These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 558 fasta sequence [CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAGGAGGAGGAGGATCA-GCCGG-CGACGGCG-CGGAGGA-GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC-CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG-CCGGCGTCTGAGCCCGCCG-CCGGG--GC-CGGTGGCGCGCCGCGATCGATCATTGC-TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA-TAGAAGA-A-GAATTGAATGAATTCATTTCGAA-CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG-TTGTAGAGTGGATGGAGTTCATG-CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA] [+] EMBL BI797373 [CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCC CGGAGGA CGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGA GGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GC CGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACCTGGAGTATATAATATATACCTCATCATGTGCTATTAA AAAAAA ] [+] EMBL BI795804 [ ctcTTAACAGATGGAAATGA GCGCCTTGCTGTGA C GCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCG CGGAGGA CGGCGTGGC CTGAGCAGGAA GT CGGGAGCTCC GCGGCTGGTGCACCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GC CGGTGGCGC CCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA] [+] EMBL BI799689 [ GTGAGCGCCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCG CGGAGGACGCGGCGTGGCGCTGAGCCGGAAGGTCCGGGAGCTCC GCGGCTGGTGC CCGCCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCGCCCGGCGTCTGAGCCCGCCGCCCGGG GCGCGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA] [+] EMBL OSC628 [ GCGGGAGGAGGAGGAGGATCA GGCGGNCGGCGGCG CGGAGGA GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCAAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGNTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTC ] [+] EMBL BI798883 [ AGGAGGATCAGGCCGG CGACGGCG CGGAGGA GCGGCGTGGCGCTGAGGCGGAA GTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GCGCGGTGGCGCGCCGCGATCGATCATTGCATTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAaaaa ] [+] EMBL BI798156 [ GGCGCCGGAGGA GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGGGCGC CGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTACTAGAAGACACGAATTGAATGAATTCATTTCGAACCAAGACAGCATAAAAGACATTACTATTGAATTGTTTGCTTGTAGAGTGGATGGAGTTCATGCCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATCATATATACCTCATCATGTGCTATTAACTAAAAA ] [+] EMBL BI798423 [ TACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCC CCG CCGGG GCGCGGTGGCGC CCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAaaa ] consensusID : consensus_12263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TCCCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGCCACCCCCCGAACTAACAATTCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGCTCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAGTCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCATTGCATTGCATTGCACACAGAGATGAGAGATATACAAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCAGAACAAGACAAGCATAAAAGACAATTACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA] [+] EMBL BI798775 [TCCCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGCCACCCCCCGAACTAACAATTCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGCTCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAGTCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCATTGCATTGCATTGCACACAGAGATGAGAGATATACAAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCAGAACAAGACAAGCATAAAAGACAATTACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA] consensusID : consensus_12263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGNGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGTCTGAGCCCGCCGCCGGGGGCGGTGGCGCGCCGCGATCGATCATTGCTTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCGAACAAGACAGCATAAAAGACATCACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA] [+] EMBL C99329 [GGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGNGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGTCTGAGCCCGCCGCCGGGGGCGGTGGCGCGCCGCGATCGATCATTGCTTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCGAACAAGACAGCATAAAAGACATCACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA] consensusID : consensus_12263#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CGCCGCCTTCCTTACCGACGCGAGCCTGTGTCCAGCTTCCCCGCCCGGCGCCCGCCCGCCCGGCCGTTCTGAGCCCCGCCCGCCCGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACTTGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGAACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAGAACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGAATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA] [+] EMBL BI799413 [CGCCGCCTTCCTTACCGACGCGAGCCTGTGTCCAGCTTCCCCGCCCGGCGCCCGCCCGCCCGGCCGTTCTGAGCCCCGCCCGCCCGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACTTGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGAACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAGAACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGAATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12263#0 CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAG 60 consensus_12263#2 ------------------------------------------------------------ consensus_12263#1 ------------------------------------------------------------ consensus_12263#3 ------------------------------------------------------------ consensus_12263#0 GAGGAGGAGGATCAGCCGGCGACGGCGCGGAGGAGCGGCGTGGCGCTGAGGCGGAAGGTG 120 consensus_12263#2 ------------------------------------------------------------ consensus_12263#1 ----------------------------------------------------------TC 2 consensus_12263#3 ------------------------------------------------------------ consensus_12263#0 CGGGAGCTCCGGCGGCTGGTGCCCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTC 180 consensus_12263#2 -----------------------------------------GGCGAGGAGCCTGCTCGTC 19 consensus_12263#1 CCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGC-CACC 61 consensus_12263#3 ------------------------------------------------------------ consensus_12263#0 CGCACCGCCGACTACATCGTCCGG--CTCAAGGCGAGGGT--CGAGCTCC-TCAGGGCGC 235 consensus_12263#2 CGCACCGCCGACTACATCGTCCGG--CTCAAGGCGNGGGT--CGAGCTCC-TCAGGGCGC 74 consensus_12263#1 CCCCGAACTAACAAT-TCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGC 120 consensus_12263#3 ---------------------------------------CGCCGCCTTCCTTACCGACGC 21 ** *** * * *** consensus_12263#0 TCTCCGCGCTCTACGACGAGCTTCC--ACTCCCCGCCGGCGCCGC-CGCCGGC------G 286 consensus_12263#2 TCTCCGCGCTCTACGACGAGCTTCC--ACTCCCC-------------GCCGGC------G 113 consensus_12263#1 TCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAG 180 consensus_12263#3 -----GAGC-CTGTGTCCAGCTTCC---CCGCCCGGCGCCCGCCC-GCCCGGCCG----T 67 * ** * * * ***** * * *** ** ** consensus_12263#0 TCTGAGC-----CCGCCGCCGGGGCCG---GTGGC----GCGCCGC-GATC-GATCA--T 330 consensus_12263#2 TCTGAGC-----CCGCCGCCGGGGGCG---GTGGC----GCGCCGC-GATC-GATCA--T 157 consensus_12263#1 TCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCA--T 238 consensus_12263#3 TCTGAGCCCCGCCCGCC--CGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACT 125 ******* ** * **** * ***** ** * ** **** **** * consensus_12263#0 TGC-TTGCTT---GCACCGAGATGAGA-GATATACA-GTAGC-TATGTAT-AGAAGAAGA 382 consensus_12263#2 TGC-TTGCTT---GCACCGAGATGAGA-GATATACA-GTAGC-TATGTAT-AGAAGAAGA 209 consensus_12263#1 TGCATTGCATTGCACACAGAGATGAGA-GATATACAAGTAGC-TATGTAT-AGAAGAAGA 295 consensus_12263#3 TGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGA 185 *** **** * * ********* ******* ***** ******* ********* consensus_12263#0 ATT--GAAT--GAATT----CATTTC-GAAC----AAGACA-----------GCATAAAA 418 consensus_12263#2 ATT--GAAT--GAATT----CATTTC-GAAC----AAGACA-----------GCATAAAA 245 consensus_12263#1 ATT--GAAT--GAATT----CATTTCAGAAC----AAGACAA----------GCATAAAA 333 consensus_12263#3 ACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAG 245 * * *** ***** * **** **** * **** ***** consensus_12263#0 GACA-----TTAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 452 consensus_12263#2 GACA-----TCAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 279 consensus_12263#1 GACAA----TTAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 368 consensus_12263#3 AACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGA 305 ** * ** ***** * ******* * * *** consensus_12263#0 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 506 consensus_12263#2 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTT 337 consensus_12263#1 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 422 consensus_12263#3 ATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 361 ************************************* ***************** consensus_12263#0 ACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA- 558 consensus_12263#2 ACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA 390 consensus_12263#1 ACATGGAGTATATAATAAAAA-------------------------------- 443 consensus_12263#3 ACATGGAGTATATAATAAAAA-------------------------------- 382 ***************** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||