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Oryza sativa
cluster # 12320 cluster # 12320       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12320#0 length = 2047 sequences # 8  
consensus_12320#1 length = 570 sequences # 2  

consensusID : consensus_12320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2047
fasta sequence
                              [AGTGACCACACAAGCTTACCTGAGCTTGAGAGCTCAGCATTATCTTCTCAGTCTTGTTCTCCCTTCACAGTTTCAGATTTATGCTCTTTGGCTGTCAAGACTCGAGCAGTCTGTTGCCTTCACCTTGTGCTTATGTTGAGGATAGAGGCTCTGTTGTATTATCCTGTCACAAGGCCAAGATGGAAAATTAATGCTAGTCAAGATGCCACGCAAGAAACTGGCCTGATTGATGCAGAAATTAATTCTTATGCCTATAGTGAAAGGAAGAACAGGAAATACAACGGCGCCTACATCGATAAAGATGGTGTATCAAGGACCTTCGATCGAAAGAAAATATCAAGAAAAAGGGGGGGTGCTATGAGAGGCCGGGGCTGGAAGTATGGCTCTGGTTTTGTAGATGGAGTCTTCCCTGTGCTCAGTCCAATGGCACAGGATATCTTAGAATTTGTTCAGAAGGGAACAGACGTTGCAAAAATCTG-GGAATCT-TTG-GATAACA-TTCC-TTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCA---------GTCTGCGAGTGGATCCTGTACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGCAAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGTGTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTGCACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACTGTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAGGTGTACCAAAGGATGAAGAGAGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATGATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATGAAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCGAGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCACGAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCGCAAGGCGCATCGGAGATCTTCTCCTTGATGCAGCACATGGGGTGTGAGCCTGACAGAGCTTCATACAACATCTTGGTAGATGCATATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCGGTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTGCTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTGCACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCA-TATAATAATAAAAAAAAACCCAA-CACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACCTTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCAAAAAAAAACAA]

[+] EMBL AK065022             [AGTGACCACACAAGCTTACCTGAGCTTGAGAGCTCAGCATTATCTTCTCAGTCTTGTTCTCCCTTCACAGTTTCAGATTTATGCTCTTTGGCTGTCAAGACTCGAGCAGTCTGTTGCCTTCACCTTGTGCTTATGTTGAGGATAGAGGCTCTGTTGTATTATCCTGTCACAAGGCCAAGATGGAAAATTAATGCTAGTCAAGATGCCACGCAAGAAACTGGCCTGATTGATGCAGAAATTAATTCTTATGCCTATAGTGAAAGGAAGAACAGGAAATACAACGGCGCCTACATCGATAAAGATGGTGTATCAAGGACCTTCGATCGAAAGAAAATATCAAGAAAAAGGGGGGGTGCTATGAGAGGCCGGGGCTGGAAGTATGGCTCTGGTTTTGTAGATGGAGTCTTCCCTGTGCTCAGTCCAATGGCACAGGATATCTTAGAATTTGTTCAGAAGGGAACAGACGTTGCAAAAATCTG GGAATCT TTG GATAACA TTCC TTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCATGGATATAGGTCTGCGAGTGGATCCTGTACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGCAAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGTGTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTGCACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACTGTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAGGTGTACCAAAGGATGAAGAGAGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATGATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATGAAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCGAGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCACGAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCGCAAGGCGCATCGGAGATCTTCTCCTTGATGCAGCACATGGGGTGTGAGCCTGACAGAGCTTCATACAACATCTTGGTAGATGCATATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCGGTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTGCTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTGCACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCA TATAATAATAAAAAAAAACCCAA CACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACCTTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCAAAAAAAAACAA]
[+] EMBL CB637706             [                                                                              TTATGCTCTTTGGCTGTCAAGACTCGAGCAGTCTGTTGCCTTCACCTTGTGCTTATGTTGAGGATAGAGGCTCTGTTGTATTATCCTGTCACAAGGCCAAGATGGAAAATTAATGCTAGTCAAGATGCCACGCAAGAAACTGGCCTGATTGATGCAGAAATTAATTCTTATGCCTATAGTGAAAGGAAGAACAGGAAATACAACGGCGCCTACATCGATAAAGATGGTGTATCAAGGACCTTCGATCGAAAGAAAATATCAAGAAAAAGGGGGGGTGCTATGAGAGGCCGGGGCTGGAAGTATGGCTCTGGTTTTGTAGATGGAGTCTTCCCTGTGCTCAGTCCAATGGCACAGGATATCTTAGAATTTGTTCAGAAGGGAACAGACGTTGCAAAAATCTG GGAATCT TTG GATAACA TTCC TTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB680497             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gATCTGTGGAATCTATTGAGATAACAGTTCCATTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCA         GTCTGCGAGTGGATCCTGTACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGCAAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGTGTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTGCACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACTGTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAGGTGTACCAAAGGATGAAGAGAGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATGATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATGAAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCGAGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCACGAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BE229812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CT TTG GATAACA TTCC TTCCACACACAATCTTTTTGATGATCTGGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCA         GTCTGCGAGTGGATCCTGTACAGGAGCTCATTCCGTCCTGACATCNTCTGCTACAACCTGCTCATANAATCCTATGGCAAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGTGTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTGCACCGAGCAGAAAGCGTGATCTCGGAGATGCGCGA CACGGGATTCCTCCAAATGCTACTGTATATAATGCTTACTTGGATGGATTACTGAA GCAAGATGTNCCGAAAAGGGNGNCGAAGTGTTCCNAAGGATGAA AAAAAACGGTGCCNAACTAACNCNGANACA TCCCCCCGATGATCAATGTNTTCGGGAAGGCAAA CCACCAATGTC TCCATGAAAATTTTCCACCAAATAAAtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK119658             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTG GATAACA TTCC TTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCTGTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCA         GTCTGCGAGTGGATCCTGTACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGCAAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCCCAGTGTGTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTGCACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACTGTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAGGTGTACCAAAGGATGAAGAGGGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATGATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATGAAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCGAGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCACGAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCGCAAGGCGCATCGGAGATCTTCTCCTTGATGCAGCACATGGGGTGTGAGCCTGACAGAGCTTCATACAACATCTTGGTAGATGCATATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCGGTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTGCTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTGCACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCA TATAATAATAAAAAAAAACCCAA CACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACCTTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGG                      ]
[-] EMBL CB680498             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCGGTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCTCCGACGATGAAGTCCCACATGTTGCTGCTGGCGGAGCACGCCAGGTCCGGCAACGTGACGAGGTGTGAGGAGGTGATGGGTCAGCTGCACAAGTCCGGCCTCACCCCGGACACTTTTGCGGTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTAGACGACATGGAGAGCCTTTTAGCCGCCATGGAGCGCCGCGGTGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCTCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGAGAGGGGGCTCGCCGCCGACGTGGTGAAGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGTGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCAGTATAATAATAAAAAAAAACCCAACCACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTAAGGATGTACATTACAATACTACCTTAGTTTTCTTTCAAaaaagga                                             ]
[-] EMBL CB679470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGAGGCGGTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTGCTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTGCACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCA TATAATAATAAAAAAAAACCCAA CACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACGTTAGTTTTCTTTTAATGTATGCCGCCATTAATT                                  ]
[+] EMBL CB679469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tgccctAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTGCTGGCGGCGCACGCCAGGTCCGGCAACGCGACTAGGTGCTAGGAGGTGATGGCGCAGCTGCACAATTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCCCGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGACGCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGGAGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCCACGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACTGCGAGGGTGCTGCTGGCGGCGTGCTCCCACAAGCGCCAAGTGGAGCATGTCACCGCCATCGTCACGTCCATGCGCAAGAATCCCAAGACACTCTTCACCA TATAATAATAAAAAAAAACCCAA CACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGCATAAATGTACATTACTATACTACCTTAGTT                                                             ]


>consensus_12320#0 AGTGACCACACAAGCTTACCTGAGCTTGAGAGCTCAGCATTATCTTCTCAGTCTTGTTCT CCCTTCACAGTTTCAGATTTATGCTCTTTGGCTGTCAAGACTCGAGCAGTCTGTTGCCTT CACCTTGTGCTTATGTTGAGGATAGAGGCTCTGTTGTATTATCCTGTCACAAGGCCAAGA TGGAAAATTAATGCTAGTCAAGATGCCACGCAAGAAACTGGCCTGATTGATGCAGAAATT AATTCTTATGCCTATAGTGAAAGGAAGAACAGGAAATACAACGGCGCCTACATCGATAAA GATGGTGTATCAAGGACCTTCGATCGAAAGAAAATATCAAGAAAAAGGGGGGGTGCTATG AGAGGCCGGGGCTGGAAGTATGGCTCTGGTTTTGTAGATGGAGTCTTCCCTGTGCTCAGT CCAATGGCACAGGATATCTTAGAATTTGTTCAGAAGGGAACAGACGTTGCAAAAATCTGG GAATCTTTGGATAACATTCCTTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCT GTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCAGTCTGCGAGTGGATCCTG TACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGC AAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGT GTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTG CACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACT GTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAG GTGTACCAAAGGATGAAGAGAGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATG ATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATG AAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCG AGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCAC GAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCG CAAGGCGCATCGGAGATCTTCTCCTTGATGCAGCACATGGGGTGTGAGCCTGACAGAGCT TCATACAACATCTTGGTAGATGCATATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCG GTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTG CTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTG CACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCC CGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGAC GCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGG AGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACG TGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATG GTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTG GCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCAC AAGAAGCCCAAGACACTCTTCACCATATAATAATAAAAAAAAACCCAACACTTTGCATAT ATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAATACTACC TTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCAAAAA AAAACAA



consensusID : consensus_12320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 570
fasta sequence
                              [ACGTACAACGTGCCGGTGACGCGTACGGGCGCCCGGGTACGTGGGGAGGATGGAGCGGCGTTCCGCCGGTGCGGCGAGGGGGCTCCC-CCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCCAGACACTCTTCACCATATAATAATAAAAAAAAACCCACACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAAATACTACCTTAGTTTTCTTTTAATGTAT-CCNCC-TTAATTCTAAAGTAGCGGCTAACCATTCATCTTAAAAATTTTAAAAAAATATTGTAAATATGCTACTATCTCTGTTTTTTAATATGACTAACCAACGTCATATATTTAGGGATGGAGGGAGTAAATTGTAAGTCAAAAAAAAAA]

[+] EMBL BM039047             [ACGTACAACGTGCCGGTGACGCGTACGGGCGCCCGGGTACGTGGGGAGGATGGAGCGGCGTTCCGCCGGTGCGGCGAGGGGGCTCCC CCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCCAGACACTCTTCACCATATAATAATAAAAAAAAACCCACACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAAATACTACCTTAGTTTTCTTTTAATGTAT CCNCC TTAATTCTAAAGTAGCGGCTAACCATTCATCTTAAAAA                                                                                                          ]
[+] EMBL BI813721             [        CGTGCCGGTGACGCGTAC GGCGCCCGGGTACGTGGGGAGGATGGAGCGGCGTTCCGCCGGTGCGGCGAGGGGGCTCCCGCCGACGTGGTGACGTGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCAAGACACTCTTCACCATATAATAATAAAAAAAAACCCACACTTTGCATATATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTAC AATACTACCTTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCATCTTAATTATTTTAAAAAAATATTGTAAATATGCTACTATCTCTGTTTTTTAATATGACTAACCAACGTCATATATTTAGGGATGGAGGGAGTAAATTGTAAGTCAAAAAAAAAA]


>consensus_12320#1 ACGTACAACGTGCCGGTGACGCGTACGGGCGCCCGGGTACGTGGGGAGGATGGAGCGGCG TTCCGCCGGTGCGGCGAGGGGGCTCCCCCGACGTGGTGACGTGGACGGCGAGGATGGGGG CGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATGGTGGAGGAGATGGTGGACG CCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTGGCGGCGTGCTCCGACGAGC GCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGAAGCCCCAGACACTCT TCACCATATAATAATAAAAAAAAACCCACACTTTGCATATATAATTGCATTATTATTACA TGTATAATAATACAGTATAAATGTACATTACAAATACTACCTTAGTTTTCTTTTAATGTA TCCNCCTTAATTCTAAAGTAGCGGCTAACCATTCATCTTAAAAATTTTAAAAAAATATTG TAAATATGCTACTATCTCTGTTTTTTAATATGACTAACCAACGTCATATATTTAGGGATG GAGGGAGTAAATTGTAAGTCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12320#0      AGTGACCACACAAGCTTACCTGAGCTTGAGAGCTCAGCATTATCTTCTCAGTCTTGTTCT 60
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CCCTTCACAGTTTCAGATTTATGCTCTTTGGCTGTCAAGACTCGAGCAGTCTGTTGCCTT 120
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CACCTTGTGCTTATGTTGAGGATAGAGGCTCTGTTGTATTATCCTGTCACAAGGCCAAGA 180
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      TGGAAAATTAATGCTAGTCAAGATGCCACGCAAGAAACTGGCCTGATTGATGCAGAAATT 240
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      AATTCTTATGCCTATAGTGAAAGGAAGAACAGGAAATACAACGGCGCCTACATCGATAAA 300
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GATGGTGTATCAAGGACCTTCGATCGAAAGAAAATATCAAGAAAAAGGGGGGGTGCTATG 360
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      AGAGGCCGGGGCTGGAAGTATGGCTCTGGTTTTGTAGATGGAGTCTTCCCTGTGCTCAGT 420
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CCAATGGCACAGGATATCTTAGAATTTGTTCAGAAGGGAACAGACGTTGCAAAAATCTGG 480
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GAATCTTTGGATAACATTCCTTCCACACACAATCTTTTTGATGATCTTGTGAATGTCGCT 540
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GTCCAATTCCGTATGAACAAGAAATGGGATCTGATCATTCCAGTCTGCGAGTGGATCCTG 600
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      TACAGGAGCTCATTCCGTCCTGACATCATCTGCTACAACCTGCTCATAGAATCCTATGGC 660
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      AAGAAGCGTCAGCTGAACAAGGCAGAGTCAATCTACATGGCTCTTCTGGAAGCTCAGTGT 720
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GTGCCAACTGAAGACACCTATGCTCTTCTCCTGCGCGCTTACTGCAACGCTGGATCGCTG 780
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CACCGAGCAGAAGGCGTGATCTCGGAGATGCGCGAGCACGGGATTCCTCCAAATGCTACT 840
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GTATATAATGCTTACTTGGATGGATTACTGAAGGCAAGATGTACCGAAAAGGCGGTCGAG 900
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GTGTACCAAAGGATGAAGAGAGAACGGTGCAGAGCTAACACGGAGACATTCACCCTGATG 960
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      ATCAATGTGTACGGGAAGGCAAAGCAACCAATGTCATCGATGAAAGTTTTCAACGAGATG 1020
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      AAGTCGATTGGGTGCAAGCCTAATATCTGCACTTACACTGCCCTGGTGAATGCATTTGCG 1080
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      AGGGAAGGCCTGTGCGAGAAGGCTGAAGAAGTGTTCGAGGAGATGCAGCAGGCAGGGCAC 1140
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GAGCCTGACGTGTATGCTTACAATGCCCTCATGGAAGCTTACAGCCGCGCTGGATTGCCG 1200
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CAAGGCGCATCGGAGATCTTCTCCTTGATGCAGCACATGGGGTGTGAGCCTGACAGAGCT 1260
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      TCATACAACATCTTGGTAGATGCATATGGAAGAGCCGGCCTTCATGAAGATGCGGAGGCG 1320
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GTGTTCGAGGAGCTGAAGCAGCGGGGGATGTCGCCGACGATGAAGTCCCACATGCTGCTG 1380
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CTGGCGGCGCACGCCAGGTCCGGCAACGCGACGAGGTGCGAGGAGGTGATGGCGCAGCTG 1440
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CACAAGTCCGGCCTCACCCCGGACACCTTCGCGCTGAACGCCATGCTCAACGCCTACGCC 1500
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      CGCGCCGGCCGCCTCGACGACATGGAGCGCCTCTTCGCCGCCATGGAGCGCCGCGGCGAC 1560
consensus_12320#1      ------------------------------------------------------------
                                                                                   

consensus_12320#0      GCCGACGTGGGCACGTACAACGTGGCGGTGAACGCGTACGGGCGCGCCGGGTACGTGGGG 1620
consensus_12320#1      ------------ACGTACAACGTGCCGGTGA-CGCGTACGGGCGC-CCGGGTACGTGGGG 46
                                   ************ ****** ************* **************

consensus_12320#0      AGGATGGAGGCGGCGTTCGCGGCGGTGGCGGCGAGGGGGCTCGCCGCCGACGTGGTGACG 1680
consensus_12320#1      AGGATGGAG-CGGCGTTC-CGCCGGTG-CGGCGAGGGGGCT--CCCCCGACGTGGTGACG 101
                       ********* ******** ** ***** *************  ** **************

consensus_12320#0      TGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATG 1740
consensus_12320#1      TGGACGGCGAGGATGGGGGCGTACGCGAGGAGGAAGGAGTACGGGCGGTGCGTGGGGATG 161
                       ************************************************************

consensus_12320#0      GTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTG 1800
consensus_12320#1      GTGGAGGAGATGGTGGACGCCGGCTGCTACCCGGACGCCGGCACGGCGAGGGTGCTGCTG 221
                       ************************************************************

consensus_12320#0      GCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCAC 1860
consensus_12320#1      GCGGCGTGCTCCGACGAGCGCCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCAC 281
                       ************************************************************

consensus_12320#0      AAGAAGCCCAAGACACTCTTCACCATATAATAATAAAAAAAAACCCAACACTTTGCATAT 1920
consensus_12320#1      AAGAAGCCCCAGACACTCTTCACCATATAATAATAAAAAAAAACCCA-CACTTTGCATAT 340
                       ********* ************************************* ************

consensus_12320#0      ATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAA-TACTAC 1979
consensus_12320#1      ATAATTGCATTATTATTACATGTATAATAATACAGTATAAATGTACATTACAAATACTAC 400
                       ***************************************************** ******

consensus_12320#0      CTTAGTTTTCTTTTAATGTATGCCGCCATTAATTCTAAAGTAGCGGCTAACCATTCA--- 2036
consensus_12320#1      CTTAGTTTTCTTTTAATGTAT-CCNCC-TTAATTCTAAAGTAGCGGCTAACCATTCATCT 458
                       ********************* ** ** *****************************   

consensus_12320#0      -AAAAAAAACAA------------------------------------------------ 2047
consensus_12320#1      TAAAAATTTTAAAAAAATATTGTAAATATGCTACTATCTCTGTTTTTTAATATGACTAAC 518
                        *****    **                                                

consensus_12320#0      ----------------------------------------------------
consensus_12320#1      CAACGTCATATATTTAGGGATGGAGGGAGTAAATTGTAAGTCAAAAAAAAAA 570
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)