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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 611 fasta sequence
[TCAATTTTGGCATTTTTGCTATACTGCTTGCAGATCCA-TGGGGC-TTGGGTTA-GCCTGAGGTTTATCCTCTGAT-GCCGCGATGATG-TTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCGCAACGTG-TGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTGCC-AGACAGC-GCGGCGGAAGCGGAGAGGTAC-AGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCC-ATCATGATGAGAA-C-ATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG-TG-AACTGGTTTATTATTTTAAGAA--CT--C---GGCCTGTGTGCATG-C-AAAAAGAAAAAGCAAGA-TTGGTAAATGTAATGTACTTTTA-CTTTATTTGTTGGTTCAGCACTTGATTTTTTTCTTTTATCAACAACTTACCTATGTGAGTGTTGACAGAGCCTAAGAT-ATAAATCATTTCTATTATAAAAATAAACAGAATTGCTAACTGTCTACTGAAAAAA]
[+] EMBL BI804325 [TCAATTTTGGCATTTTTGCTATACTGCTTGCAGATCCACTGGGGC TTGGGTTAGGCCTGAGGTTTATCCTCTGATGGCCGCGATGATG TTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCGCAACGTG TGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTGCC AGACAGC GCGGCGGAAGCGGAGAGGTAC AGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCC ATCATGATGAGAACC ATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTTGAAACTGGTTTATTATTTTAAGAAACCTTCCGGGGGCCTGTGTGCATG C AAAAAGAAAAAGCAAGA TTGGTAAATGTAATGTACTTTTA CTTTtaaaaaaa ]
[+] EMBL BI801494 [ CAATGTTTGCATTTTTGCTATACTGCTTGCAGATCCA TGGGGC TT GGTTA GCCTGAGGTTTATCCTCTGAT GCCGCGATGATGTTTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCGCAACGTGCTGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTGCCAAGACAGCAGCGGCGGAAGCGGAGAGGTACAAGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCAATCATGATGAGAA CAATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG TG AACTGGTTTATTATTTTAAGAA CT C GGCCTGTGTGCATG CAAAAAAGAAAAAGCAAGA TTGGTAAATGTAATGTACTTTTA CTTTATTTGTTGGTTCAGCACTTGATTTTTTTCTTTTATCAACcaaaaa ]
[+] EMBL BI798036 [ ttCAGATCCA TGGGGCGTTGGGTTA GCCTGAGGTTTATCCTCTGAT GCCGCGATGATG TTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCGCAACGTG TGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAAC CAGTGCC AGACAGC GCGGCGGAAGCGGAGAGGTAC AGCATGCATGGTTTCC CCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCC ACTCCGATCGACCC ATCATGATGAGAA C ATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG TG AACTGGTTTATTATTTTAAGAA CT C GGCCTGTGTGCATG C AAAAAGAAAAAGCAAGA TTGGTAAATGTAATGTACTTTTACCTTTATTTGTTGGccccccctt ]
[+] EMBL BI803702 [ GGTTGTGTTCCAGCTTGGGCGCAACGTG TGCACCAACCCTGAAGTCAAGATCAGCAAGCGCTACCGCCGCAACGCAGTGCC AGACAGC GCGGCGGAA CGGAGAGGTAC AGCATGCATGGTTTCC CCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCAATCATGATGAGAA CAATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG TG AACTGGTTTATTATTTTAAGAA CT C GGCCTGTGTGCATGCC CAAAAGAAAAAGC AGA TTGGTAAATGTAATGTACTTTTA CTTTATTTGTTGGTTCAGCACTTGATTTTTTTCTTTTATCAACAACTTACCTATGTGAGTGTTGACAGAGCCTAAGAT ATAAATCATTTCTATTATAAAAATAAACAGAATTGCTAACTGTCTACTGAAAAAA]
[+] EMBL BI803738 [ GATCAGCAAGCGCAACCGCCGCAACGCAGTGCC AGACAGC GCGGCGGAAGCGGAGAGGTAC AGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCC ATCATGATGAGAA C ATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG TG AACTGGTTTATTATTTTAAGAA CT C GGCCTGTGTGCATG C AAAAAGAAAAAGC AGATTTGGTAAATGTAATGTACTTTTA CTTTATTTGTTGGTTCAGCACTTGATTTTTTTCTTTTATCAACAACTTACCTATGTGAGTGTTGACAGAGCCTAAGATCATAAATCATTTCTATTATAAAAAAAAAa ]
[+] EMBL BI804532 [ AGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCAATCATGATGAGAA C ATGATGATTGATGAGTAATTCGCATTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATG TG AACTGGTTTATTATTTTAAGAA CT C GGCCTGTGTGCATG C AAAAA ]
consensusID : consensus_12259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence
[GCATTTTTGCTATACTGCTTCAGATC-CATGGGGC--TTGGTTAGGCCTGAGGTTTATCCTCTGATG-CCGCGATGATGTTG-G-CATCGGG-CATGGTTGTGTTCCAGCTTGGGCGCAACGTGTGCACCAA-CCCTGAAGTCAAGATCAGCAAGCGCA-ACCGCCGCAACGC-AGTGCCAGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCATCATGATGAGAACA--TGATGATTGATGAGTAATTCGCA-TTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTTAAGAACTCGGCCTGTGTGCATCAAAAAGAAAAAGC-AG-ATTGGTAAATGTAATGTACTTTTACTTTATTAAAAAAAAAA]
[+] EMBL BI802230 [GCATTTTTGCTATACTGCTTCAGATC CATGGGGC TTGGTTAGGCCTGAGGTTTATCCTCTGATG CCGCGATGATGTTG G CATCGGG CATGGTTGTGTTCCAGCTTGGGCGCAACGTGTGCACCAA CCCTGAAGTCAAGATCAGCAAGCGCA ACCGCCGCAACGC AGTGCCAGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCATCATGATGAGAACA TGATGATTGATGAGTAATTCGCA TTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTTAAGAACTCGGCCTGTGTGCATCAAAAAGAAAAAGC AG ATTGGTAAATGTAATGTACTTTTACTTTATTAAAAAAAAAA]
[+] EMBL BI803052 [ ATCTCATGGGGCCGTTGGTTAGGCCTGAGGTTTATCCTCTGATGCCCGCGATGATGTTGCGCCATCGGGACATGGTTGTGTTCCAGCTTGGGCGCAACGTGTGCACCAAGCCCTGAAGTCAAGATCAGCAAGCGCATACCGCCGCAACGCTAGTGCCAGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCATCATGATGAGAACAACTGATGATTGATGAGTAATTCGCACTTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTTAAGAACTCGGCCTGTGTGCATCAAAAAGAAAAAGCAAGCCTTGGTAAATGTAATGTACTTTTACTTTA AAAAAA ]
consensusID : consensus_12259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GGGTGTGACAGTCTCAATTTTGGCATTTTTGCTATACTGCTTGGCAGATCCATGGGGCTTGGGTTAGGCCTGAGGTCAGTATACAGTCTCCTCTTAATATATTATTCTGCACGATTATTTTGTTGAGATATTGTACTAGTCAAGAGAGGATTCATCATTTTCCCCAAATTGGTTATCCACTTGGCTTTTGTCCCAACTTGGATAATTTTGGTAGATCTAATCCACATAGATCGATGAACTACTTAACTTAGGGTCTTTTGGTACAGCTCCCACTCTGAGACTCTAATCTCTTGAAGCTAGAGTTGTATCAAAACTTTCGAGAACTTGAATAATAAAGAATGGAGCTTTAAAAA]
[+] EMBL BI802251 [GGGTGTGACAGTCTCAATTTTGGCATTTTTGCTATACTGCTTGGCAGATCCATGGGGCTTGGGTTAGGCCTGAGGTCAGTATACAGTCTCCTCTTAATATATTATTCTGCACGATTATTTTGTTGAGATATTGTACTAGTCAAGAGAGGATTCATCATTTTCCCCAAATTGGTTATCCACTTGGCTTTTGTCCCAACTTGGATAATTTTGGTAGATCTAATCCACATAGATCGATGAACTACTTAACTTAGGGTCTTTTGGTACAGCTCCCACTCTGAGACTCTAATCTCTTGAAGCTAGAGTTGTATCAAAACTTTCGAGAACTTGAATAATAAAGAATGGAGCTTTAAAAA]
consensusID : consensus_12259#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence
[TGATGAGAACAATGATTGATGAGTTAATTCCGATTATGTGTTGTTTTTGTTCCTATAAGGACCAGCGTTATGTGNCGTAATATGGTTAGNTGTGAACTGGTTTATTATTTTAAGAACNCGGCCTTTGTGCTTGCAAAAAAGAAAAAGN]
[-] EMBL AA750342 [TGATGAGAACAATGATTGATGAGTTAATTCCGATTATGTGTTGTTTTTGTTCCTATAAGGACCAGCGTTATGTGNCGTAATATGGTTAGNTGTGAACTGGTTTATTATTTTAAGAACNCGGCCTTTGTGCTTGCAAAAAAGAAAAAGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12259#0 TCAATTTTGGCATTTTTGCTATACTGCTTGCAGATCCATGGGGCTTGGGTTAGCCTGAGG 60
consensus_12259#1 ---------GCATTTTTGCTATACTGCTT-CAGATCCATGGGGCTTGGTTAGGCCTGAGG 50
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ------------------------------------------------------------
consensus_12259#0 TTTATCCTCTGATGCCGCGATGATGTTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCG 120
consensus_12259#1 TTTATCCTCTGATGCCGCGATGATGTTGGCATCGGGCATGGTTGTGTTCCAGCTTGGGCG 110
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ------------GGGTGTGACAGTCTCAATTTTGG-CATTTTTGCTATACTGCTTGGCAG 47
consensus_12259#0 CAACGTGTGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTGCC 180
consensus_12259#1 CAACGTGTGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTGCC 170
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ATCCATG-GGGCTTGGGTTAGGCCTGAGGTCAGTATACAGTCTCCTCTTAATATATTATT 106
consensus_12259#0 AGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCG 240
consensus_12259#1 AGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCG 230
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ---CTGCACGATTATTTTGTTGAGATATTGTA--CTAGTCAAGAGAGGATTCATCATT-- 159
consensus_12259#0 GCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCAT 300
consensus_12259#1 GCGTCGCCCAGAGGTGATGCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCAT 290
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ---TTCCCCAAATTGGTTATCCACT-----TGGCTTTTGTCCCAACTTGGATAATTTTGG 211
consensus_12259#0 CATGATGAGAACATGATGATTGATGAGT-AATTCGCATTATGTGGTGTATTTGTTCGCTA 359
consensus_12259#1 CATGATGAGAACATGATGATTGATGAGT-AATTCGCATTATGTGGTGTATTTGTTCGCTA 349
consensus_12259#3 --TGATGAGAACA--ATGATTGATGAGTTAATTCCGATTATGTGTTGTTTTTGTTC-CTA 55
consensus_12259#2 TAGATCTAATCCACATAGATCGATGAAC---TACTTAACTTAGGGTCTTTTGGTAC---- 264
* ** *** ***** * * * * * * * ** ** *
consensus_12259#0 TAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTT-AAG 418
consensus_12259#1 TAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTT-AAG 408
consensus_12259#3 TAAGGACCAGCGTTATGTGNCGTAATATGGTTAGNTGTGAACTGGTTTATTATTTT-AAG 114
consensus_12259#2 --AGCTCCCACTCTGAG-ACTCTAATCTCTTGAAGCTAGAGTTGTATCAAAACTTTCGAG 321
** ** * * * **** * * * ** ** * * * *** **
consensus_12259#0 AACTCGGCCTGTGTGCATGCAAAAAGAAAAAGCAAGATTGGTAAATGTAATGTACTTTTA 478
consensus_12259#1 AACTCGGCCTGTGTGCAT-CAAAAAGAAAAAGCA-GATTGGTAAATGTAATGTACTTTTA 466
consensus_12259#3 AACNCGGCCTTTGTGCTTGCAAAAAAGAAAAAGN-------------------------- 148
consensus_12259#2 AACTTGAATAATAAAGAATGGAGCTTTAAAAA---------------------------- 353
*** * * * ****
consensus_12259#0 CTTTATTTGTTGGTTCAGCACTTGATTTTTTTCTTTTATCAACAACTTACCTATGTGAGT 538
consensus_12259#1 CTTTATTAAAAAAAAAA------------------------------------------- 483
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ------------------------------------------------------------
consensus_12259#0 GTTGACAGAGCCTAAGATATAAATCATTTCTATTATAAAAATAAACAGAATTGCTAACTG 598
consensus_12259#1 ------------------------------------------------------------
consensus_12259#3 ------------------------------------------------------------
consensus_12259#2 ------------------------------------------------------------
consensus_12259#0 TCTACTGAAAAAA 611
consensus_12259#1 -------------
consensus_12259#3 -------------
consensus_12259#2 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||