These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 230 fasta sequence [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF314252 [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316313 [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTTTTAATAAAAAAAAAAAAAAAAAA ] [-] EMBL CF316312 [ CAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTTTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATTTAAGTTTTAATAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF313676 [ CAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATGTTTTACCATCTGATCCCGAAT GAAGAATAAAAAAA ] consensusID : consensus_12276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGGTAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGACAACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF315302 [GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGGTAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGACAACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12276#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 197 fasta sequence [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] [+] EMBL CF302948 [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] [+] EMBL CF315303 [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAG TAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [-] EMBL CF298658 [ CAGGTAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTTTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGA AAGAAATAAAAAAAAATGAAAAAAAAAAAAATAAAAA ] [+] EMBL AU225547 [ gccgctTGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAAcagcgg ] consensusID : consensus_12276#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence [ATGGTAAAATATTGGAGTGCCCTGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGATGTTACCACCTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT] [+] EMBL CA760769 [ATGGTAAAATATTGGAGTGCCCTGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGATGTTACCACCTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12276#0 -------------------------------TCAGGCAGTTAAAGGGAGATGATGAGTGG 29 consensus_12276#2 -------------------------------TCAGGCAGTTAAAGGGAGATGATGAGTGG 29 consensus_12276#1 GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGG 60 consensus_12276#3 --------------------------------------ATGGTAAAATATTGGAGTGCCC 22 * * * * * consensus_12276#0 TAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGAC 89 consensus_12276#2 TAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGAC 89 consensus_12276#1 TAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGAC 120 consensus_12276#3 TGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGAT 82 * * * **** ** * * **** * ** consensus_12276#0 AACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTATAAAAAAAAAAAAAA 149 consensus_12276#2 AACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAA 149 consensus_12276#1 AACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAA 180 consensus_12276#3 GTTACCAC-CTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT------------ 129 * * ** ** * * * * *** * * consensus_12276#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 209 consensus_12276#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG------------ 197 consensus_12276#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 201 consensus_12276#3 ------------------------------------------------------------ consensus_12276#0 AAAAAAAAAAAAAAAAAAAAA 230 consensus_12276#2 --------------------- consensus_12276#1 --------------------- consensus_12276#3 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||