These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 3533 fasta sequence [CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGCCCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCGGCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTAGGTAGCGTACGCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTTGAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTTGTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAACACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAGTACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAATCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGTGACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAAGAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGGAGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTGCCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATATGCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAGTCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTTGCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTTATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTAAGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCATCCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGTTAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGGATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATATACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTAGAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTTTACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTCCATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAATAGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTGAAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAAAAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATGTCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCTAGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACTTGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAAGTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATTTGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAAATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTTGATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAAAGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCATTTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTACAAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACTCTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTATTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGCTTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTTGCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT] [+] EMBL AK121032 [CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGCCCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCGGCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTAGGTAGCGTACGCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTTGAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTTGTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAACACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAGTACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAATCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGTGACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAAGAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGGAGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTGCCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATATGCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAGTCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTTGCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTTATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTAAGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCATCCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGTTAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGGATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATATACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTAGAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTTTACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTCCATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAATAGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTGAAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAAAAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATGTCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCTAGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACTTGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAAGTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATTTGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAAATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTTGATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAAAGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCATTTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTACAAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACTCTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTATTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGCTTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTTGCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT] consensusID : consensus_12283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 928 fasta sequence [GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC-GTACCTC-TTCAATAAGGTTGTCAATGTGAC-TTCTGGAGTAAAAGAGGATCGCATGATGA-TAACCGGAATGCATACTGTGTC-TGATATCTTCTGTG-TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA-CATGAGAAGAGCCAGAGGTA-CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA-CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA-CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA-AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAAAAAAATCTCTACAAAAAAAA] [+] EMBL AK109500 [GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCAC TGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTC TGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT ] [+] EMBL C73850 [ TGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTTCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTCTTTCAATAAGGTTGTCAATGTGACTTTCTTGAGTNAAAGAGGATCCGATTATGATTAACCCG ATTCATACTNTGTC TTAAATCTTCTGTGTTTGGTTTC GATCCNTTTTT ] [+] EMBL AU101382 [ ATGGGCCGNCTGTTCGTGATGCACNT GAAAGGAAGGTGTACAGTTGCAAGCACTTGCCACAGGCACCTCGGCCTNTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTC TGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAGAAAAAaa ] [+] EMBL AU095696 [ ATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGCGGTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTCTTGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTC AAGAATCTCTCTACAAAAA ] [-] EMBL CF320038 [ TATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAAAAAAA ] [+] EMBL BQ906453 [ TGAAGCTGCACCATGAGAAGAGCCAGAGGTACCAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACCATGATGCTCATGTTGGGGGAAGCGACNTGGACGACGTATGAAGCANCAACTCGACATGCTCAA CCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTATAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCCCAGAATCTCTCTAAAAAAAAAA] consensusID : consensus_12283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [CCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGG-GCGGCTGTTCGTGATGCACCTGGAAGGGAAGGT-GTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATCCTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATG] [+] EMBL CF320037 [CCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGG GCGGCTGTTCGTGATGCACCTGGAAGGGAAGGT GTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATCCTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATG] [+] EMBL BE230725 [ cgagGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACANDCANAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGAGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTKGTACAGCTGCAAGSACTGCCACACGCACCTCGGCCTBTCCTC ] [+] EMBL CF324523 [ GCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 -----------------------------------------------------CCCCATC 7 consensus_12283#0 CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATC 60 consensus_12283#1 ----------------------GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 38 consensus_12283#2 CCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 67 consensus_12283#0 CCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 120 ************************************** consensus_12283#1 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 98 consensus_12283#2 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 127 consensus_12283#0 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 180 ************************************************************ consensus_12283#1 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 158 consensus_12283#2 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 187 consensus_12283#0 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 240 ************************************************************ consensus_12283#1 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 218 consensus_12283#2 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 247 consensus_12283#0 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 300 ************************************************************ consensus_12283#1 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 278 consensus_12283#2 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 307 consensus_12283#0 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 360 ************************************************************ consensus_12283#1 ACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAG-TCCTTCCATTGCAA 337 consensus_12283#2 ACT-GCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAG-T------------- 352 consensus_12283#0 ACT-GCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGC 419 *** ***************************************** * consensus_12283#1 GCACGGGAAGGCGTACCTCTTCAATAAGGTTGTCAATGTGACTT--CTGGAGTAAAAGAG 395 consensus_12283#2 -------------------------------GTCAATGTGACTT--CTGGAGTAAAAGAG 379 consensus_12283#0 CCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCG 479 ** *** * ** * * * consensus_12283#1 GATCGCATGATGATAACCGGAATG--CATACTGTGTCTGATATCTTCTGTGT-TGGCTGC 452 consensus_12283#2 GATCGCATGATGATAACCGGAATG--CATCCTGTGTCTGATATCTTCTGTGT-TGGCTGC 436 consensus_12283#0 GCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGT 539 * *** * * *** * * ** ** * *** * * * ** * consensus_12283#1 GGATCCATTGTTGG-ATGGAAATATGAAGCTGCACA------TGAGAAGAGCCAGAGGTA 505 consensus_12283#2 GGATCCATTGTTGG-ATGGAAATATGAAGCTGCACA------TGAGAAGAGCCAGAGGTA 489 consensus_12283#0 CCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTT 599 ******* * * ** ** * * ** ** ** * *** * consensus_12283#1 CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGG-TGTCTGGTCCTGATGGCAGCCACT 564 consensus_12283#2 CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACT 549 consensus_12283#0 CCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTA--GGTAGCGTAC 657 * ** * ** * * * * * *** * ** *** consensus_12283#1 ACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTAT--------- 615 consensus_12283#2 ACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTAT--------- 600 consensus_12283#0 GCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTT 717 * * * * ** * ** ** * * ** ** ** * * consensus_12283#1 GAAGCACAACTCGACATGC------TCAAGCCTTATCCATGTAATCCATGTAAATAACCC 669 consensus_12283#2 GAAGCACAACTCGACATGC------TCAAGCCTTATCCATG------------------- 635 consensus_12283#0 GAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTT 777 ** * *** ** ** * * * ** * ** * consensus_12283#1 AAGTGTTTGTTGGTCTTAGTT---------ACCCGGGGATTTGCTTCCATTCAGAGCAAC 720 consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAA 837 consensus_12283#1 CCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTA--TCATCTTCCTTCAGGAGTTC 778 consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAG 897 consensus_12283#1 AGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCC 838 consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAA 957 consensus_12283#1 CCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCT 898 consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGT 1017 consensus_12283#1 GCTTCTCAAAAAAAATCTCTACAAAAAAAA------------------------------ 928 consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAA 1077 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGG 1137 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTG 1197 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATAT 1257 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAG 1317 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTT 1377 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTT 1437 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 ATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTA 1497 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCAT 1557 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGT 1617 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGG 1677 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 ATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATA 1737 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTA 1797 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTT 1857 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTC 1917 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAAT 1977 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTG 2037 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAA 2097 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATG 2157 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCT 2217 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACT 2277 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAA 2337 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATT 2397 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAA 2457 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 ATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTT 2517 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAA 2577 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCAT 2637 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTAC 2697 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACT 2757 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGG 2817 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 ATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGAT 2877 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTA 2937 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCC 2997 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 AGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGC 3057 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTT 3117 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAG 3177 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGC 3237 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATG 3297 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 TAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAA 3357 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 CCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCA 3417 consensus_12283#1 ------------------------------------------------------------ consensus_12283#2 ------------------------------------------------------------ consensus_12283#0 GGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCC 3477 consensus_12283#1 -------------------------------------------------------- consensus_12283#2 -------------------------------------------------------- consensus_12283#0 CCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT 3533 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||