These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1583 fasta sequence [CAGCGAAATCACAGGACTAGAATACTTGCTGACTACTGAGGCGAAAGGATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCGACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCAGCCCGTGCCGCCCTTGGTGAATGGGGGCGTCCAGCAGCTGACATCACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAAACACCGTCCGCACTTCCCTTCTCTTCCTTGGCTGCTCCGGTGGCGCTGCCGCGCTCCGCACCGCCAAGGACATTGCTGAGAACAACCCAGGGAGCCGCGTCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA-TTG-CTG-CTGA-GGAGAGT-CCCTTCCTAGAGCTTCAG-TTCTCAA-CACAGGAGTT-CCTACCAGGGACGGA-CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT-CAAACTGGGGCGTGATTTG-CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT-GGGCTGTGCATCCTGGTGGTCCAGCAATAC-TGAACAGGC-TAGAGG-TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAACAATGTGAGGTACTCTAGTTTGAATGCAAGATACTTGAAAAAATATCAGGCAATACATTGCATCCTGTTACATTGTCAAAAAAAAAAATTTTCCAGAGTATCTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK105510 [CAGCGAAATCACAGGACTAGAATACTTGCTGACTACTGAGGCGAAAGGATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCGACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCAGCCCGTGCCGCCCTTGGTGAATGGGGGCGTCCAGCAGCTGACATCACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAAACACCGTCCGCACTTCCCTTCTCTTCCTTGGCTGCTCCGGTGGCGCTGCCGCGCTCCGCACCGCCAAGGACATTGCTGAGAACAACCCAGGGAGCCGCGTCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAACAATGTGAGGTACTCTAGTTTGAATGC ] [+] EMBL BP184631 [ CAGGACTAGAATACTTGCTGACTACTGAGGCGAAAGGATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCGACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCA CCCGTGCCG CCTTGGTGAATGGGGGCGTCCAGCAGCTGACATCACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAA ] [+] EMBL AB110182 [ CAGGACTAGAATACTTGCTGACTACTGAGGCGAAAGGATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCGACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCAGCCCGTGCCGCCCTTGGTGAATGGGGGCGTCCAGCAGCTGACATCACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAAACACCGTCCGCACTTCCCTTCTCTTCCTTGGCTGCTCCGGTGGCGCTGCCGCGCTCCGCACCGCCAAGGACATTGCTGAGAACAACCCAGGGAGCCGCGTCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGT ] [+] EMBL OSCHSLKGN [ ATACTTGCTGACTACTGAGGCGAAAGGATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCAACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCAGCCCGTGCCGCCCTTGGTGAATGGGGGCGTCCAGCAGTTGACATTACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAAACACCGTCCGCACTTCCCTTCTCTTCCTTGGCTGCTCCGGTGGCGCTGCCGCGTTCCGCACCGCCAAGGACATTGCTGAGAACAACCCAGGGAGCCGCGTCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAGCCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCTTTGAACTCCAGCGAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTACGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTAAGGGCTGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAA GGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGACCTTG AACATCTCATTAGGAGCATAGTTGTCTTTACAGCATCTGTGCACTCCATAGTTATTGTTTTACTGTAATCTCTG TTTATGTTTCAAACAATGTGAGGTACCCTAGTTTGAATGCCAGATACTTGGGAAAATTTCGGGCAATACATTGCATCCTGTTACATTGTCATGTATAGTAATTTTCCAGAGTATCTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL D50576 [ ATACCGGGTGGCGAAGATGGCTGACCTTGGATTCGGCGATGCCAGGAGTGGCAATGGCAGCAGGAGCCAATGCTCCAGGGGGAAGGCGATGCTGCTCGCCCTCGGCAAGGGCCTCCCTGAGCAAGTTCTTCCCCAGGAGAAGGTCGTCGAGACCTACCTCCAGGACACCATCTGCGACGATCCTGCAACAAGGGCAAAGCTGGAAAGACTTTGCAAGACCACCACAGTGAGGACAAGGTACACTGTCATGTCAAAGGAGCTCCTAGACGAGCACCCAGAGCTCAGGACTGAGGGAACTCCAACACTGACGCCACGGCTTGACATCTGCAATGCTGCAGTGCTTGAGCTTGGTGCTACTGCAGCCCGTGCCGCCCTTGGTGAATGGGGGCGTCCAGCAGCTGACATCACCCACCTTGTCTACATCTCGTCCAGTGAGCTTCGCCTCCCAGGGGGTGACCTTTTCCTGGCAACTCGCCTTGGCCTCCATCCAAACACCGTCCGCACTTCCCTTCTCTTCCTTGGCTGCTCCGGTGGCGCTGCCGCGCTCCGCACCGCCAAGGACATTGCTGAGAACAACCCAGGGAGCCGCGTCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAACAATGTGAGGTACTCTA ] [+] EMBL AU162247 [ TCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAA ] [+] EMBL AU164145 [ TCCTTGTAGTAGCCGCGGAGACGACGGTGCTGGGATTCCGGCCACCAAGTCCTGACCGTCCTTACGATCTTGTTGGTGCTGCCCTGTTTGGTGACGGCGCATCAGCTGCGATCATTGGAGCAGGCCCCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCTGGGGCTGTGCATCCTGGTGGTCCAGCAATACTTGANCAGGCTTAGAGGTTTTGCCTTGAACc ] [+] EMBL BP184632 [ CCA TTG CTG CTGA GGAGAGT CCCTTCCTAGAGCTTCAG TTCTCAA CACAGGAGTT CCTACCAGGGACGGA CAAGGTAATTGATGGCAAGATCACTGAGGAAGGGATTAATTT CAAACTGGGGCGTGATTTG CCCGAAAAGATTGAAAACCGTATAGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAAAAA ] [+] EMBL C99729 [ CCATTTGCCTGCCTGAGGGAGANTCCCCTCCCTAGGGCTTCAGTTTCTCAACCCCNGGAGTTCCCTACCAGGGACGGACCAAGGTNATTGATGGCAAGATCACTGAGGAAGGGATTAATTTCCAAACTGGGGCGTGATTTGCCCCGAAAAGATTGAAAACCGTATNGAAGGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCT GGGCTGTGCATCCTGGTGGTCCAGCAATAC TGAACAGGC TAGAGG TTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAAGAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAACAATGTGAGGTACTCTAGTTTGAATGCAAGATACTTGAAAAAATATCAGGCAATACATTGCATCCTGTTACATTGTCAAAAAAAAA ] [+] EMBL C99520 [ gaanATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCAC TTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAAGGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAAACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTTATTGTTTTACTGTAATCTATGTTTTATGTATCAAACAATGTGAGGTACTCTAGTTTGAATGCAAGATACTTGAAAAAATATCAGGCAATACATTGCATCCTGTTACATTGTCAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||