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Oryza sativa
cluster # 12274 cluster # 12274       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12274#0 length = 1261 sequences # 5  
consensus_12274#1 length = 813 sequences # 1  
consensus_12274#2 length = 802 sequences # 1  
consensus_12274#3 length = 799 sequences # 3  

consensusID : consensus_12274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1261
fasta sequence
                              [TCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCTTTTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTANATCTGGGAGAGAGCGAGGAGATGGGGA-GGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGTC]

[+] EMBL CF309429             [TCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCTTTTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTANATCTGGGAGAGAGCGAGGAGATGGGGA GGGGGAAGATAGTGATAAGGAGGATATACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCANAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF327296             [TCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACC ACATGAAAACTGTGATAGACCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AY177702             [                                                                                                                                                                                                                                                                                                           GGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATA                                                                                                                                                                                                                            ]
[+] EMBL AY224482             [                                                                                                                                                                                                                                                                                                           GGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCASSCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCA                                                                                                                                                                                                                                                                ]
[-] EMBL CB666401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCCCAGATGCAAATGAAAGTTCCAGCCCTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCCCAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGTC]


>consensus_12274#0 TCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTA ATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTC CTAATCAATCTCCCATATAATTCTTTTTAGCTTGTATGCCTATCATTAGTACTTCTTGTG TTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACG TGCGTGTGTTAATTAGATAGATGTCTTANATCTGGGAGAGAGCGAGGAGATGGGGAGGGG GAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCG TCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGG CCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAAC TGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGA AATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGA AAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGG TTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTT GAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGA ACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCA GGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTT TCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAG AGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTA TGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGC AAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAG ATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGT TTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGT C



consensusID : consensus_12274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence
                              [TGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAAGTAAGCAATCCATCGGATTTATAAGTATATATGTATATTTCCCCTAATTTAATTGTAGTTTCCTTAGTTGTTCTCGGATCTGCTTTGAAGTCTCCTTTTGTTCTTGATTTATTTTTGAAAGAACTCTCCTTGTTCTTTCACTTGATAGGTATATATATCTGGTTCTGGTAATCTTTCATCCTTTTAAGTTTGAGACGTTTTTATCAACAAAATGACCCAAGTATATGTCTGATCAGCTTTTCATCCTTTCAAGTTTTGAGGCATTTTTATCAACACAAAGACCCAAGCTAAGCATATATGTATGCATGGCTATTAGTCATTCTTGTGATCTTTTAGTAAGCTATAGCTACATAGCAATCAATATG]

[+] EMBL CB666400             [TGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAAGTAAGCAATCCATCGGATTTATAAGTATATATGTATATTTCCCCTAATTTAATTGTAGTTTCCTTAGTTGTTCTCGGATCTGCTTTGAAGTCTCCTTTTGTTCTTGATTTATTTTTGAAAGAACTCTCCTTGTTCTTTCACTTGATAGGTATATATATCTGGTTCTGGTAATCTTTCATCCTTTTAAGTTTGAGACGTTTTTATCAACAAAATGACCCAAGTATATGTCTGATCAGCTTTTCATCCTTTCAAGTTTTGAGGCATTTTTATCAACACAAAGACCCAAGCTAAGCATATATGTATGCATGGCTATTAGTCATTCTTGTGATCTTTTAGTAAGCTATAGCTACATAGCAATCAATATG]


>consensus_12274#1 TGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAG TTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTC CCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTT TGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATG TCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAG ACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGG CGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCG GCAGGCTCTATGAGTTCTCCAGCACCAAGTAAGCAATCCATCGGATTTATAAGTATATAT GTATATTTCCCCTAATTTAATTGTAGTTTCCTTAGTTGTTCTCGGATCTGCTTTGAAGTC TCCTTTTGTTCTTGATTTATTTTTGAAAGAACTCTCCTTGTTCTTTCACTTGATAGGTAT ATATATCTGGTTCTGGTAATCTTTCATCCTTTTAAGTTTGAGACGTTTTTATCAACAAAA TGACCCAAGTATATGTCTGATCAGCTTTTCATCCTTTCAAGTTTTGAGGCATTTTTATCA ACACAAAGACCCAAGCTAAGCATATATGTATGCATGGCTATTAGTCATTCTTGTGATCTT TTAGTAAGCTATAGCTACATAGCAATCAATATG



consensusID : consensus_12274#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence
                              [AATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGTAATCATCTAATGATTCTGCAATGGAAATTGATCATACATTAATATAAAATTCATCAAGAAAGTAGTTTATCAACAATTTAAATGCCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAACTTTAGGAATATAATCAGAATATTCACTGTCAGATTTATCAAGAAAGTAGTTTATCAACAATTTAAATGTCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAATTTTAGGAATATAATTAGAATATTCACTGTCAGATTTATTTTAA]

[+] EMBL CB682181             [AATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGTAATCATCTAATGATTCTGCAATGGAAATTGATCATACATTAATATAAAATTCATCAAGAAAGTAGTTTATCAACAATTTAAATGCCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAACTTTAGGAATATAATCAGAATATTCACTGTCAGATTTATCAAGAAAGTAGTTTATCAACAATTTAAATGTCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAATTTTAGGAATATAATTAGAATATTCACTGTCAGATTTATTTTAA]


>consensus_12274#2 AATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTT CTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGC TGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGG GAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTC GAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGA GGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACAT GAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAAC TTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTT GCAAGAAAGCCACAAGTAATCATCTAATGATTCTGCAATGGAAATTGATCATACATTAAT ATAAAATTCATCAAGAAAGTAGTTTATCAACAATTTAAATGCCACATGGAATTGTATAAG AACCACCAAAAGATGCTTAAATACTTGAAGGAAAACTTTAGGAATATAATCAGAATATTC ACTGTCAGATTTATCAAGAAAGTAGTTTATCAACAATTTAAATGTCACATGGAATTGTAT AAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAATTTTAGGAATATAATTAGAATA TTCACTGTCAGATTTATTTTAA



consensusID : consensus_12274#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 799
fasta sequence
                              [TGGCATATAGATTGGGACTTCTTGAACTGCTGAGATTACTCTTTTGCATGGTTGTAGGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCG-AACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGTCTTTGGACTGAAAAGGTTGTAACAATGTTTACCAGGAAGGTGCTTTGGAGGGAAAAAAGAGTTGTCACTATCCCTAAGAAAAAAAAAAAGG]

[-] EMBL CB682182             [TGGCATATAGATTGGGACTTCTTGAACTGCTGAGATTACTCTTTTGCATGGTTGTAGGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCG AACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGTCTTTGGACTGAAAAGGTTGTAACAATGTTTACCAGGAAGGTGCTTTGGAGGGAAAAAAGAGTTGTCACTATCCCTAAGAAAAAAAAAAAGG]
[-] EMBL CF309428             [                                                                                                                      AGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACA      AGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTTTGAAAAaaaaa                                                                                        ]
[-] EMBL CF327295             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGTCGGATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAA                                                                                                      ]


>consensus_12274#3 TGGCATATAGATTGGGACTTCTTGAACTGCTGAGATTACTCTTTTGCATGGTTGTAGGCA ACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAG GCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAAT CGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAG CCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACA GAGAGGTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACA AAATGCTAATATGCCTCCTAGTCTTGAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTG CAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGACTATGCCGTACAAGC TGGACGATAAGTGATCAATTTCAAACAAGCACAAAGCCTTTCAGATGCAAGTAGTATTTT TGTGATAGCTGAGACAATAAAAAAGTGTACAGACTACAGACTGGACAGATTATGTTGTCG GATGCTCATGTAATGACTGTGGTGTAATAAGAAATACGTAGTATAAGTTTGTAACCCTGC TTACTCTCTATTGCTTTCTAGAAAAGCTCAACCAAAACTCTGAAAAGTCTTTGGACTGAA AAGGTTGTAACAATGTTTACCAGGAAGGTGCTTTGGAGGGAAAAAAGAGTTGTCACTATC CCTAAGAAAAAAAAAAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12274#0      TCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTA 60
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      ATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTC 120
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      CTAATCAATCTCCCATATAATTCTTTTTAGCTTGTATGCCTATCATTAGTACTTCTTGTG 180
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      TTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACG 240
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      TGCGTGTGTTAATTAGATAGATGTCTTANATCTGGGAGAGAGCGAGGAGATGGGGAGGGG 300
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      GAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCG 360
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      TCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGG 420
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      CCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAAC 480
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ------------------------------------------------------------
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      TGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGA 540
consensus_12274#3      ------------------------------------------------------------
consensus_12274#1      ---------------------------------------------------------TGT 3
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      AATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAG--GCAGCAACTGCACAACTTGCAA 598
consensus_12274#3      ----------TGGCATATAGATTGGGACTTCTTGAACTGCTGAGATTACTCT-TTTGCAT 49
consensus_12274#1      CTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTT 63
consensus_12274#2      ------------------------------------------------------------
                                                                                   

consensus_12274#0      GAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAA 658
consensus_12274#3      G---GTTGTAGGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAA 106
consensus_12274#1      CCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCC- 122
consensus_12274#2      ----------------------------AATTTCCTAATCAATCTCCCATATAATTCCC- 31
                                                   *  ** **   * *  *   * * *  * *  

consensus_12274#0      GGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTT 718
consensus_12274#3      GGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTT 166
consensus_12274#1      --CTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTT 180
consensus_12274#2      --CTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTT 89
                          ****    ** ** *   ** ***     *  * *     **        *  ****

consensus_12274#0      TTGAAAAGTGAAATCGAGGA--GTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACA 776
consensus_12274#3      TTGAAAAGTGAAATCGAGGA--GTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACA 224
consensus_12274#1      TGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATG 240
consensus_12274#2      TGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATG 149
                       *     ** *  * * ***   ** ** **      *        ** *  **  * *  

consensus_12274#0      TCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGC 836
consensus_12274#3      TCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGC 284
consensus_12274#1      TCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATA-AGGAGGATA 299
consensus_12274#2      TCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATA-AGGAGGATA 208
                       **  *  *    **       * *  ***  *      **  * *   *  *  *  *  

consensus_12274#0      TTCAGGCCTGTGAACAGAGAGGTGCCAC-----AGATGCAAATGAAAGTTCC---AGCAC 888
consensus_12274#3      TTCAGGCCTGTGAACAGAGAGGTGCCAC-----AGATGCAAATGAAAGTTCC---AGCAC 336
consensus_12274#1      GACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAG 359
consensus_12274#2      GACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAG 268
                         **   *   ** ***  ***** *       *   *         * * *   ** * 

consensus_12274#0      TCCATACAGCT-TTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCC 947
consensus_12274#3      TCCATACAGCT-TTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTTGAATTGAGCC 395
consensus_12274#1      GCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACC 419
consensus_12274#2      GCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACC 328
                        * *   **** * * *    * * *   *    *  ****  * *****     *  **

consensus_12274#0      AATCACAGCAAAGAGAAGGGGAGTGC-AGCAAAACAGCTGCTCCAGAACTGGGACTTCAT 1006
consensus_12274#3      AATCACAGCAAAGAGAAGGGGAGTGC-AGCAAAACAGCTGCTCCAGAACTGGGACTTCAT 454
consensus_12274#1      GGCAGGCTCTATGAGTTCTCCAGCACCAA-GTAAGCAATCCATCGGATTTATAAGTATAT 478
consensus_12274#2      GGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAAC 388
                               * * ***      **  * *     *    *      **           * 

consensus_12274#0      CTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAA----TTTCAAACAAGC 1062
consensus_12274#3      CTGCCTTAAGACTATGCCGTACAAGCTGGACGATAAGTGATCAA----TTTCAAACAAGC 510
consensus_12274#1      AT---GTATATTTCCCCTAATTTAATTGTAGTTTCCTTAGTTG----TTCTCGGATCTGC 531
consensus_12274#2      GCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAG 448
                              *                  ** *   *      *       *  *  *     

consensus_12274#0      ACAA-AGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTA 1121
consensus_12274#3      ACAA-AGCCTTTCAGATGCAAGTAGTATTTTTGTGATAGCTGAGACAATAAAAAAGTGTA 569
consensus_12274#1      TTTG-AAGTCTCCTTTTGTTCTTGATTTATTTTTGAAAGAACTCTCCTTGTTCTTTCACT 590
consensus_12274#2      GCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGTAATCATCTAAT 508
                            *    *      *    *       **   * *          *           

consensus_12274#0      CAGACTACAGACTGGACAGATTATG--TTGTCGGATGCTCATGTAATGACTGTGGTGTAA 1179
consensus_12274#3      CAGACTACAGACTGGACAGATTATG--TTGTCGGATGCTCATGTAATGACTGTGGTGTAA 627
consensus_12274#1      TGATAGGTATATATATCTGGTTCTG-GTAATCTTTCATCCTTTTAA-GTTTGAGACGTTT 648
consensus_12274#2      GATTCTGCAATGGAAATTGATCATACATTAATATAAAATTCATCAA-GAAAGTAGTTTAT 567
                               *         * *  *   *                ** *   *     *  

consensus_12274#0      TAA-----GAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTA-TTGCTTTCTAG 1233
consensus_12274#3      TAA-----GAAATACGTAGTATAAGTTTGTAACCCTGCTTACTCTCTA-TTGCTTTCTAG 681
consensus_12274#1      TTATCAACAAAATGACCCAAGTATATGTCTGATCAGCTTTTCATCCT--TTCAAGTTTTG 706
consensus_12274#2      CAACAATTTAAATGCCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTG 627
                         *      ****         *  * * * *              *  **      * *

consensus_12274#0      AAAAGCTCAACCAAAACTCTGAAAAGTC-------------------------------- 1261
consensus_12274#3      AAAAGCTCAACCAAAACTCTGAAAAGTCTTTGGACTGAAAAGGTTGTAACAATGTTTACC 741
consensus_12274#1      AGGCATTTTTATCAACACAAAGACCCAAGCTAAGCATATATGTATGCATGGCTATTAGTC 766
consensus_12274#2      AAGGAAAACTTTAGGAATATAATCAGAATATTCACTGTCAGATTTATCAAGAAAGTAGTT 687
                       *                                                           

consensus_12274#0      ------------------------------------------------------------
consensus_12274#3      AGGAAGGTGCTTTGGAGGGAAAAAAGAGTTG--TCACTATCCCTAAGAAAAAAAAAAAGG 799
consensus_12274#1      ATTCTTGTGATCTTTTAGTAAGCTATAGCTACATAGCAATCAATATG------------- 813
consensus_12274#2      -TATCAACAATTTAAATGTCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATA 746
                                                                                   

consensus_12274#0      --------------------------------------------------------
consensus_12274#3      --------------------------------------------------------
consensus_12274#1      --------------------------------------------------------
consensus_12274#2      CTTGAAGGAAAATTTTAGGAATATAATTAGAATATTCACTGTCAGATTTATTTTAA 802
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)