These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT] [+] EMBL BE040850 [TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT] consensusID : consensus_1233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT] [+] EMBL BE229431 [CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1233#0 ----------------------TCCTCCCCCTCCCGGTTCGGTTCGGGTC---------- 28 consensus_1233#1 CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTC 60 ************************* ** consensus_1233#0 CGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCG 88 consensus_1233#1 CGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATG-GCGGCGC-G 118 ******************* ****************************** ******* * consensus_1233#0 GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTC 148 consensus_1233#1 GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGC-TGGGCCACCGACGACCGCTCCCTC 177 *********************************** ************************ consensus_1233#0 GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 208 consensus_1233#1 GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 237 ************************************************************ consensus_1233#0 ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGAC 268 consensus_1233#1 ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGAC 297 *********************************************** ************ consensus_1233#0 GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCC 328 consensus_1233#1 GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCC 357 ************************************************** ********* consensus_1233#0 CAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGA 388 consensus_1233#1 CAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGR 417 ****** **************************************************** consensus_1233#0 GGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGT 448 consensus_1233#1 G-CTACGGTGGCGGCGGCTACGGTGGTGGTG-CGGCGGCGGTGS-TACG-CCAGCGCCGT 473 * ***************************** *********** **** *** ****** consensus_1233#0 GAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTG 508 consensus_1233#1 GAAGS-GGCTACGGCGGTGGCGGTT----------------------------------- 497 **** ****** *********** consensus_1233#0 GTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCC 568 consensus_1233#1 ------------------------------------------------------------ consensus_1233#0 CTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATA 628 consensus_1233#1 ------------------------------------------------------------ consensus_1233#0 ATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAAC 688 consensus_1233#1 ------------------------------------------------------------ consensus_1233#0 GTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCC 748 consensus_1233#1 ------------------------------------------------------------ consensus_1233#0 AGAGGGTCGCAGCCCAATACCCCT 772 consensus_1233#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||