These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 987 fasta sequence [AAAGCTGTTCGTCTCCCCAACCCCAACCGCGACGAACTAGGGCGACGGGCCATCGCCGTCGTCGCCGCCGCCGCCGCAGCTCGCGCTCGCTCTCCTCCTCTGGCGCCGTTCCTCTTTCTCCTGCGTCGCCCCATCGACCTCGACCGCTCAGCGTCTGTTTGTAACTTTCTGTTATGGGTGACTACACCATCCAGATTAGCACCAAGCTAATCGACCAGCTTGCTCGTGATGACGAGAAGATCAAAAAGAAAACCA--GGAAA--CCCAAGCC--TAAGAAG-ACTGTCAAAC-AACA-TC-AA-CAAGAG-CCCCA-GGAC-AAC-TCAAGGGAACT--CCCAGCTTCTG--AACCCAAGGC-TCCTCCTGGCTGGCCACTGCAGCCT-CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG-GATGCGTGATGAACTCATCA-AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCTGATTGGTATCATGAGTGAAAGCGTTATCCATAAAAAATCTATGCTGTTGCCATT] [+] EMBL AK102829 [AAAGCTGTTCGTCTCCCCAACCCCAACCGCGACGAACTAGGGCGACGGGCCATCGCCGTCGTCGCCGCCGCCGCCGCAGCTCGCGCTCGCTCTCCTCCTCTGGCGCCGTTCCTCTTTCTCCTGCGTCGCCCCATCGACCTCGACCGCTCAGCGTCTGTTTGTAACTTTCTGTTATGGGTGACTACACCATCCAGATTAGCACCAAGCTAATCGACCAGCTTGCTCGTGATGACGAGAAGATCAAAAAGAAAACCA GGAAA CCCAAGCC TAAGAAG ACTGTCAAAC AACA TC AA CAAGAG CCCCA GGAC AAC TCAAGGGAACT CCCAGCTTCTG AACCCAAGGC TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAGAATGAAACATGAATGCTGGG ] [+] EMBL AK060306 [ CTGTTCGTCTCCCCAACCCCAACCGCGACGAACTAGGGCGACGGGCCATCGCCGTCGTCGCCGCCGCCGCCGCAGCTCGCGCTCGCTCTCCTCCTCTGGCGCCGTTCCTCTTTCTCCTGCGTCGCCCCATCGACCTCGACCGCTCAGCGTCTGTTTGTAACTTTCTGTTATGGGTGACTACACCATCCAGATTAGCACCAAGCTAATCGACCAGCTTGCTCGTGATGACGAGAAGATCAAAAAGAAAACCA GGAAA CCCAAGCC TAAGAAG ACTGTCAAAC AACA TC AA CAAGAG CCCCA GGAC AAC TCAAGGGAACT CCCAGCTTCTG AACCCAAGGC TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCTGATTGGTATCATGAGTGAAAGCGTTATCCATACATAATCTATGCTGTTGCCATT] [+] EMBL OSS12283A [ TCTCCCCAACCCCAACCGCGACGAACTAGGGCGACGGGCCATCGCCGTCGTCGCCGCCGCCGCCGCAGCTCGCGCTCGCTCTCCTCCTCTGGCGCCGTTCCTCTTTCTCCTGCGTCGCCCCATCGACCTCGACCGCTCAGCGTCTGTTTGTAACTTTCTGTTATGGGTGACTACACCATCCAGATTAGCACCAAGCTAATCGACCAGCTTGCTCGTGATGACGAGAGGNTCAAAAAGGAAACCAGGGGAAA CCCAAGCC TAAGAAG GCNTTTAAACNACCA T AA CNAGg ] [+] EMBL OSS12186A [ CAACCCCAACCGCGACGAACTAGGGCGACGGGCCATCGCCGTCGTCGCCGCCGCCGCCGCAGCTCGCGCTCGCTCTCCTCCTCTGGCGCCGTTCCTCTTTCTCCTGCGTCGCCCCATCGACCTCGACCGATCAGCGTCTGTTTGTAACTTTCTGTTATGGGTGACTACACCATCCAGATTAGCACCAAGCTAATCGACCAGCTTGCTCGTGATGACGAGAAGATCAAAAAGAAAACCA GGAAA CCCAAGNC TAAGAAGAACTGTCAAAC AACA TT AA CAAGAG CCCCAGGGAC AAC TCAAGGGAACT NCCAGCTTNTGGAAANCCAAGGC TTCTac ] [+] EMBL AU083370 [ ccgA GGAAACCCCCAAGCCCTTAAGAAG ACTGTCAAAC AACATTC AACCAAGAGCCCCCA GGACAAACTTCAAGGGAATC CCCAGCTTCTG AACCCNAGGC TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCNGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCaaaaa ] [+] EMBL AU062809 [ AAGCC TAAGAAG ACTGTCAAAC AACA TC AA CAAGAG CCCCA GGAC AAC TCAAGGGAACT CCCAGCTTCTG AACCCAAGGC TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCNCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGNTAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCNACGCC ] [+] EMBL AU062826 [ AAGCC TAANAAG ACTGTCAAAC AACA TC AA CAAGAG CCCCA GGAC AAC TCAAGGGAACT CCCAGCTTCTG AACCCAAGGN TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTNTCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGNTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTTTGGAAGAGAGCGAAAAGGTTCAGGAGANGCTGGATAAGCAGCATGCTGGNGATGCNTGATGAACTCATCATGGNAATCA ] [+] EMBL AU092426 [ G ACTGTCAAAC AACA TCAAA CAAGA CCCCA GGAC AAC TCAAGGGAACTC CCCAGCTTCTG AACCNAAGGC TCCTCCTGGCTGGCCACTGCAGCCT CCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCaaaaa ] [+] EMBL AU096112 [ A CAAGAG CCCCA GGAC ANC TCAAGGGAACTCCCCCAGCTTCTG AACCCAAGGCTTCCTCCTGGCTGGCCACTGCAGCCTCCCCATGTATCTCCCCGTAACCCCTGCTCCTCCACCACCCCCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACCCCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACNAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCTGATTGGTATCATGAGTGAAAGCGTTATCCATAAAAA ] [+] EMBL AU096149 [ GGAAGAGANCGAAAAGGTTCAGGAGAAGCTGGATAAGCAGCATGCTGG GATGCGTGATGAACTCATCA AGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAANCCCCACGCCATGCNCTGAGGAGAGGTCAAACTNCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAGGCAGTCAAGAGATTTGAAGCATGTGTTCGCNTGGCGAGGCAAAGGGGCAACACNAAAGTTGCTCAGTAGCCCTGGAAGATTTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGACATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTGCAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCTGATTGGTATCATGAGTGAAAGCGTTATCCATAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||