|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT]
[+] EMBL BE040850 [TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT]
consensusID : consensus_1233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT]
[+] EMBL BE229431 [CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1233#0 ----------------------TCCTCCCCCTCCCGGTTCGGTTCGGGTC---------- 28
consensus_1233#1 CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTC 60
************************* **
consensus_1233#0 CGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCG 88
consensus_1233#1 CGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATG-GCGGCGC-G 118
******************* ****************************** ******* *
consensus_1233#0 GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTC 148
consensus_1233#1 GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGC-TGGGCCACCGACGACCGCTCCCTC 177
*********************************** ************************
consensus_1233#0 GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 208
consensus_1233#1 GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 237
************************************************************
consensus_1233#0 ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGAC 268
consensus_1233#1 ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGAC 297
*********************************************** ************
consensus_1233#0 GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCC 328
consensus_1233#1 GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCC 357
************************************************** *********
consensus_1233#0 CAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGA 388
consensus_1233#1 CAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGR 417
****** ****************************************************
consensus_1233#0 GGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGT 448
consensus_1233#1 G-CTACGGTGGCGGCGGCTACGGTGGTGGTG-CGGCGGCGGTGS-TACG-CCAGCGCCGT 473
* ***************************** *********** **** *** ******
consensus_1233#0 GAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTG 508
consensus_1233#1 GAAGS-GGCTACGGCGGTGGCGGTT----------------------------------- 497
**** ****** ***********
consensus_1233#0 GTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCC 568
consensus_1233#1 ------------------------------------------------------------
consensus_1233#0 CTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATA 628
consensus_1233#1 ------------------------------------------------------------
consensus_1233#0 ATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAAC 688
consensus_1233#1 ------------------------------------------------------------
consensus_1233#0 GTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCC 748
consensus_1233#1 ------------------------------------------------------------
consensus_1233#0 AGAGGGTCGCAGCCCAATACCCCT 772
consensus_1233#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||