These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCTTGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGATTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGAACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAAAGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCAAACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAACGATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAGCTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAATATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTCACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTAC] [+] EMBL CA754290 [TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCTTGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGATTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGAACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAAAGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCAAACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAACGATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAGCTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAATATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTCACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTAC] consensusID : consensus_1228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [ACCGTCGAACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAAAGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAACACCAAAGGTTGCTAAACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAACGATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAGCATCATCATAAAATCATGAAAAAAAACTTCAAACGAAAACAATGCCTTACAGTTACCGATATTCATTTGTATGAACACAAGGATTGTTTGTTTTTGTTTTGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAAAAAAA] [+] EMBL CA756059 [ACCGTCGAACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAAAGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAACACCAAAGGTTGCTAAACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAACGATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAGCATCATCATAAAATCATGAAAAAAAACTTCAAACGAAAACAATGCCTTACAGTTACCGATATTCATTTGTATGAACACAAGGATTGTTTGTTTTTGTTTTGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1228#0 TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCT 60 consensus_1228#1 ------------------------------------------------------------ consensus_1228#0 TGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGA 120 consensus_1228#1 ------------------------------------------------------------ consensus_1228#0 TTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGA 180 consensus_1228#1 ----------------------------------------------------ACCGTCGA 8 ** ** ** consensus_1228#0 ACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAA 240 consensus_1228#1 ACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAA 68 *************** ** ** ** *** * ** ***** ** ***************** consensus_1228#0 AGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCA 300 consensus_1228#1 AGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAAC-ACCAAAGGTTGCTA 127 *** ** ************************** *********** ***** ** ** * consensus_1228#0 AACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAAC 360 consensus_1228#1 AACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAAC 187 ************* ************** ****** **** ******************* consensus_1228#0 GATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAG 420 consensus_1228#1 GATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAG 247 **** ** ******** *** *********************** ** ********** consensus_1228#0 CTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAA 480 consensus_1228#1 CATCATCATAAAAT-CATGAAAAAAAACTTCAA-----ACGAAAACAATGCCTT-----A 296 * ********* * * * ** * * * * * ** ****** * * consensus_1228#0 TATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTC 540 consensus_1228#1 CAGTTACCGATATTCATTTGTATGAAC-ACAA---------GGATTGTTTGTTTTTGTTT 346 * ***** ** ** * ** *** **** * * * * * consensus_1228#0 ACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTA 600 consensus_1228#1 TGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAA 406 * * ** * * * ** * * * * * * consensus_1228#0 C---- 601 consensus_1228#1 AAAAA 411 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||