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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1347 fasta sequence
[GCAATTTTGAGTATCTAATGATTCTCAACACTCTTGCTGGACGATCTTACAATGACTTAACTCAATATCCTATATTCCCTTGGATATTGTCTGACTATTCGTCAGAGAAAATTGATTTCAACAAGTCATCCATTTTTTGTGACCTGTCAAAACCCGTTGGTGCCTTGGATGCCAAACGCTTTAAGGTTTTTGAAGAAAGATATCTTAATTTCTGTGATCCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTTTACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA--GG--GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAATCGATAA-CAGTGACTTCTG-TTGTCCC-TAGCTCTAGTAGCTCCTCATCACCTGTATTGTTTGTTAGCTTGTTGGACTCAAACATTGTTGTGATGAACGAAGGACTTGTACTGTCAGTAAAGCTTTGGCTAACTACACAATTGCAGTCTGGTGGAAACTTCACGTTTTCTGGATCACTGGAACCTTTCTTTGGAATTGGCTCTGATGTAATTTCTCCCCGTAAAATTAGCACTTCCCTGGCTGAAAACGTTGATTTTGGAAGACAATGCCTAACAGCAGTTCAAATTCATGGTGATAATTATTTAATTCTGTGTGGTAATTGGGAGAATAGTTTTCAGATCATTTCCCTTGGTGATGGAAGAATTGTGCAGAGCGTCCGGCAGCATAAAGATGTTGTCAGCTGTGTGGCAGTTTCATCAGATGGAAGTGTAATTGCAACCGGAAGTTATGACACAACTGTTATGATCTGGCATGCATTCCGAGGAAATCAGCTGA]
[+] EMBL CF307340 [GCAATTTTGAGTATCTAATGATTCTCAACACTCTTGCTGGACGATCTTACAATGACTTAACTCAATATCCTATATTCCCTTGGATATTGTCTGACTATTCGTCAGAGAAAATTGATTTCAACAAGTCATCCATTTTTTGTGACCTGTCAAAACCCGTTGGTGCCTTGGATGCCAAACGCTTTAAGGTTTTTGAAGAAAGATATCTTAATTTCTGTGATCCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTTTACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAA ]
[+] EMBL CF306290 [ GATGCCAAACGCTTTAAGGTTTTTGAAGAAAGATATCTTAATTTCTGTGATCCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTTTACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGAT ]
[+] EMBL CF323380 [ CCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTTTACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GGNNGTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAAT ]
[+] EMBL CF304847 [ CTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGA ]
[+] EMBL CF303720 [ CTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGAAGGG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAATCGATAA CAGTGACTTCTG TTGTCCC TAGCTCTAGTAGCTCCTC ]
[+] EMBL CF304119 [ CTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAATCGATAA CAGTGACTTCTG TTGTCCC TAGCTCTAGTAGCTCCTCATCACCTGTATTGTTTGTTAGCTTGTTGGACTCAAACATT ]
[+] EMBL CF303255 [ CTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACAC ]
[+] EMBL CB627131 [ CCCTCCATGGGCAAAGGGTTGTCCAGAAGAATTCATTCATATCAACCGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTACTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAATCGATAA CAGTGACTTCTG TTGTCCC TAGCTCTAGTAGCTCCTCATCACCTGTATTGTTTGTTAGCTTGTTGGACTCAAACATTGTTGTGATGAACGAAGGACTTGTACTGTCAGTAAAGCTTTGGCTAACTACACAATTGCAGTCTGGTGGAAACTTCACGTTTTCTGGATCACTGGAACCTTTCTTTGGAATTGGCTCTGATGTAATTTCTCCCCGTAAAATTAGCACTTCCCTGGCTGAAAACGTTGATTTTGGAAGACAATGCCTAACAGCAGTTCAAATTCATGGTGATAATTATTTAATTCTGTGTGGTAATTGGGAGAATAGTTTTCAGATCATTTCCCTTGGTGATGGAAGAATTGTGCAGAGCGTCCGGCAGCATAAAGATGTTGTCAGCTGTGTGGCAGTTTCATCAGATGGAAGTGTAATTGCAACCGGAAGTTATGACACAACTGTTATGATCTGGCATGCATTCCGAGGAAATCAGCTGA]
[+] EMBL AU162157 [ CCGCGAAG TCTTGAAAGTGAATATGTAAGCTCTAATCTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAGGCGGCAAACATATTTTNCTATTTGACATACGA GG GTGCAGTTGATTTGGAAAACATGGATGATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATTCAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTATATTTTGCCCCACAATCGATAACCAGTGACTTCTGNTTGTCCCNTAGCTCTAGTAGCTCCCCATCACCg ]
consensusID : consensus_12301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[GACCAGAGGACGAGACAAGGGGGATCCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTATACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGTAACGAATTGTTTCCACATATGATTGTACTAAGCATCCATGCTCATGTATTAAATCATGATATTTATTAGTTTTTCTTGGGTGAGGAACAGAAAAAAATCCTGTATTGAGCACCGGTATAGTTTTTATTCATAATCTGCTAGCATACAGTTGATCCATAAGAATGGTTTATGTCCCCTTTGAGTTGCATCCTGTGGTCTTCATATAGTTTTGAAATTTTTTGTACTTCAGTTATAAAAATTTTGGTCAGAAATGTGTTCCATTTGCTTCAAATAACATTGTATCATGGTAGATTTTATGCTTAAAAAAAAAAAA]
[-] EMBL CA759135 [GACCAGAGGACGAGACAAGGGGGATCCTGATATACCAAGTTTTTATTATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTTATACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTCAGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTATACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTGTAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGTAACGAATTGTTTCCACATATGATTGTACTAAGCATCCATGCTCATGTATTAAATCATGATATTTATTAGTTTTTCTTGGGTGAGGAACAGAAAAAAATCCTGTATTGAGCACCGGTATAGTTTTTATTCATAATCTGCTAGCATACAGTTGATCCATAAGAATGGTTTATGTCCCCTTTGAGTTGCATCCTGTGGTCTTCATATAGTTTTGAAATTTTTTGTACTTCAGTTATAAAAATTTTGGTCAGAAATGTGTTCCATTTGCTTCAAATAACATTGTATCATGGTAGATTTTATGCTTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12301#0 GCAATTTTGAGTATCTAATGATTCTCAACACTCTTGCTGGACGATCTTACAATGACTTAA 60
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 CTCAATATCCTATATTCCCTTGGATATTGTCTGACTATTCGTCAGAGAAAATTGATTTCA 120
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 ACAAGTCATCCATTTTTTGTGACCTGTCAAAACCCGTTGGTGCCTTGGATGCCAAACGCT 180
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 TTAAGGTTTTTGAAGAAAGATATCTTAATTTCTGTGATCCTGATATACCAAGTTTTTATT 240
consensus_12301#1 -------------GACCAGAGGACGAGACAAGGGGGATCCTGATATACCAAGTTTTTATT 47
*** * * * *************************
consensus_12301#0 ATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTT 300
consensus_12301#1 ATGGATCTCACTACTCTAGCATGGGAATCGTTCTTTATTACCTTCTTAGGCTTGAGCCTT 107
************************************************************
consensus_12301#0 TTACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTC 360
consensus_12301#1 ATACTGCTCTGCACCGCAATCTGCAGGGTGGAAAGTTTGATCACGCAGATCGTCTTTTTC 167
***********************************************************
consensus_12301#0 AGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTA 420
consensus_12301#1 AGAGCATTGAAAGTACATATAGGAACTGCTTATCAAATACAAGTGATGTCAAAGAGCTTA 227
************************************************************
consensus_12301#0 TACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTG 480
consensus_12301#1 TACCTGAGTTCTTTTATATGCCCGAGTTTCTTGAAAATTCAAATTCCTATCACCTTGGTG 287
************************************************************
consensus_12301#0 TAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGGGTTGTC 540
consensus_12301#1 TAAAGCAGGATGGTGAACCTTTAGGCAATGTTGGTCTCCCTCCATGGGCAAAGG----TA 343
****************************************************** *
consensus_12301#0 CAGAAGAATTCATTCATATCAAC-CGCGAAGCTCTTGAAAGTGAATATGTAAGCTCTAAT 599
consensus_12301#1 ACGAATTGTTTCCACATATGATTGTACTAAGCATCCATGCTCATGTAT-TAAATCATGAT 402
*** ** ***** * * **** *** *** * **
consensus_12301#0 CTCCATCACTGGATTGACCTCATATTTGGTTATAAACAGCGCGGCAAGCCTGCTGTTGAG 659
consensus_12301#1 ATTTATTAGT---------TTTTCTTGGGTGAGGAACAGAA-AAAAATCCTG-TATTGAG 451
* ** * * * * ** *** * ***** ** **** * *****
consensus_12301#0 GCGGCAAACATATTTTACTATTTGACATACGAGGGTGCAGTTGATTTGGAAAACATGGAT 719
consensus_12301#1 CACCGGTATAGTTTTTATT-CATAATCTGCTAGCATACAGTTGATCCATAAGA-ATGGTT 509
* * ***** * * * * * ** * ******** ** * **** *
consensus_12301#0 GATATGTTGCAGAAATCTGCTATTGAGGACCAAATTGCAAATTTTGGACAAACACCTATT 779
consensus_12301#1 TATGTCCCCTTTGAGTTGCATCCTGTGGTCTTCATA--TAGTTTTGAAATTTTTTGTACT 567
** * * * * ** ** * ** * ***** * ** *
consensus_12301#0 CAAATTTTCCGGAAGAAACACCCAAGAAGAGGCCCCCCTATACCAATTGCTCACCCACTA 839
consensus_12301#1 TCAGTTATA-AAAATTTTGGTCAGAAATGTGTTCCATTTGCTTCAAATAACATTGTATCA 626
* ** * ** * * * * * ** * *** * * *
consensus_12301#0 TATTTTGCCCCACAATCGATAACAGTGACTTCTGTTGTCCCTAGCTCTAGTAGCTCCTCA 899
consensus_12301#1 TGGTAGATTTTATGCTTAAAAAAAAAAAA------------------------------- 655
* * * * * ** * *
consensus_12301#0 TCACCTGTATTGTTTGTTAGCTTGTTGGACTCAAACATTGTTGTGATGAACGAAGGACTT 959
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 GTACTGTCAGTAAAGCTTTGGCTAACTACACAATTGCAGTCTGGTGGAAACTTCACGTTT 1019
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 TCTGGATCACTGGAACCTTTCTTTGGAATTGGCTCTGATGTAATTTCTCCCCGTAAAATT 1079
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 AGCACTTCCCTGGCTGAAAACGTTGATTTTGGAAGACAATGCCTAACAGCAGTTCAAATT 1139
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 CATGGTGATAATTATTTAATTCTGTGTGGTAATTGGGAGAATAGTTTTCAGATCATTTCC 1199
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 CTTGGTGATGGAAGAATTGTGCAGAGCGTCCGGCAGCATAAAGATGTTGTCAGCTGTGTG 1259
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 GCAGTTTCATCAGATGGAAGTGTAATTGCAACCGGAAGTTATGACACAACTGTTATGATC 1319
consensus_12301#1 ------------------------------------------------------------
consensus_12301#0 TGGCATGCATTCCGAGGAAATCAGCTGA 1347
consensus_12301#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||