These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1589 fasta sequence [GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA] [+] EMBL AK105344 [GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA] consensusID : consensus_1225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG] [+] EMBL BI808832 [AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1225#0 GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCG 60 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 ATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGG 120 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 AAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGG 180 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTC 240 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGC 300 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTAC 360 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAAC 420 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGC 480 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACG 540 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCG 600 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTT 660 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCG 720 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTT 780 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGC 840 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGAT 900 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGA 960 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCAT 1020 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 ATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCA 1080 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GAAAAGGCTTTAGAGCTTATGA--AAGGAAATGAGAAACCA--ACAACTCCGCCTGCGCA 1136 consensus_1225#1 AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACC 60 *** * ****** ******* **** ****** * *** ** * *** ** * * consensus_1225#0 ACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACAC-AAGAATGCCCTCGAGAGAG 1195 consensus_1225#1 ACAAAAGATGGAAGATCAG--GATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGAC 118 ************* * * ** ******* * * **** ****************** consensus_1225#0 CAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 1255 consensus_1225#1 ACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 178 ********************************************************** consensus_1225#0 CTAGCCCTACGCCGCCCTCTGAT-ACTCATAGTG-AAGCCACCT---CAGAAGCAAAATC 1310 consensus_1225#1 CTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATT 238 ** ******************* ********** ** ***** * *** * **** consensus_1225#0 T----GCAGGAAGAACCAGTTGGGA--TGAGCT---GATGCAT---AAGCTTTTCACCAG 1358 consensus_1225#1 CTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCAC 298 * * ***** * ****** *** ** ***** **** *** *** consensus_1225#0 GG-ACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTG 1417 consensus_1225#1 CCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAG 358 * * * * * * *** * ** * * * *** * consensus_1225#0 AGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATT--CTTTTGCGTGCATATACA 1475 consensus_1225#1 GCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTT 418 * * ** * * * ***** * * * * * * consensus_1225#0 GAAGTTCAACATGA-AAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACT 1534 consensus_1225#1 GGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATA-ATTACACGGAAAG- 476 * * *** * ***** * ** **** * * **** * *** *** consensus_1225#0 GTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA 1589 consensus_1225#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||