cluster # 12308

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Oryza sativa
cluster # 12308 cluster # 12308 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12308#0 length = 938 sequences # 5

consensus_12308#1 length = 393 sequences # 4
consensus_12308#2 length = 294 sequences # 1

consensusID : consensus_12308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 938
fasta sequence

                              [GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCCACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGGCGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT-AAATAATGCCTACAC-AAATAGC-TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATTATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG]

[+] EMBL AK070095             [GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCCACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGGCGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACGTCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATTATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG]
[+] EMBL CB967406             [                                                                                                                CGAGGCGGCGGCGAGGCG TCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAA GNCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BU673806             [                                                                                                                  AGGCGGCGGCGAGGCGTT CGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAAATAATGCCTACACAAAATAGCTTTGAAGCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA998199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAaaaaa                                                     ]
[+] EMBL CA998965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_12308#0
GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCC
ACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGG
CGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGG
CGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGA
GCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACT
CGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGA
AGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCC
CATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACAAATAGCTT
GAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGT
TTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTC
TAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCG
TGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGC
TTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCA
CTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGG
TGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATTATG
CTAATTAACATACTTGTACTCGAAAACCAATAACCATG

consensusID : consensus_12308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 393
fasta sequence

                              [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT-CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT-GGATATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU163708             [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094344             [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCA                                      ]
[+] EMBL AU163713             [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGGATATGCCCTGAATGG                                                 ]
[+] EMBL AU058115             [tcCCTGCAATTCCTTGTGGTGTTTACCGGTATCCCNCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGANTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATANCTGGCGTGANACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAANTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCAAAAAAA                                ]




>consensus_12308#1
TACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTG
TTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTG
ATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAAT
GAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTA
GTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTAT
GACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12308#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCATCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGTACGACTGGAGCTATACATCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTTCCACGACGGTCAACACTCTGGACGTTCGCTTGCCCCACCTGGACGACACGCTACGGACTTACCATCCAGGCA]

[+] EMBL CB966251             [CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCATCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGTACGACTGGAGCTATACATCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTTCCACGACGGTCAACACTCTGGACGTTCGCTTGCCCCACCTGGACGACACGCTACGGACTTACCATCCAGGCA]




>consensus_12308#2
CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGC
AGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCATCGTTAACTGC
TGCTAATGAGCGACTGCTAGGACGGTGGACGGTGTACGACTGGAGCTATACATCGAACCT
GCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTTCCACGACGGTCAACACTC
TGGACGTTCGCTTGCCCCACCTGGACGACACGCTACGGACTTACCATCCAGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12308#0      GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCC 60
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      ACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGG 120
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      CGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGG 180
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      CGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGA 240
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      GCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACT 300
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      CGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGA 360
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      AGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCC 420
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      CATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACAAATAGCTT 480
consensus_12308#1      ------------------------------------------------------------
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      GAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGT 540
consensus_12308#1      --------------------------------------TACCTGCAATTTCTTGTGGTGT 22
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      TTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTC 600
consensus_12308#1      TTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTC 82
consensus_12308#2      ------------------------------------------------------------
                                                                                   

consensus_12308#0      TAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCG 660
consensus_12308#1      TAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCG 142
consensus_12308#2      ---------CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGC 51
                                  * * **          ** ** *   *  *    *          *   

consensus_12308#0      TGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGC 720
consensus_12308#1      TGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGC 202
consensus_12308#2      TCAAGCTGCAGAAGGGCGAC-ATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCA- 109
                       * *  ****  * *     *  ****  * **     *  *  * *      ** *    

consensus_12308#0      TTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCA 780
consensus_12308#1      TTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCA 262
consensus_12308#2      TCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGT--ACGACTGGAGCT 167
                       *   *  *** **  * *  *   * *   *  * ** *  *  **     *   **** 

consensus_12308#0      CTAGAGCCGGTTGGCCATGATAAAACCTGTATCT-GTATGACAGTATGAGTTGCTTAGTG 839
consensus_12308#1      CTAGAGCCGGTTGGCCATGATAAAACCTGTATCT-GTATGACAGTATGAGTTGCTTAGTG 321
consensus_12308#2      ATACA-----TCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTT 222
                        ** *     * *  * ** *  * **** * ** *** *** * ***   * *   ** 

consensus_12308#0      GTGAATGGAT--ATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATT 897
consensus_12308#1      GTGAATGGAT--ATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAA 379
consensus_12308#2      CCACGACGGTCAACACTCTGGACG-TTCGCTTGCCCCACCTGGACGACACGCTACGGACT 281
                              * *  *  * *** * *      **  *  *                   *  

consensus_12308#0      ATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG 938
consensus_12308#1      AAAAAAAAAAAAAA--------------------------- 393
consensus_12308#2      TACCATCCAGGCA---------------------------- 294
                                   *