAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 1255
consensus_1225#1      ACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 178
                        **********************************************************

consensus_1225#0      CTAGCCCTACGCCGCCCTCTGAT-ACTCATAGTG-AAGCCACCT---CAGAAGCAAAATC 1310
consensus_1225#1      CTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATT 238
                      **  ******************* ********** ** *****    * *** * **** 

consensus_1225#0      T----GCAGGAAGAACCAGTTGGGA--TGAGCT---GATGCAT---AAGCTTTTCACCAG 1358
consensus_1225#1      CTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCAC 298
                            * * ***** *  ******  *** **    *****    **** ***  *** 

consensus_1225#0      GG-ACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTG 1417
consensus_1225#1      CCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAG 358
                         * * *   *  * * ***               * **   *  *   *   ***  *

consensus_1225#0      AGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATT--CTTTTGCGTGCATATACA 1475
consensus_1225#1      GCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTT 418
                          *      * **  *  *  *     ***** *      *   * *  *    *   

consensus_1225#0      GAAGTTCAACATGA-AAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACT 1534
consensus_1225#1      GGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATA-ATTACACGGAAAG- 476
                      * * ***     *  *****  * ** **** *   * **** *       *** ***  

consensus_1225#0      GTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA 1589
consensus_1225#1      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)