These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1746 fasta sequence [CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCAGAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCCACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTCGGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT-GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA-CAGCATTAGGGCGTTGGGTCGCGTCCTC-GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA-CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTGTTAAA] [+] EMBL C72383 [CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTNGANGCGCGTG ] [+] EMBL AK065654 [ CTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGCTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCAGAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCCACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTCGGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTG ] [+] EMBL OSR17561A [ ACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGNCGCTGCACTACCTGAGCGGGCCGTACGGGGACANGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGANACGCGGANANNGNNGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGNTCCAAGGTCTACGGAT ] [+] EMBL CB652970 [ GACCCTTCAACGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCATACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCTACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCACATTCTGC ] [+] EMBL CF196998 [ CGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGCCATGCCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGANNATCAACTTATGGGNNNNNNNANNNGTATCCNNNNNATGCATATGNNNCATATGTTGGGCnnnnnnat ] [-] EMBL CB681569 [ GAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCTAC AGGGACTAAATAATGGCAG ] [+] EMBL AU184203 [ AGGAAGGCGTGAGAGTTTNGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTNTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAAAAA ] [+] EMBL AU101144 [ gtcCCAAAATCNTAGAGCTAGTCAATTCTTTCAAACGTNGCTGATAGCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTAGCAGCATTAGGGCGTTGGGTCGCGTCCTCGGGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCANCTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTGTTAAA] [+] EMBL AU031790 [ AATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGNATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGNCGTTCCAATCCTNGAAAAAAA ] consensusID : consensus_12270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 123 fasta sequence [GTAAAACTGTTTATATCACTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329560 [GTAAAACTGTTTATATCACTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12270#0 CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTC 60 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 CCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAAT 120 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 ACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGC 180 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 TTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGT 240 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGC 300 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACAC 360 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAG 420 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCAC 480 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGC 540 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCT 600 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 AGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGG 660 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 AGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTA 720 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 CAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATA 780 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 CATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGG 840 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 CGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCC 900 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 AGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCA 960 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCC 1020 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 ACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTC 1080 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAG 1140 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 TCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCA 1200 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 AACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAA 1260 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 ATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCAC 1320 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 TCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATA 1380 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCC 1440 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 TGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTT 1500 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 GCTGATGCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTC 1560 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 ATCTCCAATGCATGTGATTGTGTTGCATTATGTACAGCATTAGGGCGTTGGGTCGCGTCC 1620 consensus_12270#1 ------------------------------------------------------------ consensus_12270#0 TCGGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCACTTTATAT 1680 consensus_12270#1 ----------------------------------GTAAAACTGTTTATATCACTTTATAT 26 ************************** consensus_12270#0 GCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCT 1740 consensus_12270#1 GCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAA 86 ******************************************** ** * consensus_12270#0 GTTAAA------------------------------- 1746 consensus_12270#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 123 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||