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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 995 fasta sequence
[GAGACAAGGGGGGTGAAAGGAAAGAGAGATTTCGTCCATGTCTTGCTGAAGAGAAATAAGACCTTTGTGACCATGACAGACGTTAGGGGG-AACAAAAAG-ACCGGGG-CAT-CCGCTGG-TTG-TTTGGAGGACAGG-AAAGGG-CGCTCTCGTCTTT-CCAAATAT-GCTGCTGAAGCAACTG-CAGAACATG-TCGGGCG-TGC-TGCCAGGAAGATGGGTTT-AAAATCTGTGGTCATGAAAGTGAAGGGAACTACATTTTTCAACAAGAAGAAGAAAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATCTCCTGTGGTGCTCATCCATGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAACAACG-CCGGGTTTAGGTCTCAGCGAGCTGGAATTGAACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTTTTTAAGCTGCATGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAACTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTATCAGCAATTTCGCCACTT-TTTTGATAAAATTGCAGATAGGAACTGAAACCCCAACCGTTGTATGGTATGTTATGACTTATGAGGAACATATATATGGTTGATTCTCCTTCAATAAATAGCAAAGCCCTCGCCCCTTTTTCTTGAAAAAAATTGCACTTGCCCATTTTTTAGCTTGAGGTACTACTGTACTAGAATTGCAGCATGGCATTGCTGCGCTAGCCCTTTTATGTTTTAGCAGACATATGGTACCTCATGGTGTTTAGATCAGCTGCTTCATGTTATTTTTTAGTGTTGTGCTGGAGGTAGTAGATATGGGTATTCGCTGTCAATAGACTTATTACTTCCACTGAGTTGTCCATTGTGTATGTAGCGGTAAAAGCTGTAAGAAGGGGTGAAATTAGGGAACCACTGAACCC]
[-] EMBL CA762853 [GAGACAAGGGGGGTGAAAGGAAAGAGAGATTTCGTCCATGTCTTGCTGAAGAGAAATAAGACCTTTGTGACCATGACAGACGTTAGGGGG AACAAAAAG ACCGGGG CAT CCGCTGG TTG TTTGGAGGACAGG AAAGGG CGCTCTAGTCTTT CCAAATAT GCTGCTGAAGCAACTG CAGAACATG TCGGGCG TGC TGCCAGGAAGATGGGTTT AAAATCTGTGGTCATGAAAGTGAAGGGAACTACTTTTTTCAACAAGAAGAAGAAACTGATCCTGAGCTTTAGAAAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATTTCCTGTGGTGCTCATCCATGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAACAACG CCGGGTTTAGGTCTCAGCGAGCTGGAATTGACCCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTTTTTAAGCTGCATGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAACTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTATCAGCAAATTCGCCACTT TTTTGATAAAAaaaa ]
[+] EMBL C98411 [ tTTAGGGGGAAACAAAAAGNCCCGGGGCCATCCCGCTGGTTTGTTTTGGAGGACCGGAAAAGGGCCGCTCTCGTCTTTCCCAAATATGGCTGCTGAAGCAACTGCCAGAACATG TCGGGCG TGC TGCCAGGAAGATGGGTTT AAAATCTGTGGTCATGAAAGTGAAGGGAACTACATTTTTCAATAAGAAGAAGAAAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATCTCCTGTGGTGCTCATCCACGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAACAACGCCCGGGTTTAGGTCTCAGCGAGCTGGAATCGAACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTATTTAAGCTGTGTGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAATTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTATCATCAATTTCGCCACTTCTTTTTATCAAATTGCAGATAGGAACTGAAACCCCAACCGTTGTATGGTATGTTATGACTTATGAGGAACATATATATGGTTGATTCTCCTTCAATAAATAGCAAAGCCCTCGCCCCTTTTTCTTGAAAAAAA ]
[+] EMBL AK072987 [ GG AACAAAAAG ACCGGGG CAT CCGCTGG TTG TTTGGAGGACAGG AAAGGG CGCTCTCGTCTTT CCAAATAT GCTGCTGAAGCAACTG CAGAACATG TCGGGCG TGC TGCCAGGAAGATGGGTTT AAAATCTGTGGTCATGAAAGTGAAGGGAACTACATTTTTCAATAAGAAGAAGAAAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATCTCCTGTGGTGCTCATCCACGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAACAACG CCGGGTTTAGGTCTCAGCGAGCTGGAATCGAACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTATTTAAGCTGTGTGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAATTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTATCATCAATTTCGCCACTTCTTTTTATCAAATTGCAGATAGGAACTGAAACCCCAACCGTTGTATGGTATGTTATGACTTATGAGGAACATATATATGGTTGATTCTCCTTCAATAAATAGCAAAGCCCTCGCCCCTTTTTCTTGAAACAGTTTGCACTTGCCCATTTTTTAGCTTGAGGTACTACTGTACTAGAATTGCAGCATGGCATTGCTGCGCTAGCCCTTTTATGTTTTAGCAGACATATGGTACCTCATGGTGTTTAGATCAGCTGCTTCATGTTATTTTTTAGTGTTGTGCTGGAGGTAGTAGATATGGGTATTCGCTGTCAATAGACTTATTACTTCCACTGAGTTGTCCATTGTGTATGTAGCGGTAAAAGCTGTAAGAAGGGGTGAAATTAGGGAACCACTGAACCC]
[+] EMBL CB097010 [ GG AACAAAAAG ACCGGGG CAT CCGCTGG TTG TTTGGAGGACAGG AAAGGG CGCTCTCGTCTTT CCAAATAT GCTGCTGAAGCAACTG CAGAACATG TCGGGCG TGC TGCCAGGAAGATGGGTTT AAAATCTGTGGTCATGAAAGTGAAGGGAACTACATTTTTCAACAAGAAGAAGAGAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATCTCCTGTGGTGCTCATCCATGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAACAACG CCGGGTTTAGGCCTCAGCGAGCTGGAATTGAACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTTTTTAAGCTGCATGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAACTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTATCAGCAATTTCGNCACTT TTTTGATAAAATTGCAGAT ]
[+] EMBL BI796774 [ CATGTTCGGGCGTTTCTTGCCAGGAAGATGGGTTTAAAAATCTGTGGTCATGAAAGTGAAGGGAACTACATTTTTCAACAAGAAGAAGAAAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGACCAATCTCCTGTGGTGCTCATCCATGATGTGACCCAACTTCCACACAACGGATGCCGACTCCCCAAAC ACG CCGGGTTTAGGTCTCAGCGAGCTGGAATTGAACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTTTTTAAGCTGCATGATGTTGGTCTAGTTGACCTAAGACAGATATGTATTGTTTCTCTTGGCTCTGCTACTTGAACTGGTTTTGGCATGACTTATGTTACTCAGTTAGTTAAGTTAaaaa ]
consensusID : consensus_12298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 622 fasta sequence
[TCTCCCCATCCTCCTCCTCCTCCGCCGCCGCCGCCGTCGGGAAGTACACCTGTGCTCTGGTTCCGGCGACACCGCGAGCGAGGAGAGGAGAGGTGGGGGTGAGGGAGTGAGGGTGAGGCCGGGGTTGGGCACCACCAGCAAGCCAGCCAGCCCCCCCGTCCCCTTAGATCCGGGCCGGGCGTTCTCCGGCGATCTCACGGCCATGGCGTCCCGCCGCCTCTTCGCCTCCCTCCTCAGGTCCACCGCGGCGCCGCGCACCCCGTCCACGCCCGGGTGCCTCTTCAACCGCGCCGCCGCCGCCGCCTACTCCTCGTCCGCCCCCTACAACGGCCAGGGTTTTCCACTTCCTCAGTCTGAAACTGCTTCACGTCTGGGTTTGTTCTCCAGTCCCGGCGACACACGCCAACCTTCATACGGAGACCGTCTAATGCAGTCACAACAGCTGAGTCAAGACTACCGTGCTAGGACACAGGCCAATAATGCGCCACGTTTTGGTGACACAATGTCCAGGATAGCTGGTGGCGAGAACTCTTCCTACTTTGGGACCCCATCACGCATCTTTGACGAACACAAACAATCTTTGGTGAAAGGAAAGAGAGATTTTGTCCATGTCTTGCTGAAG]
[+] EMBL AK073780 [TCTCCCCATCCTCCTCCTCCTCCGCCGCCGCCGCCGTCGGGAAGTACACCTGTGCTCTGGTTCCGGCGACACCGCAAGCGAGGAGAGGAGAGGTGGGGGTGAGGGAGTGAGGGTGAGGCCGGGGTTGGGCACCACCAGCAAGCCAGCCAGCCCCCCCGTCCCCTTAGATCCGGGCCGGGCGTTCTCCGGCGATCTCACGGCCATGGCGTCCCGCCGCCTCTTCGCCTCCCTCCTCAGGTCCACCGCGGCGCCGCGCACCCCGTCCACGCCCGGGTGCCTCTTCAACCGCGCCGCCGCCGCCGCCTACTCCTCGTCCGCCCCCTACAACGGCCAGGGTTTTCCACTTCCTCAGTCTGAAACTGCTTCACGTCTGGGTTTGTTCTCCAGTCCCGGCGACACACGCCAACCTTCATACGGAGACCGTCTAATGCAGTCACAACAGCTAAGTCAAGACTACCGTGCTAGGACACAGGCCAATAATGCGCCACGTTTTGGTGACACAATGTCCAGGATAGCTGGTGGCGAGAACTCTTCCTACTTTGGGACCCCATCACGCATCTTTGACGAACACAAACAATCTTTGGTGAAAGGAAAGAGAGATTTTGTCCATGTCTTGCTGAAG]
[+] EMBL AK066831 [TCTCCCCATCCTCCTCCTCCTCCGCCGCCGCCGCCGTCGGGAAGTACACCTGTGCTCTGGTTCCGGCGACACCGCGAGCGAGGAGAGGAGAGGTGGGGGTGAGGGAGTGAGGGTGAGGCCGGGGTTGGGCACCACCAGCAAGCCAGCCAGCCCCCCCGTCCCCTTAGATCCGGGCCGGGCGTTCTCCGGCGATCTCACGGCCATGGCGTCCCGCCGCCTCTTCGCCTCCCTCCTCAGGTCCACCGCGGCGCCGCGCACCCCGTCCACGCCCGGGTGCCTCTTCAACCGCGCCGCCGCCGCCGCCTACTCCTCGTCCGCCCCCTACAACGGCCAGGGTTTTCCACTTCCTTAGTCTGAAACTGCTTCACGTCTGGGTTTGTTCTCCAGTCCCGGCGACACACGCCAACCTTCATACGGAGACCGTCTAATGCAGTCACAACAGCTGAGTCAAGACTACCGTGCTAGGACACAGGCCAATAATGCGCCACGTTTTGGTGACACAATGTCCAGGATAGCTGGTGGCGAGAACTCTTCCTACTTTGGGACCCCATCACGCATCTTTGACGAACACAAACAATCTTTGGTGAAAGGAAAGAGAGATTTTGTCCATGTCTTGCTGAAG]
[+] EMBL C71713 [ AAGTACACCTGTGCTCTGGTTCCGGCGACACCGCGAGCAAGGAGAGGAGAGGTGGGGGTNAGGGAGTAAGGGTNAGGCCGGGGTTGGGCACCACCAGCAAGCCAGCCAGCCCCCCCGTCCCCTTAGATCCGGGCCGGGCGTTCTCCGGCNATCTNACGGCCATGGCGTCCCG CGCCTCTTCGCCTCCNTCCTNAGGTCCACCGCGGCGCCG GCACCCCGTC ]
[+] EMBL C26269 [ TCTGGTTCCGGCGACACCGCGAGCNAGGAGAGGAGAGGTGGGGGTNAGGGAGTNAGGGTGAGGCCGGGGTTGGGCACCACCAGCAAGCCAGCCAGCCCCGCCGTCCCCTTAGATCCGGGCCGGGCGTTCTCCGNCGATCTCACGGCCATGGCGTCCCG CGCCTCTTCGCCTCCCTCCTCAGGTCCACCGAGGCGCCGCGCACCCNGTNCACGCCCGGNTGCCTCTTCAACCGCGCCGTCGCCGCCGCCTACTCCTCGTCCGCCCCCTANAACGGCCAGGGTTTTCCACTTNCTCAGTCTGAAACTGCTTCACGTCTGGNTTTGTTCTCCAGT ]
[+] EMBL CF323364 [ CCGGGCGTTCTCCGGCGATCTCACGGCCATGGCGTCCCGCCGCCTCTTCGCCTCCCTCCTCAGGTCCACCGCGGCGCCGCGCACCCCGTCCACGCCCGGGTGCCTCTTCAACCGCGCCGCCGCCGCCGCCTACTCCTCGTCCGCCCCCTACAACGGCCAGGGTTTTCCACTTCCTCAGTCTGAAACTGCTTCACGTCTGGGTTTGTTCTCCAGTCCCGGCGACACACGCCAACCTTCATACGGAGACCGTCTAATGCAGTCACAACAGCTGAGTCAAGACTACCGTGCTAGGACACAGGCCAATAATGCGCCACGTTTTGGTGACACAATGTCCAGGATAGCTGGTGGCGAGAACTCTTCCTACTTTGGGACCCCATCACGCATCTTTGACGAACACAAACAATCTTTGGTGAAAGGAAAGAGAGATTTTGTCCATGTCTTGCTGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12298#0 GAGACAAGGGGGGTGAAAGGAAAGAGAGATTTCGTCCATGTCTTGCTGAAGAGAAATAAG 60
consensus_12298#1 ------------------------------------------------------------
consensus_12298#0 ACCTTTGTGACCATGACAGACGTTAGGGGGAACAAAAAGACCGGGGCATCCGCTGGTTGT 120
consensus_12298#1 ------------------------------------------------------------
consensus_12298#0 TTGGAGGACAGGAAAGGGCGCTCTCGTCTTTCCAAATATGCTGCTGAAGCAACTGCAGAA 180
consensus_12298#1 ------------------------------------------------------------
consensus_12298#0 CATGTCGGGCGTGCTGCCAGGAAGATGGGTTTAAAATCTGTGGTCATGAAAGTGAAGGGA 240
consensus_12298#1 ------------------------------------------------------------
consensus_12298#0 ACTACATTTTTCAACAAGAAGAAGAAAGTGATCCTGAGCTTTAGAGAAGGCTTTCGGGGT 300
consensus_12298#1 ------------------------------------------------------------
consensus_12298#0 GAAAGAGTAAGGGAGCAATCTCCTGTGGTGCTCATCCATGATGTGACCCA-ACTTCCACA 359
consensus_12298#1 ---TCTCCCCATCCTCCTCCTCCTCCGCCGC-CGCCGCCGTCGGGAAGTACACCTGTGCT 56
* ***** * ** * * * * ** * ** * *
consensus_12298#0 CAACGGATGCCGACTCCCCAAACAACGCCGGGTT---TAGGTCTCAGCGAGCTGGAATTG 416
consensus_12298#1 CTGGTTCCGGCGACACCGCGAGCGAGGAGAGGAGAGGTGGGGGTGAGGGAGTGAGGGTGA 116
* * **** ** * * * * * ** * ** * ** *** * *
consensus_12298#0 AACCTGAGTTGAGAGGAGTCGAAGCATTCAAGGTGATCTGGAAGCTCTTTTTAAGCTGCA 476
consensus_12298#1 GGCCGGGGTTGGGCACCACC--AGCAAGCCAGCCAGCCCCCCCGTCCCCTTAGATCCGGG 174
** * **** * * **** * ** * * * ** * * *
consensus_12298#0 TGATGT-TGGTCTAGTTGACCTAAGACAGATATGTATTGTT-TCTCTTGGCTCTGCTACT 534
consensus_12298#1 CCGGGCGTTCTCCGGCGATCTCACGGCCATGGCGTCCCGCCGCCTCTTCGCCTCCCTCCT 234
* * ** * * * * * ** * ***** ** ** **
consensus_12298#0 TGAACTGGTTTTGGCATGACTTATGTTACTCAG--TTAGTTAAGTTATCAGCAATTTCGC 592
consensus_12298#1 CAGGTCCACCGCGGCGCCGCGCACCCCGTCCACGCCCGGGTGCCTCTTCAACCGCGCCGC 294
*** * * ** * * * *** * ***
consensus_12298#0 CACTTTTTTGATAAAATTGCAGATAGGAACTGAAACCCCAACCGTTGTATGGTATGTTAT 652
consensus_12298#1 CGCCGCC--GCCTACTCCTCGTCCGCCCCCTACAACGGCCAGGGTTTTCCACTTCCTCA- 351
* * * * * ** *** * * *** * * * *
consensus_12298#0 GACTTATGAGGAACATATATATGGTTGATTCTCCTTCAATAAATAGCAAAGCCCTCGCCC 712
consensus_12298#1 -GTCTGAAACTGCTTCACGTCTGG--GTTTGTTCTCCAGTCC-CGGCGACACACGCCAAC 407
* * * * *** * ** * ** ** * ** * * * * *
consensus_12298#0 CTTTTTCTTGAAAAAAATTGCACTTGCC-CATTTTTTAGCTTGAGGTACTACTGTACTAG 771
consensus_12298#1 CTTCATACGGAGACCGTCTAATGCAGTCACAACAGCTGAGTCAAG--ACTACCGTGCTAG 465
*** * ** * * * * ** * * ** ***** ** ****
consensus_12298#0 AATTGCAGCATGGCATTGCTGCGCTAGCCCTTTTATGTTTTAGCAGACATATGGTACCTC 831
consensus_12298#1 GAC----ACAGGCCAATAATGCGCCA---CGTTTTGGTGACACAATGTCCAGGATAGCTG 518
* ** * ** * ***** * * *** ** * * * * ** **
consensus_12298#0 ATGGTGTTTAGATCAGCTGCTTCATGTTATTTTTTAGTGTTGTGCTGGAGGTAGTAGATA 891
consensus_12298#1 GTGGCGAGAACTCTTCCTACTTTGGG--ACCCCATCACGCATCTTTGACGAACACAAACA 576
*** * * ** *** * * * * ** * * * *
consensus_12298#0 TGGGTATTCGCTGTCA--ATAGACTTATTACTTCCACTGAGTTGTCCATTGTGTATGTAG 949
consensus_12298#1 ---ATCTTTGGTGAAAGGAAAGAGAGATTTTGTCCA-TGTCTTGCTGAAG---------- 622
* ** * ** * * *** *** **** ** *** *
consensus_12298#0 CGGTAAAAGCTGTAAGAAGGGGTGAAATTAGGGAACCACTGAACCC 995
consensus_12298#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||