cluster # 12267

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Oryza sativa
cluster # 12267 cluster # 12267 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12267#0 length = 1475 sequences # 7

consensus_12267#1 length = 1442 sequences # 2
consensus_12267#2 length = 401 sequences # 1

consensusID : consensus_12267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1475
fasta sequence

                              [CGAACCCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGG-AGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAAGTTTATAAGCAAAAAAAAAAA]

[+] EMBL AK105812             [CGAACTCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGG AGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAA                     ]
[+] EMBL CB643503             [CGAACCCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB643093             [CGAACCCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB643504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGG AGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATGGATCGGTGGATGCAATAAGTTTATAAGCAAAAAAAAAAA]
[-] EMBL CB657814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGG AGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAAG                    ]
[+] EMBL CF196102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACCATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGG AGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTNNNNCATTCAGTACACTGGCTCTAGCTGCACNNGCATTTGTGTGCTCNNNNTCCNNNNNNNNACATGATTATGTTGnnnnntga                                     ]
[-] EMBL AU225509             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACAGTGTCACCGCACTCTTGAACAGCCACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAAGTTTAgcggc           ]




>consensus_12267#0
CGAACCCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTT
CCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCG
CCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGA
GCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGA
GGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGA
GGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCA
GGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCG
TCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTT
TCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGG
AATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGT
TGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACAT
ACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCC
TTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACT
CGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCC
ACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTT
TGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTG
AGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGT
GTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGA
AATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTAT
GAGGGAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGA
AGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAG
TGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGC
CGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGC
TGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATC
GGTGGATGCAATAAGTTTATAAGCAAAAAAAAAAA

consensusID : consensus_12267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1442
fasta sequence

                              [ACGAACTCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAA]

[+] EMBL AK069117             [ACGAACTCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCTTCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGTTTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAATAA]
[+] EMBL CB657813             [                                                                          TCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCCGCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGGAGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCGAGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGGAGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTCAGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTCGTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTTTTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTGGAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGGTTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACATACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATCCTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTACTCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACCCACTGANAACAGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_12267#1
ACGAACTCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCT
TCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCC
GCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGG
AGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCG
AGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGG
AGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTC
AGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTC
GTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTT
TTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTG
GAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGG
TTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACA
TACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATC
CTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTAC
TCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACC
CACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGT
TTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTT
GAGATGATTTGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAGTGTCACCGCACTC
TTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTGAAATTCATGGAAC
ATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACA
GAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCA
CTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATAGTGACCTATCTCC
ACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCGCCGGTGATATGAT
CTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATT
TGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGATCGGTGGATGCAAT
AA

consensusID : consensus_12267#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [ACNAGCTCGTGCCGAATTCGGCACGAGTGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACAGANAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCANAAGAANAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCANCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGANCCTGACTCTATCTAGCATTGTNGGTCNTGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCNGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCNTAGAACAACATGATTATGTTGCTCNTTGATCGGTGGATGCNATAAGCTTATNAGCAAAATCTGCTTTTTTTT]

[+] EMBL BE228259             [ACNAGCTCGTGCCGAATTCGGCACGAGTGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACAGANAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCANAAGAANAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCANCATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGANCCTGACTCTATCTAGCATTGTNGGTCNTGCCTCGCCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCNGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGCTCAATCTCCNTAGAACAACATGATTATGTTGCTCNTTGATCGGTGGATGCNATAAGCTTATNAGCAAAATCTGCTTTTTTTT]




>consensus_12267#2
ACNAGCTCGTGCCGAATTCGGCACGAGTGGACTACTGTCTAGTACACTGGAAGATTGTAT
GAGGGAGAGACAGANAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCANAAGA
ANAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCANCATCAAGCCACCATGCGATAG
TGACCTATCTCCACGTTGCTACGANCCTGACTCTATCTAGCATTGTNGGTCNTGCCTCGC
CGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCNGTACACTGGCTCTAGC
TGCACAGGCATTTGTGTGCTCAATCTCCNTAGAACAACATGATTATGTTGCTCNTTGATC
GGTGGATGCNATAAGCTTATNAGCAAAATCTGCTTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12267#0      -CGAACCCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCT 59
consensus_12267#1      ACGAACTCCTTCCAAGCTCCTCGCCAATGGCGTCCTCCTCCGCCCTCGCTTCCTCCCCCT 60
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCC 119
consensus_12267#1      TCCTCCCGCCCCTCTCAACCCCAAACCCTAGGGCCCTCTCCCTCCGCCTCCCCGCTCGCC 120
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      GCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGG 179
consensus_12267#1      GCCTCCCCGTGGCGTCCTCCGCGGCTCCCTCGGGCGCTGCCGCTGCGGCGTCGGCGAGGG 180
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      AGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCG 239
consensus_12267#1      AGCGCCGCCGCTTCCTGGAGCGGTACGGCCTCAACCCCGACGACTTCGAGGACGATGCCG 240
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      AGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGG 299
consensus_12267#1      AGGCGGAACCCAGGGAAGAGAGGAGAAGGGATAGGCGGAACCGGCGGTCGGGTAGAGGGG 300
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      AGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTC 359
consensus_12267#1      AGGCGGAGGATGCTCCGGCGAAGGCGGCGGCTGAGCCTCGGGAGACGCATAAAATGCTTC 360
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      AGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTC 419
consensus_12267#1      AGGTGTTAGGAGGAAAAGTACGCAGAAGAAAATTACTTTCACCAAAAGATAGGAATGTTC 420
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      GTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTT 479
consensus_12267#1      GTCCAATGATGGAAGTTGTACGAGGGGCAGCCTTTGACATTTTACAGTCAGCTGGTGGTT 480
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTG 539
consensus_12267#1      TTCCGGCTTCGCTTAGACCTGGTCGATGGTTAGACTTGTATAGTGGTACTGGATCTGTTG 540
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      GAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGG 599
consensus_12267#1      GAATTGAGGCTATGAGCCGTGGATGTTCAGAGGCACATTTTGTTGAGATGGATCCTTGGG 600
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACA 659
consensus_12267#1      TTGTTTCTGAGGTCCTTAAACCGAATCTGGAGTGTACTGGATTTCTTGATGTTTCGCACA 660
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATC 719
consensus_12267#1      TACATATGATCCGCGTCGAAAACTTCTTGGCCAATGCTGAAAAATCTAGTGGTAAATATC 720
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      CTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTAC 779
consensus_12267#1      CTTCTTTTGATTATATTAGTGTAACACCGCCATATCTTGAGGTAAACTACAGTACACTAC 780
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACC 839
consensus_12267#1      TCGATCAACTTGCAAGGTCACCATTGGTTGGAGAAGATTGCTTCATTCTCGTTGAATACC 840
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      CACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGT 899
consensus_12267#1      CACTGAAAACAGACATGGCCGAATCATGTGGAAGCCTTATAAAAGTAGCTGACAGGAGGT 900
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTT 959
consensus_12267#1      TTGGTAGGACAAACTTGCTAATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTT 960
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      GAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGAAAGGAACGCTGTCTCGACAG 1019
consensus_12267#1      GAGATGATTTGT-------------ATGCTAATTACTGGAAAGGAACGCTGTCTCGACAG 1007
consensus_12267#2      ------------------------------------------------------------
                                                                                   

consensus_12267#0      TGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTG 1079
consensus_12267#1      TGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTG 1067
consensus_12267#2      ----------------------------------------------------------AC 2
                                                                                   

consensus_12267#0      AAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTA 1139
consensus_12267#1      AAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTA 1127
consensus_12267#2      NAGCTCGTGCCGAATTCGGCACGAGTG---GACTACTGTCTAGTACACTGGAAGATTGTA 59
                        *  ** **    ** * *      **   ******************************

consensus_12267#0      TGAGGGAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAG 1199
consensus_12267#1      TGAGGGAGAGACAGAGAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAG 1187
consensus_12267#2      TGAGGGAGAGACAGANAGTACTTCTCTTTCATTATAGTTCACCAATCCACATCCCANAAG 119
                       *************** **************************************** ***

consensus_12267#0      AAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATA 1259
consensus_12267#1      AAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAGCATCAAGCCACCATGCGATA 1247
consensus_12267#2      AANAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCANCATCAAGCCACCATGCGATA 179
                       ** ************************************ ********************

consensus_12267#0      GTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCG 1319
consensus_12267#1      GTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCG 1307
consensus_12267#2      GTGACCTATCTCCACGTTGCTACGANCCTGACTCTATCTAGCATTGTNGGTCNTGCCTCG 239
                       ************************* ********************* **** *******

consensus_12267#0      CCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAG 1379
consensus_12267#1      CCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAG 1367
consensus_12267#2      CCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCNGTACACTGGCTCTAG 299
                       ******************************************** ***************

consensus_12267#0      CTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGAT 1439
consensus_12267#1      CTGCACAGGCATTTGTGTGCTCAATCTCCATAGAACAACATGATTATGTTGCTTATTGAT 1427
consensus_12267#2      CTGCACAGGCATTTGTGTGCTCAATCTCCNTAGAACAACATGATTATGTTGCTCNTTGAT 359
                       ***************************** ***********************  *****

consensus_12267#0      CGGTGGATGCAATAAGTTTATAAGCAAAAAAAAAAA------ 1475
consensus_12267#1      CGGTGGATGCAATAA--------------------------- 1442
consensus_12267#2      CGGTGGATGCNATAAGCTTATNAGCAAAATCTGCTTTTTTTT 401
                       ********** ****