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Oryza sativa
cluster # 12306 cluster # 12306       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12306#0 length = 1392 sequences # 3  
consensus_12306#1 length = 872 sequences # 1  
consensus_12306#2 length = 787 sequences # 5  
consensus_12306#3 length = 430 sequences # 1  

consensusID : consensus_12306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1392
fasta sequence
                              [AGCGGTCAACATGCAGAGCCAGAGGGAGAGGCCCCGCGAAGACCGCGTCCACGAAGAAACCCGAGGCGCAGACCACGCCCATCCATCCGTTCCGCACGCGGCGGCGGCGGCGTCGGCGACGGCGACGGAGACGGCGACGCGAACCATGTCCCTCCACGCCGGCGGCGT-CGTCGTCGTCGACGG-GAAGGAGAAGGGGAAGAAGGAGGAGGGGGAGGGGAAGCGGAAGGGGAAGGCCCCAGCTACGGCGGAGGCGGTCCGCGGGCGCGCGCGGCTGCGCGGGGAGCAGCTGCGCCAGCTGCACGAGATCTTCCTCCGGTTCGACCTCGACGGCGACGGGAGCCTCACCAAGCTGGAGCTCGCCGCGCTCCTCCGCTCTCTCGGCCTCCGCCCGGCCGCGGGGGACGAGATCCACGCCCTCATCGCCGCCATCGACGCCGACGGCAACGGCACCGTCGAGTTCGACGAGCTCGCCTCCTCCCTCGCCGACCTCATCCTCGGCCCGTGCCGCCCCTCCGTCGCCGTCGACCAGGCGGAGCTCGCCGAGGCCTTCAGGGCCTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGCGCGCTCCATGGCGCGGATGGGCCACCCCATCTGCTACGCCGAACTCACCGACATGATGCGCGAGGCCGACACCGACGGCGACGGCCTCATCAGCTTCGAGGAGTTCACCGCCATCATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCTTGTGAGCGACATGGACATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATCTAGTGAAAAATCTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTATCAGTATTTGAAACTGGCTGTTTAATATATGCACAAACAAGATGATGAAGTTTGCTTTTGAAGCACTTGAAAGAAAGAACTCAAACACACATCATAGAGGTCCTTGCAGTGCTTGTTTAATTTGCAAGCCTTTCTGAACGAACTTGCATATTCTTCTTCACAAAAAACAGAGTATGGATGATGTACTGAGCCTCAATTGACATAGAGGTCAAAAATCAAAGTTTGAGCTTCTGTTATCAACTTATCATTATTTATTTTTGAGAGGTTCAGCTGTAGTAATTCTTAAAAGTGCAGCAAAAGGATTTTGCTTGCTTAATTTGTGCTTCTGTTT]

[+] EMBL AK064844             [AGCGGTCAACATGCAGAGCCAGAGGGAGAGGCCCCGCGAAGACCGCGTCCACGAAGAAACCCGAGGCGCAGACCACGCCCATCCATCCGTTCCGCACGCGGCGGCGGCGGCGTCGGCGACGGCGACGGAGACGGCGACGCGAACCATGTCCCTCCACGCCGGCGGCGT CGTCGTCGTCGACGG GAAGGAGAAGGGGAAGAAGGAGGAGGGGGAGGGGAAGCGGAAGGGGAAGGCCCCAGCTACGGCGGAGGCGGTCCGCGGGCGCGCGCGGCTGCGCGGGGAGCAGCTGCGCCAGCTGCACGAGATCTTCCTCCGGTTCGACCTCGACGGCGACGGGAGCCTCACCAAGCTGGAGCTCGCCGCGCTCCTCCGCTCTCTCGGCCTCCGCCCGGCCGCGGGGGACGAGATCCACGCCCTCATCGCCGCCATCGACGCCGACGGCAACGGCACCGTCGAGTTCGACGAGCTCGCCTCCTCCCTCGCCGACCTCATCCTCGGCCCGTGCCGCCCCTCCGTCGCCGTCGACCAGGCGGAGCTCGCCGAGGCCTTCAGGGCCTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGCGCGCTCCATGGCGCGGATGGGCCACCCCATCTGCTACGCCGAACTCACCGACATGATGCGCGAGGCCGACACCGACGGCGACGGCCTCATCAGCTTCGAGGAGTTCACCGCCATCATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCTTGTGAGCGACATGGACATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATCTAGTGAAAAATCTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGT                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU070194             [                   CAGAGGGAGAGGCCCCGCGAAGACCGCGTCCACGAAGAAACCCGAGGCGCAGACCACGCCCATCCATCCGTTCCGCACGCGGCGGCGGCGGNGTCGGCGACGGCGACGGAGACGGCGACGCGAACCATGTCCCTCCACGCCGGCGG GTNCGTCGTCGTCGACGGNGAAGGAGAAGGGGAAGAAGGAGGAGGGGGAGGGGAAGCGGAAGGGGAAGGCCCCAGCTACGGCGGAGGCGGTCCGCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF303525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATCTAGTGAAAAATCTCAATTGTTATCCAGGAACAACATAGATGATCTGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTATCAGTATTTGAAACTGGCTGTTTAATATATGCACAAACAAGATGATGAAGTTTGCTTTTGAAGCACTTGAAAGAAAGAACTCAAACACACATCATAGAGGTCCTTGCAGTGCTTGTTTAATTTGCAAGCCTTTCTGAACGAACTTGCATATTCTTCTTCACAAAAAACAGAGTATGGATGATGTACTGAGCCTCAATTGACATAGAGGTCAAAAATCAAAGTTTGAGCTTCTGTTATCAACTTATCATTATTTATTTTTGAGAGGTTCAGCTGTAGTAATTCTTAAAAGTGCAGCAAAAGGATTTTGCTTGCTTAATTTGTGCTTCTGTTT]


>consensus_12306#0 AGCGGTCAACATGCAGAGCCAGAGGGAGAGGCCCCGCGAAGACCGCGTCCACGAAGAAAC CCGAGGCGCAGACCACGCCCATCCATCCGTTCCGCACGCGGCGGCGGCGGCGTCGGCGAC GGCGACGGAGACGGCGACGCGAACCATGTCCCTCCACGCCGGCGGCGTCGTCGTCGTCGA CGGGAAGGAGAAGGGGAAGAAGGAGGAGGGGGAGGGGAAGCGGAAGGGGAAGGCCCCAGC TACGGCGGAGGCGGTCCGCGGGCGCGCGCGGCTGCGCGGGGAGCAGCTGCGCCAGCTGCA CGAGATCTTCCTCCGGTTCGACCTCGACGGCGACGGGAGCCTCACCAAGCTGGAGCTCGC CGCGCTCCTCCGCTCTCTCGGCCTCCGCCCGGCCGCGGGGGACGAGATCCACGCCCTCAT CGCCGCCATCGACGCCGACGGCAACGGCACCGTCGAGTTCGACGAGCTCGCCTCCTCCCT CGCCGACCTCATCCTCGGCCCGTGCCGCCCCTCCGTCGCCGTCGACCAGGCGGAGCTCGC CGAGGCCTTCAGGGCCTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGC GCGCTCCATGGCGCGGATGGGCCACCCCATCTGCTACGCCGAACTCACCGACATGATGCG CGAGGCCGACACCGACGGCGACGGCCTCATCAGCTTCGAGGAGTTCACCGCCATCATGGC CAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCTTGTGAGCGACATGGACATGGATCGA TGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCCTGCATTTGTT CGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGAT TGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATCTAGTGAAAAATCTCAATTG TTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATGAAATAAAAAACC GGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTATCAGTATTTGAAACTGGCT GTTTAATATATGCACAAACAAGATGATGAAGTTTGCTTTTGAAGCACTTGAAAGAAAGAA CTCAAACACACATCATAGAGGTCCTTGCAGTGCTTGTTTAATTTGCAAGCCTTTCTGAAC GAACTTGCATATTCTTCTTCACAAAAAACAGAGTATGGATGATGTACTGAGCCTCAATTG ACATAGAGGTCAAAAATCAAAGTTTGAGCTTCTGTTATCAACTTATCATTATTTATTTTT GAGAGGTTCAGCTGTAGTAATTCTTAAAAGTGCAGCAAAAGGATTTTGCTTGCTTAATTT GTGCTTCTGTTT



consensusID : consensus_12306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 872
fasta sequence
                              [TTCCGATTCCACCGCGCGCGCACGCCATGAGCGAGCCGGCCACCACCACCCCCACCCCCACCCCCGCCGGAGACCACGACGCAGCCGCCACCGCATGCAAGCCTGCGGAGACGACCACGGCCCTGATCACCTGCAGGAGCAGCAGCTGCAGCGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGCCGCTCGGCGACGACCAGCTGGGTGAGCTGCGGGAGATCTTCCGCTCCTTCGACCGCAACGGCGACGGCAGCCTGACGCAGCTGGAGCTCGGGTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTGGACTCCCTCATCCAGCGCGCCGACACCAACTCCAACGGCCTCATCGAGTTCTCCGAGTTCGTCGCCCTCGTCGCGCCCGAGCTCCTCTACGACCGCGCCCCCTACTCCGAGGACCAGATCCGCCGCCTCTTCAACATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGCCCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGTCAAGGAGCTCACCGGCATGATCAAGGAAGCCGACACCGACGGCGACGGCCGCATCAGCTTCCAGGAATTCTCCCGCGCCATCACCGCCGCCGCATTTGACAACATCTTCTCCTGAGAATATAGCATCAGTGGCATTCACATGCATCGATCGCGGCTGTTCATCAGCCGATCGCTTCGTCAGATGTTTGGGGGAGATCAGATCAGATCAGAATTCAGAATCAGATCAGTGGGGTAAATTTAGGTCAGGTGTTCTTCTTCATATGTGATCGAGCTCTTGTGAATAACGAATAAATCTTTGTAAAACAAACAGAAGTAAAACATACGA]

[+] EMBL AK072726             [TTCCGATTCCACCGCGCGCGCACGCCATGAGCGAGCCGGCCACCACCACCCCCACCCCCACCCCCGCCGGAGACCACGACGCAGCCGCCACCGCATGCAAGCCTGCGGAGACGACCACGGCCCTGATCACCTGCAGGAGCAGCAGCTGCAGCGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGCCGCTCGGCGACGACCAGCTGGGTGAGCTGCGGGAGATCTTCCGCTCCTTCGACCGCAACGGCGACGGCAGCCTGACGCAGCTGGAGCTCGGGTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTGGACTCCCTCATCCAGCGCGCCGACACCAACTCCAACGGCCTCATCGAGTTCTCCGAGTTCGTCGCCCTCGTCGCGCCCGAGCTCCTCTACGACCGCGCCCCCTACTCCGAGGACCAGATCCGCCGCCTCTTCAACATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGCCCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGTCAAGGAGCTCACCGGCATGATCAAGGAAGCCGACACCGACGGCGACGGCCGCATCAGCTTCCAGGAATTCTCCCGCGCCATCACCGCCGCCGCATTTGACAACATCTTCTCCTGAGAATATAGCATCAGTGGCATTCACATGCATCGATCGCGGCTGTTCATCAGCCGATCGCTTCGTCAGATGTTTGGGGGAGATCAGATCAGATCAGAATTCAGAATCAGATCAGTGGGGTAAATTTAGGTCAGGTGTTCTTCTTCATATGTGATCGAGCTCTTGTGAATAACGAATAAATCTTTGTAAAACAAACAGAAGTAAAACATACGA]


>consensus_12306#1 TTCCGATTCCACCGCGCGCGCACGCCATGAGCGAGCCGGCCACCACCACCCCCACCCCCA CCCCCGCCGGAGACCACGACGCAGCCGCCACCGCATGCAAGCCTGCGGAGACGACCACGG CCCTGATCACCTGCAGGAGCAGCAGCTGCAGCGCCCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGGAGGAGCCGCTCGGCGACGACCAGCTGGGTGAGCTGCGGGAGATCTTCCGCTCCT TCGACCGCAACGGCGACGGCAGCCTGACGCAGCTGGAGCTCGGGTCCCTCCTCCGCTCCC TCGGCCTCAAGCCCAGCACCGACGAGCTGGACTCCCTCATCCAGCGCGCCGACACCAACT CCAACGGCCTCATCGAGTTCTCCGAGTTCGTCGCCCTCGTCGCGCCCGAGCTCCTCTACG ACCGCGCCCCCTACTCCGAGGACCAGATCCGCCGCCTCTTCAACATCTTCGACCGCGACG GCAACGGCTTCATCACCGCCGCCGAGCTCGCCCACTCCATGGCCAAGCTCGGCCACGCGC TCACCGTCAAGGAGCTCACCGGCATGATCAAGGAAGCCGACACCGACGGCGACGGCCGCA TCAGCTTCCAGGAATTCTCCCGCGCCATCACCGCCGCCGCATTTGACAACATCTTCTCCT GAGAATATAGCATCAGTGGCATTCACATGCATCGATCGCGGCTGTTCATCAGCCGATCGC TTCGTCAGATGTTTGGGGGAGATCAGATCAGATCAGAATTCAGAATCAGATCAGTGGGGT AAATTTAGGTCAGGTGTTCTTCTTCATATGTGATCGAGCTCTTGTGAATAACGAATAAAT CTTTGTAAAACAAACAGAAGTAAAACATACGA



consensusID : consensus_12306#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 787
fasta sequence
                              [ACCGCGAGAGGTCACAGATCCACAAGAGAAAAGAAAACACACGTACATCGAGATATGACAACAATGGCGGCGAGGAGGTCAGAAGCAGCACCGGCTCCGCAGCAGCTGCGGGGGAGCCAGCTGAAGCAGCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGGCGACGGCAGCCTGACGCAGCTGGAGCTGGCGGCGCTGCTGCGGTCGCTGGGGCTGCGCCCCACGGGCGACGAGGTGCACGCGCTGCTCGCCGGGATGGACGCCAACGGCAACGGGTCGGTGGAGTTCGACGAGCTGGCGGCGGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTGGTGGACCAGGCGCAGCTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGATGATGCGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTCGCCTGACCGACCTAACCACGCAACCAACCTTGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACAACGACTAAGTTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATTAATTTCTTCACCATCTTGTTCGTACGTTTCACCATTTGTAAATCTGAAACAAATTTTGATCAAAAAA]

[+] EMBL AK119799             [ACCGCGAGAGGTCACAGATCCACAAGAGAAAAGAAAACACACGTACATCGAGATATGACAACAATGGCGGCGAGGAGGTCAGAAGCAGCACCGGCTCCGCAGCAGCTGCGGGGGAGCCAGCTGAAGCAGCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGGCGACGGCAGCCTGACGCAGCTGGAGCTGGCGGCGCTGCTGCGGTCGCTGGGGCTGCGCCCCACGGGCGACGAGGTGCACGCGCTGCTCGCCGGGATGGACGCCAACGGCAACGGGTCGGTGGAGTTCGACGAGCTGGCGGCGGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTGGTGGACCAGGCGCAGCTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGATGATGCGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTCGCCTGACCGACCTAACCACGCAACCAACCTTGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACAACGACTAAGTTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATTAA                                                                 ]
[+] EMBL AU093617             [             ACAGATCCACAAGAGAAAAGAAAACACACGTACATCGAGATATGACAACAATGGCGGCGAGGAGGTCAGAAGCAGCACCGGCTCCGCAGCAGCTGCGGGGGAGCCAGCTGAAGCAGCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGGCGACGGCAGCCTGACGCAGCTGGAGCTGGCGGCGCTGCTGCGGTCGCTGGGGCTGCGCCCCACGGGCGACGAGGTGCACGCGCTGCTCGCCGGGATGGACGCCAACGGCAACGGGTCGGTGGAGTTCGACGAGCTGGCGGCGGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTGGTGGACCAGGCGCA CTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCG                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C27991               [             ACAGATCCACAAGAGAAAAGAAAACACACGTACATCGAGATATGACAACAATGGCGGCGAGGAGGTCAGAAGNAGCACCGGCTCCGCAGCAGCTGCGGGGGAGCCAGCTGAAGCAGCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGNNGACGGCAGCCTGANGCAGNTGGAGCTNGCGGCGCTGCTGCGGTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU093618             [                                                                                                                                                                                                                                                                                   CGGGTCGGTGGAGTTCGACGAGCTGGCGGCGGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTGGTGGACCAGGCGCAGCTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTCGCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGATGATGCGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTCGCCTGACCGACCTAACCACGCAACCAACCTTGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACAACGACTAAGTTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATTAATTTCTTCACCATCTTGTTCGTACGTTTCACCATTTGTAAATCTGAAACAAATTTTGATCAAAAAA]
[+] EMBL AU092792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGCTCACCTTCGAGGAG TCACGCGGATGATGCGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTCGCCTGACCGACCTAACCACGCAACCAACCTTGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACAACGACTAAGTTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATTAATTTCTTCACCATCTTGTTCGTACGTTTCACCATTTGTAAATCTGAAACAAATTTTGATCAAAAAA]


>consensus_12306#2 ACCGCGAGAGGTCACAGATCCACAAGAGAAAAGAAAACACACGTACATCGAGATATGACA ACAATGGCGGCGAGGAGGTCAGAAGCAGCACCGGCTCCGCAGCAGCTGCGGGGGAGCCAG CTGAAGCAGCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGGCGACGGCAGCCTGACG CAGCTGGAGCTGGCGGCGCTGCTGCGGTCGCTGGGGCTGCGCCCCACGGGCGACGAGGTG CACGCGCTGCTCGCCGGGATGGACGCCAACGGCAACGGGTCGGTGGAGTTCGACGAGCTG GCGGCGGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTGGTGGACCAGGCGCAGCTG CTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGAGCTC GCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGATGATG CGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATG GCCAAGTCCGCGCTTGACTTCCTCGGCGTCGCCTGACCGACCTAACCACGCAACCAACCT TGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACAACGACTAAG TTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATT AATTTCTTCACCATCTTGTTCGTACGTTTCACCATTTGTAAATCTGAAACAAATTTTGAT CAAAAAA



consensusID : consensus_12306#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence
                              [ACCCGACATAATGGGCGAGGCCGACACCGACGGGGGCGGCCTCATCAGCTTCGAGGAGTTNACCGCCATCATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCCTTGTGAGCGACATGGACATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATNTAGTGAAAAATNTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTAAAAAAAAAAAAAA]

[+] EMBL AU173512             [ACCCGACATAATGGGCGAGGCCGACACCGACGGGGGCGGCCTCATCAGCTTCGAGGAGTTNACCGCCATCATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCCTTGTGAGCGACATGGACATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATNTAGTGAAAAATNTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTAAAAAAAAAAAAAA]


>consensus_12306#3 ACCCGACATAATGGGCGAGGCCGACACCGACGGGGGCGGCCTCATCAGCTTCGAGGAGTT NACCGCCATCATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTCGCCGCCCTTGTGAGCGA CATGGACATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTC CGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTT ATTTGATTGAATTGATTGTATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATNTAG TGAAAAATNTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAAT TATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTAAAA AAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12306#0      AGCGGTCAACATGCAGAGCCAGAGGGAGAGGCCCCGCGAAGACCGCGTCCACGAAGAAAC 60
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      CCGAGGCGCAGACCACGCCCATCCATCCGTTCCGCACGCGGCGGCGGCGGCGTCGGCGAC 120
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      -----------------------TTCCGATTCCACCGCGCGCGCACGCCATGAGCGAGCC 37
                                                                                   

consensus_12306#0      GGCGACGGAGACGGCGACGCGAACCATGTCCCTCCACGCCGGCGGCGTCGTCGTCGTCGA 180
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ----------------------------------------------ACCGCGAGAGGTCA 14
consensus_12306#1      GGCCACCACCACCCCCACCCCCACCCCCGCCGGAGACCACGACGCAGCCGCCACCGCATG 97
                                                                                   

consensus_12306#0      CGGGAAGGAGAAGGGGAAGAAGGAGGAGGG-GGAGGGGAAGCGGAAGGGGAAGGCCCCAG 239
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      CAGATCCACAAGAGAAAAGAAAACACACGT-ACATCGAGATATGACAACAATGGCGGCGA 73
consensus_12306#1      CAAGCCTGCGGAGACGACCACGGCCCTGATCACCTGCAGGAGCAGCAGCTGCAGCGCCCA 157
                                                                                   

consensus_12306#0      CTAC-GGCGGAGGCGGTCCGCGGGCG----CGCGCGGCTGCGCGGGGAGCAGCTGCGCCA 294
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GGAG-GTCAGAAGCAGCACCGGCTCC----GCAGCAGCTGCGGGGGAGCCAGCTGAAGCA 128
consensus_12306#1      GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGCCGCTCGGCGACGACCAGCTGGGTGA 217
                                                                                   

consensus_12306#0      GCTGCACGAGATCTTCCTCCGGTTCGACCTCGACGGCGACGGGAGCCTCACCAAGCTGGA 354
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GCTCCGGGAGCTGTTCCGGCGGTTCGACATGAACGGCGACGGCAGCCTGACGCAGCTGGA 188
consensus_12306#1      GCTGCGGGAGATCTTCCGCTCCTTCGACCGCAACGGCGACGGCAGCCTGACGCAGCTGGA 277
                                                                                   

consensus_12306#0      GCTCGCCGCGCTCCTCCGCTCTCTCGGCCTCCGCCCGGCCGCGGGGGACGAGATCCACGC 414
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GCTGGCGGCGCTGCTGCGGTCGCTGGGGCTGCGCCC---CACGGGCGACGAGGTGCACGC 245
consensus_12306#1      GCTCGGGTCCCTCCTCCGCTCCCTCGGCCTCAAGCC---CAGCACCGACGAGCTGGACTC 334
                                                                                   

consensus_12306#0      CCTCATCGCCGCCATCGACGCCGACGGCAACGGCACCGTCGAGTTCGACGAGCTCGCCTC 474
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GCTGCTCGCCGGGATGGACGCCAACGGCAACGGGTCGGTGGAGTTCGACGAGCTGGCGGC 305
consensus_12306#1      CCTCATCCAGCGCGCCGACACCAACTCCAACGGCCTCATCGAGTTCTCCGAGTTCGTCGC 394
                                                                                   

consensus_12306#0      CTCCCTCGCCGACCTCATCCTCGGCCCGTGCCGCCCCTCCGTCGCCGTCGACCAGGCGGA 534
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GGCGATCGCGCCGGTGCTCACCACGCAGACGCACCTG---------GTGGACCAGGCGCA 356
consensus_12306#1      CCTCGTCGCGCCCGAGCTCCTC-TACGACCGCGCCCC--------CTACTCCGAGGACCA 445
                                                                                   

consensus_12306#0      GCTCGCCGAGGCCTTCAGGGCCTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGA 594
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      GCTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCCGCCGA 416
consensus_12306#1      GATCCGCCGCCTCTTCAACATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGA 505
                                                                                   

consensus_12306#0      GCTCGCGCGCTCCATGGCGCGGATGGGCCACCCCATCTGCTACGCCGAACTCACCGACAT 654
consensus_12306#3      ---------------------------------------------------ACCCGACAT 9
consensus_12306#2      GCTCGCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGAT 476
consensus_12306#1      GCTCGCCCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGTCAAGGAGCTCACCGGCAT 565
                                                                            *    **

consensus_12306#0      GATGCGCGAGGCCGACACCGACGGCGACGGCCTCATCAGCTTCGAGGAGTTCACCGCCAT 714
consensus_12306#3      AATGGGCGAGGCCGACACCGACGGGGGCGGCCTCATCAGCTTCGAGGAGTTNACCGCCAT 69
consensus_12306#2      GATGCGCGACGCCGACACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGT 536
consensus_12306#1      GATCAAGGAAGCCGACACCGACGGCGACGGCCGCATCAGCTTCCAGGAATTCTCCCGCGC 625
                        **    ** ************** * ***   ********** **** **  **  *  

consensus_12306#0      CATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTC---GCCGCC-TTGTGAGCGACATGGA 770
consensus_12306#3      CATGGCCAAGTCCGCCCTCGATTTCCTCGGCCTC---GCCGCCCTTGTGAGCGACATGGA 126
consensus_12306#2      CATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTC---GCC-------TGACCGACCTAAC 586
consensus_12306#1      CATCACCGCCGCCGCATTTGACAACATCTTCTCCTGAGAATATAGCATCAGTGGCATTCA 685
                       ***  **    ****  * **   * **  *  *   *         * *  * * *   

consensus_12306#0      CATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCC 830
consensus_12306#3      CATGGATCGATGCTTCATCTCCTTCTTCCTCTGGTTAGCTTTGGACTTCTTCTCCGTTCC 186
consensus_12306#2      CACGCAACCAACCTTG----CCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTT 642
consensus_12306#1      CATGCATCGAT-----------CGCGGCTGTTCATCAGCCGATCGCTTCGTCAG-ATGTT 733
                       ** * * * *              *  *      * ***       *         *   

consensus_12306#0      TGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGA 890
consensus_12306#3      TGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGA 246
consensus_12306#2      TAGGACACAACGACTAAGTTTTTCT--------------AGCGTAGCTATGACCATGTGT 688
consensus_12306#1      TGGGGGAGATCAGATCAGATCA--------------------GAATTCAGAATCAGATCA 773
                       *         *   *                             *   *     *  *  

consensus_12306#0      TTGAATTGATTGTAT-CATTATGTGTTGCTGTAAATATTGTGCAA-TGTTATCTAGTGAA 948
consensus_12306#3      TTGAATTGATTGTAT-CATTATGTGTTGCTGTAAATATTGTGCAA-TGTTATNTAGTGAA 304
consensus_12306#2      AACGCCTAAATGTGTACAAATTTTGATGAATTAATTTCTTCACCA-TCTTGTTC-GTACG 746
consensus_12306#1      GTGGGGTAAATTTAGGTCAGGTGTTCTTCTTCATATGTGATCGAGCTCTTGTGAATAACG 833
                             * * * *        * *  *     *  *          * ** *        

consensus_12306#0      AAATCTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATG 1008
consensus_12306#3      AAATNTCAATTGTTATCCAGGAACAACATAGATGATCGGGAAATGCCTGACCAAATTATG 364
consensus_12306#2      TTTCACCATTTGTAAATCTGAAACAAATT--TTGATCAAAAAA----------------- 787
consensus_12306#1      AATAAATCTTTGTAAAACAAACAGAAGTAAAACATACGA--------------------- 872
                                **** *  *    * **          *                       

consensus_12306#0      AAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTATCAGTAT 1068
consensus_12306#3      AAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTAAAAAAAA 424
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      TTGAAACTGGCTGTTTAATATATGCACAAACAAGATGATGAAGTTTGCTTTTGAAGCACT 1128
consensus_12306#3      AAAAAA------------------------------------------------------ 430
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      TGAAAGAAAGAACTCAAACACACATCATAGAGGTCCTTGCAGTGCTTGTTTAATTTGCAA 1188
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      GCCTTTCTGAACGAACTTGCATATTCTTCTTCACAAAAAACAGAGTATGGATGATGTACT 1248
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      GAGCCTCAATTGACATAGAGGTCAAAAATCAAAGTTTGAGCTTCTGTTATCAACTTATCA 1308
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      TTATTTATTTTTGAGAGGTTCAGCTGTAGTAATTCTTAAAAGTGCAGCAAAAGGATTTTG 1368
consensus_12306#3      ------------------------------------------------------------
consensus_12306#2      ------------------------------------------------------------
consensus_12306#1      ------------------------------------------------------------
                                                                                   

consensus_12306#0      CTTGCTTAATTTGTGCTTCTGTTT 1392
consensus_12306#3      ------------------------
consensus_12306#2      ------------------------
consensus_12306#1      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)