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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1024 fasta sequence
[CGCTAGGCTTGCACAACCCTAGCGACAGCGCAGGCAGGGGCTCGTCGTCTCCTCTCTTTCTTCTCTTCTTCTCCCCTCGGCTCTCTCGCACCCTCCCCTCGCCTTTCTCACGCGTCGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGCGCCATCAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGCAGTGTGGGGAGGTGTTCAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCGCGCCACCGCCGCCCGCGCCGCC-GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGGCGTGCGCACCACGGCGAGCAGCGGCCGCGCGCACGACTGCGGCGCGGCGGCGGCGGCGGCGCAGCAGGCGGGCGGGTGCCGGGCAATGCTGGTGTGCCGCGTAATCGCCGGCCGTGTCCGCCGGAACGACGACGATGGCGGTGCGGAGGAGGAGGAGGGAGCGTTCGACTCGGTGGCCGGCGACGAGGCGGCGAGCAGCGTGTACGGCAACCTGGAGGAGCTGTTCGTGGCGAACCCAAGGGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACAACACTCAAAATCAATTAATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATTTCAACATCATA]
[+] EMBL CB644861 [CGCTAGGCTTGCACAACCCTAGCGACAGCGCAGGCAGGGGCTCGTCGTCTCCTCTCTTTCTTCTCTTCTTCTCCCCTCGGCTCTCTCGCACCCTCCCCTCGCCTTTCTCACGCGTCGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGCGCCATCAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGCAGTGTGGGGAGGTGTTCAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCGCGCCACCGCCGCCCGCGCCGCC GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCG ]
[-] EMBL BU667027 [ CCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGCGCCATCAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGCAGTGTGGGGAGGTGTTCAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGAC CCGTCCGCACCCGCTGCCGCGCCACCNCCGCCCGCGCCGCCAGCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGATGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGG ]
[+] EMBL CB641699 [ ACGGGAGCTGTGCGCATGCTCGCAGTGTGGGGAGGTGTTCAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCGCGCCACCGCCGCCCGCGCCGCC GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGGCGTGCGCACCACGGCGAGCAGCGGCCGCGCGCACGACTGCGGCGCGGCGGCGGCGGCGGCGCAGCAGGCGGGCGGGTGCCGGGCAATGCTGGTGTGCCGCGTAATCGCCGGCCGTGTCCGCCGGAACGACGACGATGGCGGTGCGGAGGAGGAGGAGGGAGCGTTCGACTCGGTGGCCGGCGACGAGGCGGCGAGCAGCGTGTACGGCAACCTGGAGGAGCTGTTCGTGGCGAACCCAAGGGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACAACACTCAAAATCAATTAATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATTTCAACATCATA]
[+] EMBL AU164492 [ CAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTG GCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCGCGCCACCGCCGCCCGCGCCGCC GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGGCGTGCGCACC ]
[+] EMBL AU164495 [ GCACCACCAAGCCATTCGCCATGCTGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTCGAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAACGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCGCGCCACCGCCGCCCGCGCCGCC GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGGCGTGCGCACC ]
[-] EMBL CB644862 [ CC GCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGCCCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTGCGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGGCGTGCGCACCACGGCGAGCAGCGGCCGCGCGCACGACTGCGGCGCGGCGGCGGCGGCGGCGCAGCAGGCGGGCGGGTGCCGGGCAATGCTGGTGTGCCGCGTAATCGCCGGCCGTGTCCGCCGGAACGACGACGATGGCGGTGCGGAGGAGGAGGAGGGAGCGTTCGACTCGGTGGCCGGCGACGAGGCGGCGAGCAGCGTGTACGGCAACCTGGAGGAGCTGTTCGTGGCGAACCCAAGGGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACAACACTCAAAATCAATTAATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATT ]
[-] EMBL CB641700 [ CGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGTGCGCACCCGCTCGGCGTGTGCACCTCGGGGAGCAGCGGCCGCGCGCACGACTGCGGCGCGGCGGCGGCGGCGGCGCAGCAGGCGGGCGGGTGCCGGGCAATTCTGGTTTGCCGCGTAATCACCGGCCGTGTCCGCGGGAAAGACGACGATGGCGGTCCGGAGGAGGAGGAGGGAGCGTTTGTCTCGGTGGCCGGCGACGAGGCGGCGAGCAGCGTGTCCGGCAACCTGGAGGAGCTGTTGGTGGCGATCCCAAGGGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACAACACTCAAAATCAATTAATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATT ]
consensusID : consensus_12322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 342 fasta sequence
[GCTCCGCAGCCACGGCGCCGGCGCGTGCGGCGCGTCGCTCTGCGCCATCCGCGACGTGGTCGACGCCGCCAGCTCCGCCTCCGCGGCGTCCACCGCCGCCGCGTCCCTCGACCGCGACACCACCCCGCTCACCCGCTCCTCCCGCCGCGCCCACCGCGCCGCCACCTCCTCCTCCGGCGGCGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGNGCCATCAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGNAGTGTGGGGAGGTGTTCAACAAGGCCTACAGCTTGGAGCACCA]
[+] EMBL AU184027 [GCTCCGCAGCCACGGCGCCGGCGCGTGCGGCGCGTCGCTCTGCGCCATCCGCGACGTGGTCGACGCCGCCAGCTCCGCCTCCGCGGCGTCCACCGCCGCCGCGTCCCTCGACCGCGACACCACCCCGCTCACCCGCTCCTCCCGCCGCGCCCACCGCGCCGCCACCTCCTCCTCCGGCGGCGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGNGCCATCAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGNAGTGTGGGGAGGTGTTCAACAAGGCCTACAGCTTGGAGCACCA]
[+] EMBL AU164491 [GCTCCGCAGCCACGGCGCCGGCGCGTGCGGCGCGTCGCTCTGCGCCATCCGCGACGTGGTCGACGCCGCCAGCTCCGCCTCCGCGGCGTCCACCGCCGCCGCGTCCCTCGACCGCGACACCACCCCGCTCACCCGCTCCTCCCGCCGCGCCCAC ]
[+] EMBL AU184012 [GCTCCGCAGCCACGGCGCCGGCGCGTGCGGCGCGTCGCTCTGCGCCATCCGCGACGTGGTCGACGCCGCCAGCTCCGCCTCCGCGGCGTCCACCGCCGCCGCGTCCCTCGACCGCGACACCACCCCGCTCACCCGNTCCTCCCGCCGNGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12322#0 ------------------------------------------------------------
consensus_12322#1 GCTCCGCAGCCACGGCGCCGGCGCGTGCGGCGCGTCGCTCTGCGCCATCCGCGACGTGGT 60
consensus_12322#0 -CGCTAGGCTTGCACAACCCTAGCGACAGCGCAGGCAG--GGGCTCGTCGTCTCC--TCT 55
consensus_12322#1 CGACGCCGCCAGCTCCGCCTCCGCGGCGTCCACCGCCGCCGCGTCCCTCGACCGCGACAC 120
* ** ** * ** *** * * ** * * * * *** * *
consensus_12322#0 CTTTCTTCTCTTCTTCTCCCCTCGGCTCTCTCGCACCCTCCCCTCGCCTTTCTCACGCGT 115
consensus_12322#1 CACCCCGCTCACCCGCTCCTCCCGCCGCGCCCACCGCGCCGCCACCTCCTCCTCCGGCGG 180
* * *** * **** * ** * * * * * * * ** * * * *** ***
consensus_12322#0 CGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGCGCCAT 175
consensus_12322#1 CGGCGGCGGCCACCACGCCTCCCTCCGTGGCCTCTCCGGTTGCTACGAGTGCCGNGCCAT 240
****************************************************** *****
consensus_12322#0 CAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGCA 235
consensus_12322#1 CAACGTCGAGCCCATGTCAAGGAGGTATCCGAGGCCACGGGAGCTGTGCGCATGCTCGNA 300
********************************************************** *
consensus_12322#0 GTGTGGGGAGGTGTTCAACAAGGCCGACAGCTTGGAGCACCACCAAGCCATTCGCCATGC 295
consensus_12322#1 GTGTGGGGAGGTGTTCAACAAGGCCTACAGCTTGGAGCACCA------------------ 342
************************* ****************
consensus_12322#0 TGTGTCGGAGCTGGGGCCGGAGGACTCGGGGCGAAACATCGTGGAGATAATCTTCAAGTC 355
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 GAGCTGGCAGAAGCGCGACCGTCCGATCTGCCAGATCGACCGCATCCTCAAGGTGCACAA 415
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CGCGGCGCGCACCGTGGCGCGCTTCGAGGCCTACCGCGACGCCGTCCGCACCCGCTGCCG 475
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CGCCACCGCCGCCCGCGCCGCCGCCGACGGCAACGAGCTCCTCCGCTTCCACCCCGCCGC 535
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CCTCGCCTGCCCGCTCGGCCTCAACGGCGCCACCTCGCTCTGCGACGACGACGACGCCTG 595
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CGGCGTGTGCGCGGCGATCCGGCACGGGTTCGCGCCGTGGGCGGGCGCGCACCCGCTCGG 655
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CGTGCGCACCACGGCGAGCAGCGGCCGCGCGCACGACTGCGGCGCGGCGGCGGCGGCGGC 715
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 GCAGCAGGCGGGCGGGTGCCGGGCAATGCTGGTGTGCCGCGTAATCGCCGGCCGTGTCCG 775
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CCGGAACGACGACGATGGCGGTGCGGAGGAGGAGGAGGGAGCGTTCGACTCGGTGGCCGG 835
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 CGACGAGGCGGCGAGCAGCGTGTACGGCAACCTGGAGGAGCTGTTCGTGGCGAACCCAAG 895
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 GGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACA 955
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 ACACTCAAAATCAATTAATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATTTC 1015
consensus_12322#1 ------------------------------------------------------------
consensus_12322#0 AACATCATA 1024
consensus_12322#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||