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Oryza sativa
cluster # 12278 cluster # 12278       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12278#0 length = 2461 sequences # 8  
 consensus_12278#1 length = 622 sequences # 1  
consensus_12278#2 length = 191 sequences # 1  
consensusID : consensus_12278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2461
fasta sequence 
                              [CGACCACCATTCGCCGGAACCCTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGGCGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCCGTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCCCCGACGCCTTCTCCCCTTCCCCTCCAGACCCGAAGCGGCGGCAGCTCGCGGCGTCAACCATCGTGCTCGACGACACCCCCACCCCTCCGAAGCGGCGGCCGCCGCCGGTAGCTGCCGACCGGTCCGCCTCCGTGGTGGCAGATACGCCCCGGTCGTTCGTGCCGTGCTCGCTCCGCAACCGCGCCATTGCTGGTGATACGCCCGATTCTGTTCTCCCGAGCCCGTCGTTCCACCTCGACGCTCCCGATTCCGCGACCCCTGGCTCGGATGTCCCGTGCTCCGTCGGGCTTGACGACATTGTTCCTGAGACCCCGGGCTTCAACTCCCCACGCTTGGCTCGTCCCCCGGCCGTGCCTGGCTTGACGTCTCCTATGACCGCGAGGAAATTTTCTGGAGTATCTTGTCCAATATCTCTGGATAGTGATGACGAATTGGATGACACTGTATACAGGGAGTCTTTAACCAGGACGCCAAGCAATATGGCGAAGCCAGAACACGCAATTCAGCCTTGTACTACTTCCTGTACTGATAAAGTTGAGAATACAAAAAGTACGGATAAGAAGGATTATTCAAAATCAAATGTTGGATATCAAACAAACAATTCTGCATGCAAAAATAATGGAACAACCAGCTACAATCAACCCCCTCGTGCTAATTCTCCTTGTGAAGATTCTACCTTGAAGGAGGCTGATCCTTTTATCAATAACCATTGTCCGCAGGAAGAAAATGCCCTACCGATTGAAGAAAGGAAGAAGAAACAACAGGAAGAGAAGAGACTAAAGAAGGAAAAGAAAGCCAGAGAAATCGAAGAAAAAAAACAAAAACGACTGGAAACCAAAAAGCAAAAGGAAGCTATGAAAGCTGAACTAGCAG--AATTGAAGAAGCTGGAGAAAGAAAAAAAGAAGTGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATTGAAAGTGGCTCAGTTGGAGGTCATCTTGTGCAAGGATTTCATGAGAAGGGCCTTTGTTTTCGAGTAACATCTAATTCAATCAAGGGGTCAATTTTATGGAAGATGCAAATTCCTAATGAGTTTACCCAGGACCAAGCTTCAACATCACAAGTGCCATATATTCTCTTTGTGCTTCAAGCTGAGGAATTCTGCGATCTTGTAAGTGGTGGTACATTACTGGATCATGTTCAGAAAGTTCGAAGACAGTATCCAGAATTCACAATTTGCTACGTTACTAATAAACTGATGAGCTTCATAAAAAGACGTGAGCAGAATCAGTACAACAAGACCACATCAAATTCTAATAGTTGGAAGCGTCCACCAGTGGAAGAGGCCTTATGCAAATTAGCGACACACTATGCTAGAGTGCGCTCAAGGCACTGCACAGATGAAGCTGAAGTGACAGAGCATATTGTTGGCTTGACATATAGTCTTGCGAATTGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCATGCTAATGGTTCAAATATTTCTAAAGGTTGCGTTGATAAAGATCGGATTAAGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCTATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGATCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTTGAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGCTCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGATAGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGATTTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTGAAGCCATTACTTGTTATGGCTGGCACTTTAATGTGCTCTCTACCCATCGATAAAAATGAAATTATCGTAAACTGAAGACATGACACAACTTCTGCTAGATATCTGGATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGATAGGTCCCAGCAATTTTGCAACTTTTGTAAAGTTCGTGACTATTGAGAAAGGTTCAAGTAAATAGGTTGGTACTGGAACCTAAAAAACATATTGAACGGCACTGCATTTGTGCGTGTCGGCAGTGTAATGTATGGTAC]

[+] EMBL AK066786             [CGACCACCATTCGCCGGAACCCTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGGCGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCCGTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCCCCGACGCCTTCTCCCCTTCCCCTCCAGACCCGAAGCGGCGGCAGCTCGCGGCGTCAACCATCGTGCTCGACGACACCCCCACCCCTCCGAAGCGGCGGCCGCCGCCGGTAGCTGCCGACCGGTCCGCCTCCGTGGTGGCAGATACGCCCCGGTCGTTCGTGCCGTGCTCGCTCCGCAACCGCGCCATTGCTGGTGATACGCCCGATTCTGTTCTCCCGAGCCCGTCGTTCCACCTCGACGCTCCCGATTCCGCGACCCCTGGCTCGGATGTCCCGTGCTCCGTCGGGCTTGACGACATTGTTCCTGAGACCCCGGGCTTCAACTCCCCACGCTTGGCTCGTCCCCCGGCCGTGCCTGGCTTGACGTCTCCTATGACCGCGAGGAAATTTTCTGGAGTATCTTGTCCAATATCTCTGGATAGTGATGACGAATTGGATGACACTGTATACAGGGAGTCTTTAACCAGGACGCCAAGCAATATGGCGAAGCCAGAACACGCAATTCAGCCTTGTACTACTTCCTGTACTGATAAAGTTGAGAATACAAAAAGTACGGATAAGAAGGATTATTCAAAATCAAATGTTGGATATCAAACAAACAATTCTGCATGCAAAAATAATGGAACAACCAGCTACAATCAACCCCCTCGTGCTAATTCTCCTTGTGAAGATTCTACCTTGAAGGAGGCTGATCCTTTTATCAATAACCATTGTCCGCAGGAAGAAAATGCCCTACCGATTGAAGAAAGGAAGAAGAAACAACAGGAAGAGAAGAGACTAAAGAAGGAAAAGAAAGCCAGAGAAATCGAAGAAAAAAAACAAAAACGACTGGAAACCAAAAAGCAAAAGGAAGCTATGAAAGCTGAACTAGCAG  AATTGAAGAAGCTGGAGAAAGAAAAAAAGAAGTGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATTGAAAGTGGCTCAGTTGGAGGTCATCTTGTGCAAGGATTTCATGAGAAGGGCCTTTGTTTTCGAGTAACATCTAATTCAATCAAGGGGTCAATTTTATGGAAGATGCAAATTCCTAATGAGTTTACCCAGGACCAAGCTTCAACATCACAAGTGCCATATATTCTCTTTGTGCTTCAAGCTGAGGAATTCTGCGATCTTGTAAGTGGTGGTACATTACTGGATCATGTTCAGAAAGTTCGAAGACAGTATCCAGAATTCACAATTTGCTACGTTACTAATAAACTGATGAGCTTCATAAAAAGACGTGAGCAGAATCAGTACAACAAGACCACATCAAATTCTAATAGTTGGAAGCGTCCACCAGTGGAAGAGGCCTTATGCAAATTAGCGACACACTATGCTAGAGTGCGCTCAAGGCACTGCACAGATGAAGCTGAAGTGACAGAGCATATTGTTGGCTTGACATATAGTCTTGCGAATTGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCATGCTAATGGTTCAAATATTTCTAAAGGTTGCGTTGATAAAGATCGGATTAAGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCTATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGATCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTTGAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGCTCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGATAGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGATTTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTGAAGCCATTACTTGTTATGGCTGGCACTTTAATGTGCTCTCTACCCATCGATAAAAATGAAATTATCGTAAACTGAAGACATGACACAACTTCTGCTAGATATCTGGATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGATAGGTCCCAGCAATTTTGCAACTTTTGTAAAGTTCGTGACTATTGAGAAAGGTTCAAGTAAATAGGTTGGTACTGGAACCTAAAAAACATATTGAACGGCACTGCATTTGTGCGTGTCGGCAGTGTAATGTATGGTAC]
[+] EMBL CB641252             [                     CTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGGCGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCCGTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCCCCGACGCCTTCTCCCCTTCCCCTCCAGACCCGAAGCGGCGGCAGCTCGCGGCGTCAACCATCGTGCTCGACGACACCCCCACCCCTCCGAAGCGGCGGCCGCCGCCGGTAGCTGCCGACCGGTCCGCCTCCGTGGTGGCAGATACGCCCCGGTCGTTCGTGCCGTGCTCGCTCCGCAACCGCGCCATTGCTGGTGATACGCCCGATTCTGTTCTCCCGAGCCCGTCGTTCCACCTCGACGCTCCCGATTCCGCGACCCCTGGCTCGGATGTCCCGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB640997             [                     CTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGGCGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCCGTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGGCCCCGATTac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU032279             [                                                                                                                                                                                                                                                                                                                                                          cnGCCGACCGGTCCGCCTCCGTGGTGGCAGATACNCCCCGGTCGTTCGTNCCGTGCTCGCTCCGCAACCGCGCCATTACTGGTGATACNCCCGATTCTGTTCTCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB000485             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCACCTCGACGCTCCCGATTCCGCGACCCCTGGCTCGGATGTCCCGTGCTCCGTCGGGCTTGACGACATTGTTCCTGAGACCCCGGGCTTCAACTCCCCACGCTTGGCTCGTCCCCCGGCCGTGCCTGGCTTGACGTCTCCTATGACCGCGAGGAAATTTTCTGGAGTATCTTGTCCAATATCTCTGGATAGTGATGACGAATTGGATGACACTGTATACAGGGAGTCTTTAACCAGGACGCCAAGCAATATGGCGAAGCCAGAACACGCAATTCAGCCTTGTACTACTTCCTGTACTGATAAAGTTGAGAATACAAAAAGTACAGATAAGAAGGATTATTCAAAATCAAATGTTGGATATCAAACAAACAATTCTGCATGCAAAAATAATGGAACAACCAGCTACAATCAACCCCCTCGTGCTAATTCTCCTTGTGAAGATTCTACCTTGAAGGAGGCTGATCCTTTTATCAATAACCATTGTCCGCAGGAAGAAAATGCCCTACCGATTGAAGAAAGGAAGAAGAAACAACAGGAAGAGAAGAGACTAAAGAAGGAAAAGAAAGCCAGAGAAATCGAAGAAAAAAAACAAAAACGACTGGAAACCAAAAAGCAAAAGGAAGCTATGAAAGCTGAACTAGCAG  AATTGAAGAAGCTGGAGAAAGAAAAAAAGAAGTGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATTGAAAGTGGCTCAGTTGGAGGTCATCTTGTGCAAGGATTTCATGAGAAAGGCCTTTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF331591             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTGAAGGAGTAGAAAATTGAAGAAGCTGGAGAAAGAAAAAAAGAAGTGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATTGAAAGTGGCTCAGTTGGAGGCCATCTTGTGCAAGGATTTCATGAGAAGGGCCTTTGTTTTCGAGTAACATCTAATTCAATCAAGGGGTCAATTTTATGGAAGATGCAAGTTCCTAATGAGTTTACCCAGGACCAAGCTTCAACATCACAAGTGCCATATATTCTCTTTGTGCTTCAAGCTGAGGAATTCTGCGATCTTGTAAGTGGTGGTACATTACTGGATCATGTTCAGAAAGTTCGAAGACAGTATCCAGAATTCACAATTTGCTACGTTACTAATAAACTGATAAGCTTCATAAAAAGACGTGAGCAGAATCAGTACAACAAGACCACATCAAATTCTAATAGTTGGAAGCGTCCACCAGTGGAAGAGGCCTTATGCAAATTAGCGACACACTATGCTAGAGTGCGCTCAAGGCACTGCACAGATGAAGCTGAAGTGACAGAGCATATTGTTGGCTTGACATATAGTCTTGCGAATTGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF331592             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATATTGTTGGCTTGACATATAGTCTTGCGAATTGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCATGCTAATGGTTCAAATATTTCTAAAGGTTGCGTTGATAAAGATCGGATTAAGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCTATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGATCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTTGAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGCTCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGATAGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGATTTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTGAAGCCATTACTTGTTATGGCTGGCACTTTAGTGTGCTCTCTACCCATCGATAAAAATGAAATTATCGTAAAaaaaa                                                                                                                                                                                                                  ]
[+] EMBL BP184567             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCTATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGATCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTTGAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGCTCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGATAGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGATTTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTGAAGCCATTACTTGTTATGGCTGGCACTTTAATGTGCTCTCTACCCATCGATAAAAATGAAATTATCGTAAACTGAAGACATGACACAACTTCTGCTAGATATCTGGATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGATAGGTCCCA                                                                                                                                 ]




>consensus_12278#0
CGACCACCATTCGCCGGAACCCTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGG
CGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCC
GTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACC
CCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCCCCGAC
GCCTTCTCCCCTTCCCCTCCAGACCCGAAGCGGCGGCAGCTCGCGGCGTCAACCATCGTG
CTCGACGACACCCCCACCCCTCCGAAGCGGCGGCCGCCGCCGGTAGCTGCCGACCGGTCC
GCCTCCGTGGTGGCAGATACGCCCCGGTCGTTCGTGCCGTGCTCGCTCCGCAACCGCGCC
ATTGCTGGTGATACGCCCGATTCTGTTCTCCCGAGCCCGTCGTTCCACCTCGACGCTCCC
GATTCCGCGACCCCTGGCTCGGATGTCCCGTGCTCCGTCGGGCTTGACGACATTGTTCCT
GAGACCCCGGGCTTCAACTCCCCACGCTTGGCTCGTCCCCCGGCCGTGCCTGGCTTGACG
TCTCCTATGACCGCGAGGAAATTTTCTGGAGTATCTTGTCCAATATCTCTGGATAGTGAT
GACGAATTGGATGACACTGTATACAGGGAGTCTTTAACCAGGACGCCAAGCAATATGGCG
AAGCCAGAACACGCAATTCAGCCTTGTACTACTTCCTGTACTGATAAAGTTGAGAATACA
AAAAGTACGGATAAGAAGGATTATTCAAAATCAAATGTTGGATATCAAACAAACAATTCT
GCATGCAAAAATAATGGAACAACCAGCTACAATCAACCCCCTCGTGCTAATTCTCCTTGT
GAAGATTCTACCTTGAAGGAGGCTGATCCTTTTATCAATAACCATTGTCCGCAGGAAGAA
AATGCCCTACCGATTGAAGAAAGGAAGAAGAAACAACAGGAAGAGAAGAGACTAAAGAAG
GAAAAGAAAGCCAGAGAAATCGAAGAAAAAAAACAAAAACGACTGGAAACCAAAAAGCAA
AAGGAAGCTATGAAAGCTGAACTAGCAGAATTGAAGAAGCTGGAGAAAGAAAAAAAGAAG
TGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATT
GAAAGTGGCTCAGTTGGAGGTCATCTTGTGCAAGGATTTCATGAGAAGGGCCTTTGTTTT
CGAGTAACATCTAATTCAATCAAGGGGTCAATTTTATGGAAGATGCAAATTCCTAATGAG
TTTACCCAGGACCAAGCTTCAACATCACAAGTGCCATATATTCTCTTTGTGCTTCAAGCT
GAGGAATTCTGCGATCTTGTAAGTGGTGGTACATTACTGGATCATGTTCAGAAAGTTCGA
AGACAGTATCCAGAATTCACAATTTGCTACGTTACTAATAAACTGATGAGCTTCATAAAA
AGACGTGAGCAGAATCAGTACAACAAGACCACATCAAATTCTAATAGTTGGAAGCGTCCA
CCAGTGGAAGAGGCCTTATGCAAATTAGCGACACACTATGCTAGAGTGCGCTCAAGGCAC
TGCACAGATGAAGCTGAAGTGACAGAGCATATTGTTGGCTTGACATATAGTCTTGCGAAT
TGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCATGCTAATGGTTCAAATATTTCT
AAAGGTTGCGTTGATAAAGATCGGATTAAGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCT
ATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGA
TCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTT
GAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGC
TCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGAT
AGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGAT
TTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTG
ATGTTCTTGGTGCTGAAGCCATTACTTGTTATGGCTGGCACTTTAATGTGCTCTCTACCC
ATCGATAAAAATGAAATTATCGTAAACTGAAGACATGACACAACTTCTGCTAGATATCTG
GATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGATAGGTCCCAGCAATTTT
GCAACTTTTGTAAAGTTCGTGACTATTGAGAAAGGTTCAAGTAAATAGGTTGGTACTGGA
ACCTAAAAAACATATTGAACGGCACTGCATTTGTGCGTGTCGGCAGTGTAATGTATGGTA
C

consensusID : consensus_12278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence 
                              [GCTCGTGGAGATCATCGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCAACGACGCCTTGTCCATTTCCCCTTCAGACCCGAATCGGCGGTAGCTCGGGGGGGGGGGCATATTGCTCGACGACACGCCTACCCCTTCGAAGCGGGGGGCGGCGCCCGGTAGCTCCCGACCGGTGCCCCTTCGAGGTGGTAGATTCTCTCCGGGGGTTCATGGGCGACTCCCTTCGGAAACCACGCCATTGGTGGGGGATACGGCCCGATCTGGGGCTTCCGGGGCCCGGGGGGAGCACCGTAGAGCTTCCCGGTTTCCCGGGACCCCGGGGTTCGGGGGTTGCCCTGGCTCCGGGGGGGGTTGAAAAACATTGTGTCCGGAAACCCTTGACTTTTAAATTTCCACACCCTGGGGGGTGGGATCCGGCGCCCGGCAGGGGGTAAGCTGTTTCTATTAGAGGGGGCGGGGGGAGTATTTTGTCGGGGTGTTCTGTGGGACAAGTAAGGGGGTGTGTTGCTGAGTCGACAATGGGTGGTACTATTTATCACCCGGGGGTGTTTTTTCGGCCCGGAGGGGG]

[+] EMBL BE040642             [GCTCGTGGAGATCATCGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCAACGACGCCTTGTCCATTTCCCCTTCAGACCCGAATCGGCGGTAGCTCGGGGGGGGGGGCATATTGCTCGACGACACGCCTACCCCTTCGAAGCGGGGGGCGGCGCCCGGTAGCTCCCGACCGGTGCCCCTTCGAGGTGGTAGATTCTCTCCGGGGGTTCATGGGCGACTCCCTTCGGAAACCACGCCATTGGTGGGGGATACGGCCCGATCTGGGGCTTCCGGGGCCCGGGGGGAGCACCGTAGAGCTTCCCGGTTTCCCGGGACCCCGGGGTTCGGGGGTTGCCCTGGCTCCGGGGGGGGTTGAAAAACATTGTGTCCGGAAACCCTTGACTTTTAAATTTCCACACCCTGGGGGGTGGGATCCGGCGCCCGGCAGGGGGTAAGCTGTTTCTATTAGAGGGGGCGGGGGGAGTATTTTGTCGGGGTGTTCTGTGGGACAAGTAAGGGGGTGTGTTGCTGAGTCGACAATGGGTGGTACTATTTATCACCCGGGGGTGTTTTTTCGGCCCGGAGGGGG]




>consensus_12278#1
GCTCGTGGAGATCATCGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCT
CCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCAACGACGCCTTGTCCAT
TTCCCCTTCAGACCCGAATCGGCGGTAGCTCGGGGGGGGGGGCATATTGCTCGACGACAC
GCCTACCCCTTCGAAGCGGGGGGCGGCGCCCGGTAGCTCCCGACCGGTGCCCCTTCGAGG
TGGTAGATTCTCTCCGGGGGTTCATGGGCGACTCCCTTCGGAAACCACGCCATTGGTGGG
GGATACGGCCCGATCTGGGGCTTCCGGGGCCCGGGGGGAGCACCGTAGAGCTTCCCGGTT
TCCCGGGACCCCGGGGTTCGGGGGTTGCCCTGGCTCCGGGGGGGGTTGAAAAACATTGTG
TCCGGAAACCCTTGACTTTTAAATTTCCACACCCTGGGGGGTGGGATCCGGCGCCCGGCA
GGGGGTAAGCTGTTTCTATTAGAGGGGGCGGGGGGAGTATTTTGTCGGGGTGTTCTGTGG
GACAAGTAAGGGGGTGTGTTGCTGAGTCGACAATGGGTGGTACTATTTATCACCCGGGGG
TGTTTTTTCGGCCCGGAGGGGG

consensusID : consensus_12278#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence 
                              [TAAATCATGAAAGGTCGATTTTGTATTTNTGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTNAANCCNTTACTTGTTNTGGNTGGCNCTTTAATGTGCTCTCTNCCCATCGATAAAAATGAAATTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU175074             [TAAATCATGAAAGGTCGATTTTGTATTTNTGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTNAANCCNTTACTTGTTNTGGNTGGCNCTTTAATGTGCTCTCTNCCCATCGATAAAAATGAAATTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12278#2
TAAATCATGAAAGGTCGATTTTGTATTTNTGGCCCTTTTGTCCATATTGTTTAGATGAAG
CTTCAAGGTAGTTAATGTGATGTTCTTGGTGCTNAANCCNTTACTTGTTNTGGNTGGCNC
TTTAATGTGCTCTCTNCCCATCGATAAAAATGAAATTTTCGTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12278#0      CGACCACCATTCGCCGGAACCCTAACCCGCCAAAACCCAAAATCAAAATCGCCATCTCGG 60
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      CGAAGAAATCCCCAAATCCACCGGCGAAGCCCCACCAAACCGATGGCGTCCCACGCCGCC 120
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GTCGTCGAGATCATCGACGACGACGACGACGACGACGACGACGTCGCCGCCGCCTCCACC 180
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      CCTCCCGCCCTCCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCCCCGAC 240
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GCCTTCTCCCCTTCCCCTCCAGACCCGAAGCGGCGGCAGCTCGCGGCGTCAACCATCGTG 300
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      CTCGACGACACCCCCACCCCTCCGAAGCGGCGGCCGCCGCCGGTAGCTGCCGACCGGTCC 360
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GCCTCCGTGGTGGCAGATACGCCCCGGTCGTTCGTGCCGTGCTCGCTCCGCAACCGCGCC 420
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      ATTGCTGGTGATACGCCCGATTCTGTTCTCCCGAGCCCGTCGTTCCACCTCGACGCTCCC 480
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GATTCCGCGACCCCTGGCTCGGATGTCCCGTGCTCCGTCGGGCTTGACGACATTGTTCCT 540
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAGACCCCGGGCTTCAACTCCCCACGCTTGGCTCGTCCCCCGGCCGTGCCTGGCTTGACG 600
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TCTCCTATGACCGCGAGGAAATTTTCTGGAGTATCTTGTCCAATATCTCTGGATAGTGAT 660
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GACGAATTGGATGACACTGTATACAGGGAGTCTTTAACCAGGACGCCAAGCAATATGGCG 720
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AAGCCAGAACACGCAATTCAGCCTTGTACTACTTCCTGTACTGATAAAGTTGAGAATACA 780
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AAAAGTACGGATAAGAAGGATTATTCAAAATCAAATGTTGGATATCAAACAAACAATTCT 840
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GCATGCAAAAATAATGGAACAACCAGCTACAATCAACCCCCTCGTGCTAATTCTCCTTGT 900
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAAGATTCTACCTTGAAGGAGGCTGATCCTTTTATCAATAACCATTGTCCGCAGGAAGAA 960
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AATGCCCTACCGATTGAAGAAAGGAAGAAGAAACAACAGGAAGAGAAGAGACTAAAGAAG 1020
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAAAAGAAAGCCAGAGAAATCGAAGAAAAAAAACAAAAACGACTGGAAACCAAAAAGCAA 1080
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AAGGAAGCTATGAAAGCTGAACTAGCAGAATTGAAGAAGCTGGAGAAAGAAAAAAAGAAG 1140
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TGGGAATCAGGGAAGTTAGCTACAAAATGTATTGTTGCTGAGATTGACTCAAGTGTTATT 1200
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAAAGTGGCTCAGTTGGAGGTCATCTTGTGCAAGGATTTCATGAGAAGGGCCTTTGTTTT 1260
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      CGAGTAACATCTAATTCAATCAAGGGGTCAATTTTATGGAAGATGCAAATTCCTAATGAG 1320
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TTTACCCAGGACCAAGCTTCAACATCACAAGTGCCATATATTCTCTTTGTGCTTCAAGCT 1380
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAGGAATTCTGCGATCTTGTAAGTGGTGGTACATTACTGGATCATGTTCAGAAAGTTCGA 1440
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AGACAGTATCCAGAATTCACAATTTGCTACGTTACTAATAAACTGATGAGCTTCATAAAA 1500
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AGACGTGAGCAGAATCAGTACAACAAGACCACATCAAATTCTAATAGTTGGAAGCGTCCA 1560
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      CCAGTGGAAGAGGCCTTATGCAAATTAGCGACACACTATGCTAGAGTGCGCTCAAGGCAC 1620
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TGCACAGATGAAGCTGAAGTGACAGAGCATATTGTTGGCTTGACATATAGTCTTGCGAAT 1680
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TGCAAGTTCAGGAAACCATTGACATGGTTATCTGTGCATGCTAATGGTTCAAATATTTCT 1740
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      AAAGGTTGCGTTGATAAAGATCGGATTAAGAAAAGTGCCTGGCTGAAGTCTTTAGTTGCT 1800
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      ATTCCCGGAGTCAGTCCAGGACAAGCTATTGCAATTGAGAAGAAGTACCCGTCCATGAGA 1860
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TCACTACTGAATGTGTATATGGATGACAGTAAATCTGTTCATGAAAAAGAACATTTGCTT 1920
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      GAAGACTTGAGGTTGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGC 1980
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      ------------------------------------------------------------
                                                                                   

consensus_12278#0      TCTAAAAAAGTGTACACAATTCTCATGGCACAAAATGGAGCGGCAGAAGTGGAAGTTGAT 2040
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      GCTCGTGGAGATCATCGACGACGACGACGACGTCGCCGCCGCCTCCACCCCTCCCGCCCT 60
                                                                                   

consensus_12278#0      AGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAAGGTCGAT 2100
consensus_12278#2      -----------------------------------------TAAATCATGAAAGGTCGAT 19
consensus_12278#1      CCACAAGCGCTCCCATGCGGTCGCCGCCGCCGCCCCCGATTCCAACGACGCCTTGTCCAT 120
                                                                  **  * *    *** **

consensus_12278#0      TTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTG 2160
consensus_12278#2      TTTGTATTTNTGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTG 79
consensus_12278#1      TTCCCCTTCAGACCCGAATCGGCGGTA--GCTCGGGGGGGGGGGCATATTGCTCGACGAC 178
                       **    **     **   * * *  **  * *  *  *  *   **   *  *  * *  

consensus_12278#0      ATGTT-----CTT--------GGTGCTGAAGCCATTA-CTTGTTATGGCTGGCACTTTAA 2206
consensus_12278#2      ATGTT-----CTT--------GGTGCTNAANCCNTTA-CTTGTTNTGGNTGGCNCTTTAA 125
consensus_12278#1      ACGCCTACCCCTTCGAAGCGGGGGGCGGCGCCCGGTAGCTCCCGACCGGTGCCCCTTCGA 238
                       * *       ***        ** **     **  ** **       * ** * ***  *

consensus_12278#0      TGTGCT---CTCTACCCATCGATAAAAATGAAATTATCGTAAACTGAAGACATGACACAA 2263
consensus_12278#2      TGTGCT---CTCTNCCCATCGATAAAAATGAAATTTTCGTAAAAAAAAAAAAAAAAAAAA 182
consensus_12278#1      GGTGGTAGATTCTCTCCGGGGGTTCATGGGCGACTCCCTTCGGAAACCACGCCATTGGTG 298
                        *** *    ***  **   * *  *   *  * *  * *                    

consensus_12278#0      CTTCTGCTAGATATCTGGATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGA 2323
consensus_12278#2      AAAAAAAAA--------------------------------------------------- 191
consensus_12278#1      GGGGATACGGCCCGATCTGGGGCTTCCGGGGCCCGGGGGGAGCACCGTAGAGCTTCCCGG 358
                                                                                   

consensus_12278#0      TAGGTCCCAGCAATTTTGCAACTTTTGTAAAGTTCGTGACTATTGAGAAAGGTTCAAGTA 2383
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      TTTCCCGGGACCCCGGGGTTCGGGGGTTGCCCTGGCTCCGGGGGGGGTTGAAAAACATTG 418
                                                                                   

consensus_12278#0      AATAGGTTGGTACTGGAACCTAAAAAACATATTGAACGGCACTGCATTTGTGCGTGTCGG 2443
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      TGTCCGGAAACCCTTGACTTTTAAATTTCCACACCCTGGGGGGTGGGATCCGGCGCCCGG 478
                                                                                   

consensus_12278#0      CAGTGTAATGTATGGTAC------------------------------------------ 2461
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      CAGGGGGTAAGCTGTTTCTATTAGAGGGGGCGGGGGGAGTATTTTGTCGGGGTGTTCTGT 538
                                                                                   

consensus_12278#0      ------------------------------------------------------------
consensus_12278#2      ------------------------------------------------------------
consensus_12278#1      GGGACAAGTAAGGGGGTGTGTTGCTGAGTCGACAATGGGTGGTACTATTTATCACCCGGG 598
                                                                                   

consensus_12278#0      ------------------------
consensus_12278#2      ------------------------
consensus_12278#1      GGTGTTTTTTCGGCCCGGAGGGGG 622


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)