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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 3533 fasta sequence
[CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGCCCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCGGCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTAGGTAGCGTACGCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTTGAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTTGTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAACACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAGTACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAATCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGTGACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAAGAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGGAGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTGCCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATATGCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAGTCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTTGCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTTATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTAAGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCATCCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGTTAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGGATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATATACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTAGAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTTTACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTCCATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAATAGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTGAAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAAAAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATGTCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCTAGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACTTGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAAGTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATTTGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAAATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTTGATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAAAGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCATTTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTACAAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACTCTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTATTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGCTTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTTGCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT]
[+] EMBL AK121032 [CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGCCCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCGGCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTAGGTAGCGTACGCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTTGAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTTGTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAACACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAGTACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAATCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGTGACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAAGAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGGAGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTGCCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATATGCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAGTCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTTGCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTTATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTAAGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCATCCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGTTAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGGATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATATACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTAGAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTTTACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTCCATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAATAGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTGAAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAAAAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATGTCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCTAGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACTTGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAAGTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATTTGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAAATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTTGATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAAAGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCATTTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTACAAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACTCTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTATTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGCTTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTTGCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT]
consensusID : consensus_12283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 928 fasta sequence
[GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC-GTACCTC-TTCAATAAGGTTGTCAATGTGAC-TTCTGGAGTAAAAGAGGATCGCATGATGA-TAACCGGAATGCATACTGTGTC-TGATATCTTCTGTG-TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA-CATGAGAAGAGCCAGAGGTA-CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA-CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA-CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA-AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAAAAAAATCTCTACAAAAAAAA]
[+] EMBL AK109500 [GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCAC TGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTC TGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT ]
[+] EMBL C73850 [ TGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGCACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTTCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTCTTTCAATAAGGTTGTCAATGTGACTTTCTTGAGTNAAAGAGGATCCGATTATGATTAACCCG ATTCATACTNTGTC TTAAATCTTCTGTGTTTGGTTTC GATCCNTTTTT ]
[+] EMBL AU101382 [ ATGGGCCGNCTGTTCGTGATGCACNT GAAAGGAAGGTGTACAGTTGCAAGCACTTGCCACAGGCACCTCGGCCTNTCCTCCGACATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGC GTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTC TGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAGAAAAAaa ]
[+] EMBL AU095696 [ ATCATCTCCAAGTCCTTCCATTGCAAGCACGGGAAGGCGGTACCTC TTCAATAAGGTTGTCAATGTGAC TTCTGGAGTAAAAGAGGATCGCATGATGA TAACCGGAATGCATACTGTGTCTTGATATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTC AAGAATCTCTCTACAAAAA ]
[-] EMBL CF320038 [ TATCTTCTGTG TTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCA CATGAGAAGAGCCAGAGGTA CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACA CATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCA CAACTCGACATGCTCAAGCCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTA AAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCAAAAAAAA ]
[+] EMBL BQ906453 [ TGAAGCTGCACCATGAGAAGAGCCAGAGGTACCAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACCATGATGCTCATGTTGGGGGAAGCGACNTGGACGACGTATGAAGCANCAACTCGACATGCTCAA CCTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAACCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTATAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCTGCTTCTCCCAGAATCTCTCTAAAAAAAAAA]
consensusID : consensus_12283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence
[CCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGG-GCGGCTGTTCGTGATGCACCTGGAAGGGAAGGT-GTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATCCTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATG]
[+] EMBL CF320037 [CCCCATCCCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGG GCGGCTGTTCGTGATGCACCTGGAAGGGAAGGT GTACAGCTGCAAGCACTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGCATGATGATAACCGGAATGCATCCTGTGTCTGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGAAGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATG]
[+] EMBL BE230725 [ cgagGCAGACAAGCCACCCCCTTCCTCGCGTAGACTGCTCCCCCCACANDCANAAGCAATCCTAATCTCGGATTCGAGGCGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGACGGAGGCGATGGGAGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTKGTACAGCTGCAAGSACTGCCACACGCACCTCGGCCTBTCCTC ]
[+] EMBL CF324523 [ GCGATTGGAGTCGGGTGGACACCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 -----------------------------------------------------CCCCATC 7
consensus_12283#0 CCTCCCCCGTCCATTCCCACGCACGCGGCCTCCACCCCCCATATCAACCCAATCCCCATC 60
consensus_12283#1 ----------------------GCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 38
consensus_12283#2 CCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 67
consensus_12283#0 CCCAACCCCAGTTGCTGCTTTTGCTTCGGTCACCCGGTCAGTGCTGCAGACAAGCCACCC 120
**************************************
consensus_12283#1 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 98
consensus_12283#2 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 127
consensus_12283#0 CCTTCCTCGCGTAGACTGCTCCCCCCACAAACAAAAGCAATCCTAATCTCGGATTCGAGG 180
************************************************************
consensus_12283#1 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 158
consensus_12283#2 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 187
consensus_12283#0 CGAACGAGCGGCGGCGAGGGAGGGGGACTAGCGGCGATCGCGATTGGAGTCGGGTGGACA 240
************************************************************
consensus_12283#1 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 218
consensus_12283#2 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 247
consensus_12283#0 CCGATCGCGGCGGCGCTCTGGGGGATCGGGGTGTGGAATCGAGGGGGAGGGAGGAGGAGA 300
************************************************************
consensus_12283#1 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 278
consensus_12283#2 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 307
consensus_12283#0 CGGAGGCGATGGGGCGGCTGTTCGTGATGCACCTGGAAGGGAAGGTGTACAGCTGCAAGC 360
************************************************************
consensus_12283#1 ACTTGCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAG-TCCTTCCATTGCAA 337
consensus_12283#2 ACT-GCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAG-T------------- 352
consensus_12283#0 ACT-GCCACACGCACCTCGGCCTCTCCTCCGACATCATCTCCAAGGTTCGCCTCTTCAGC 419
*** ***************************************** *
consensus_12283#1 GCACGGGAAGGCGTACCTCTTCAATAAGGTTGTCAATGTGACTT--CTGGAGTAAAAGAG 395
consensus_12283#2 -------------------------------GTCAATGTGACTT--CTGGAGTAAAAGAG 379
consensus_12283#0 CCCCTCCTTTCTTCTTCTTCTCGTTGTTGTTGTTGTTGTTGGCTAGCTTTGTTTGATTCG 479
** *** * ** * * *
consensus_12283#1 GATCGCATGATGATAACCGGAATG--CATACTGTGTCTGATATCTTCTGTGT-TGGCTGC 452
consensus_12283#2 GATCGCATGATGATAACCGGAATG--CATCCTGTGTCTGATATCTTCTGTGT-TGGCTGC 436
consensus_12283#0 GCGAGCACGGCGGATGTGGGAGCGATTGTTTCATGGTTGCTGCTTTCCATTTCTTGCAGT 539
* *** * * *** * * ** ** * *** * * * ** *
consensus_12283#1 GGATCCATTGTTGG-ATGGAAATATGAAGCTGCACA------TGAGAAGAGCCAGAGGTA 505
consensus_12283#2 GGATCCATTGTTGG-ATGGAAATATGAAGCTGCACA------TGAGAAGAGCCAGAGGTA 489
consensus_12283#0 CCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTT 599
******* * * ** ** * * ** ** ** * *** *
consensus_12283#1 CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGG-TGTCTGGTCCTGATGGCAGCCACT 564
consensus_12283#2 CAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGGTGTCTGGTCCTGATGGCAGCCACT 549
consensus_12283#0 CCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGTCAAACTTTA--GGTAGCGTAC 657
* ** * ** * * * * * *** * ** ***
consensus_12283#1 ACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTAT--------- 615
consensus_12283#2 ACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTAT--------- 600
consensus_12283#0 GCCGGGAGATATGTGTGGAATTTGGGGGAAAATGGGAAATGCACTGTGCTTTCTTTTCTT 717
* * * * ** * ** ** * * ** ** ** * *
consensus_12283#1 GAAGCACAACTCGACATGC------TCAAGCCTTATCCATGTAATCCATGTAAATAACCC 669
consensus_12283#2 GAAGCACAACTCGACATGC------TCAAGCCTTATCCATG------------------- 635
consensus_12283#0 GAGTCCTGGTTCGTCAGGCCACTAATTATACGTTTTACAAGGCGAGATTGAAAGCGATTT 777
** * *** ** ** * * * ** * ** *
consensus_12283#1 AAGTGTTTGTTGGTCTTAGTT---------ACCCGGGGATTTGCTTCCATTCAGAGCAAC 720
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GTACTGCGGCCACACCTTGTTTGGGTTCAGACGCGGGTAGCCTAGCCAATTCCTTCCTAA 837
consensus_12283#1 CCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTA--TCATCTTCCTTCAGGAGTTC 778
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CACAATGAAAAATTTGAGAATTACGAATCTGTTTTAAGATTTGACTGCCTTCTTTGGTAG 897
consensus_12283#1 AGGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCC 838
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TACAAGTAACTTGAAACCGCTATTAGGATAAGGAAGATGGTAAACCAAGCAGACAGGGAA 957
consensus_12283#1 CCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAATTCT 898
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TCCTCTAAATTGTAATTGCACTGGATTGTGCACAGGAGATCGCTGGGCGTATATTACGGT 1017
consensus_12283#1 GCTTCTCAAAAAAAATCTCTACAAAAAAAA------------------------------ 928
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GACCAATAAATAGGCAATGGCCAAAACAGAAACCCGAATTCTCTTTGGAAAAAAAGTAAA 1077
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GAGTCCAATAGACAAGGATTTGTGATAATTTACTCTCTTGTTATTCTACTCTTTTCGAGG 1137
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGTGGTGGATATGCGCTATGTTAGAGATGCTGGATGGATGGACACAAGACCTATCCCTTG 1197
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CCTGCGCTTTGTTAATAGCTAAAGTTACACCACTTACTTGCATAGAATGACGCTCAATAT 1257
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GCTTGAAATTGATCTCCTATGCAATAATACAACCCCTATTAGAAGAAGTTGCGTTATAAG 1317
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TCAAAGTTTGGCATGTGTGAAGTTGATATCGAACTGCATCCCTTGCAGCTAAAGCTACTT 1377
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GCATACAACACAGTACTAAGAATAATTGTATGTGGAACTTCTGTAGTTATGATTCTATTT 1437
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 ATTAATGAGTAAAGGTATGTGACAACTTCCCTAATTGCTTCACCACCAATCTGATGCCTA 1497
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGTTCATTATTGGAAAAAGGAATGATAGATGGGCACATTATCCACATATGGAAAAAGCAT 1557
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CCATTCCCTTTCCTATTATTGAACTCTTATTCAATATTGAAAACTTGCTTTTCTTGAAGT 1617
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TAGATTTGGACTATTGAACAGCCAGTCAAGATCTCTGGTAATGTACACCAGCTGTCCTGG 1677
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 ATAGACTTTAATAGAAGCTTACTACTAAGAGCAGACTAACCACCACTGTAATTTTCTATA 1737
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TACATGTCTCCATAGACTGCCATTTGTAGTCCAGTACCGGAAGGTACCAGTGTTGCTGTA 1797
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GAATTCAGCTGCAGCAAAATAAATTTGTGGTTCTTTACCATTACAGGAAGATAACAGTTT 1857
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TACGGTGTTATGTAAAGTTCACCATCATTCAGATCAATAAATGTAGTACTCCCTCCGTTC 1917
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CATATTAGAAGTCATTTGACTTTTTCTTAGTTAAAGTTCTTTAGGTTTGACTAAGTTAAT 1977
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGAAAAAATTAGCAATTTTCAACATTGAATATATTTTGATAATATGTTTGTTTTGTATTG 2037
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AAACATGTTAGTACATTTTTCTATAAATTTAGTCAAGCTTAAAGAAGTTTGACTAGGAAA 2097
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AAGTTAAACGACTTATAATATGAAACAAATGGAGTATTTGGTAGCCCTAGCAAATTAATG 2157
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TCCTTGGTTGAAATATATCTCACTATTTGGTACAAATACAAAGTTGCATGATATAACTCT 2217
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGAGCATTCTACGAACCAAAAGTTTTTATAAGAGTAAAATATGCAGCCGGTCCTTAAACT 2277
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TGGATCGGGGTGTCGTACAGATCCATGAAGTTGTAAAATGCACATTTAGGCCCATTCAAA 2337
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GTTCAAAGTATAGATGGTGCAACTCAGGCACTGATATGGTTGTCCACGGTGGTGAGAATT 2397
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TGCATTTAGGCCCCTCTACCACAGTATGCCCCTAAATTGGCTCCCGCTGCTCCCAGTTAA 2457
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 ATCTTTTGGTGCATAACTTATACTATGAATCTCCAGAATACCAGGAAATACATGTTTGTT 2517
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GATTTGTGGGTAGTGGAAGTCGATTTGGGGGCTATTATAGCAAAGGGGTTTAAATGGAAA 2577
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGTCTAGCTACCGTGGAGGTGTGGATAATCACATCAGCATCGAAGCTGCGTCATCTGCAT 2637
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TTTGGACCTTGGGTGATAGATTAAACCAAGATTGGGGATCAATCTAGATGTGCATTTTAC 2697
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AAGTTTACAGACATAGATGATACTCTGGTCCAAGTTTACGGACCGCCCATGTATTATACT 2757
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CTTTTGATTAAGTCATGTTGGTTGTGGGCAGTGTCAATGTGACTTCTGGAGTAAAAGAGG 2817
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 ATCGCATGATGATAACCGGAATGCATACTGTGTCTGATATCTTCTGTGTTGGCTGCGGAT 2877
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CCATTGTTGGATGGAAATATGTAAGATTTGTGATTATTTTATGTTGTCATATATGTTGTA 2937
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TTGCGTAGCATCTAAGTTTTATGGTGCCCCTACTCTAGGAAGCTGCACATGAGAAGAGCC 2997
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 AGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTAATCCTCTTAACCTCATATATTGC 3057
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TTTGCTGTGTTTCAACAAGCTCTACAATTTAACATTAAAGAGTTATGCATCAAGCCGCTT 3117
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GCCCTTGTATTACTCTGGAATTCAAAACCATATCCCCTTTTTTCGCTAAGCAGGTATAAG 3177
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GTGTCTGGTCCTGATGGCAGCCACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGC 3237
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGCCTTATCCATGTAATCCATG 3297
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 TAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAA 3357
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 CCCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCA 3417
consensus_12283#1 ------------------------------------------------------------
consensus_12283#2 ------------------------------------------------------------
consensus_12283#0 GGTTATTATTGGGTGTTACCGTCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCC 3477
consensus_12283#1 --------------------------------------------------------
consensus_12283#2 --------------------------------------------------------
consensus_12283#0 CCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTAATGACTAAATAAAAT 3533
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||