These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3543 fasta sequence [TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCGCGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGCGCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG-CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA-GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTGATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAATTGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAACCTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTACAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACCCAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGAGGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTGCCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAACATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100422 [TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCGCGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGCGCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTGATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAATTGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAACCTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTACAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACCCAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGAGGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTGCCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAACATTACTA ] [+] EMBL AU163382 [ GCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTC ] [+] EMBL C97414 [ GTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGGACGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCAGGGAGGAAGGTGTGGANGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACANGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGANCGG ] [+] EMBL CB669338 [ TCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGT ] [+] EMBL CF322878 [ TCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAAGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAG ACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTG ] [+] EMBL AK058622 [ CAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATT ] [+] EMBL CA766326 [ cAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGTTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCTATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGGTGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAa ] [+] EMBL AU164468 [ TCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence [CCCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99689 [CCCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL C97413 [ gnTCTGCAGNCCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGNGCCTCTGTNTGACAGNTACAACGNGCCAAACTCATGGCGCCTCAGCAAGCGCCGNGGGTAATTTGTCTGTATATAGTTTTTACTTCCNCTNTAGCTGCTCTTTATGCAATGTAAGCTGNGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12250#0 TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCG 60 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGG 120 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGG 180 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACC 240 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCG 300 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTT 360 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGT 420 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGC 480 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGC 540 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGA 600 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGG 660 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGA 720 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGT 780 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CGCGGCGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTG 840 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGA 900 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TGAATTACCAGGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGC 960 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCA 1020 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGT 1080 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGA 1140 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTAC 1200 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGA 1260 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAA 1320 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTA 1380 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCT 1440 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTG 1500 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATAC 1560 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCC 1620 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGG 1680 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGC 1740 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTG 1800 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATAC 1860 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGA 1920 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTG 1980 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAAT 2040 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAAC 2100 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTA 2160 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACC 2220 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGA 2280 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 GGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTG 2340 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGG 2400 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGG 2460 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCT 2520 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAAC 2580 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGA 2640 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTC 2700 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCA 2760 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 CCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTG 2820 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGG 2880 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 ACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCA 2940 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCA 3000 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 TTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAG 3060 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAG 3120 consensus_12250#1 -----------------------------------------------------------C 1 consensus_12250#0 CCATTGACCCAAGA-TGGCTT-GTTGAACTGGCACCGAGG-TTCTACAGATCTGCAGACC 3177 consensus_12250#1 CCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACC 61 ****** ***** * ****** **************** * ******************* consensus_12250#0 CAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACA 3237 consensus_12250#1 CAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACA 121 ************************ *********************************** consensus_12250#0 ACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTT 3297 consensus_12250#1 ACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTT 181 ************************************************************ consensus_12250#0 TACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAA 3357 consensus_12250#1 TACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAA 241 ************************************************************ consensus_12250#0 TATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCT 3417 consensus_12250#1 TATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAA 301 ************************************************** consensus_12250#0 CTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAG 3477 consensus_12250#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 331 * * ** * * ** * consensus_12250#0 TTGATCCTGAAACATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3537 consensus_12250#1 ------------------------------------------------------------ consensus_12250#0 AAAAAA 3543 consensus_12250#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||