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Oryza sativa
cluster # 1233 cluster # 1233       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1233#0 length = 772 sequences # 1  
consensus_1233#1 length = 497 sequences # 1  

consensusID : consensus_1233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence
                              [TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT]

[+] EMBL BE040850             [TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT]


>consensus_1233#0 TCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGG GGTTGGTGGGAAAGCATGAGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCT CGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCT CGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGAC GTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGA CGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGG TGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGG CGGCGGCGGTGGCTACGGCCAACGCCGTGAAGGCGGCTACCGCGGTGGCGGTGGCTACGG TGGCGGCCGGGGTGGCGGCGGTACGGTGGTGGCTACCGCAGCCGGGCGGCGGAACTCCAA CGGAACTGGAGGAACTGACCGGGGGGCCCTAATGGCCAGGTATCTATCTATTTATCAAGC CCCCATAACATCATTCTGTCGTATCATAATAAGGTTGGGAGGAATATAATACTTGGGATG AATGNGAGTTGCCATAGGAGTTCTGAACGTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAA CCCTAACTCCATCCCCAACACCAACTCCAGAGGGTCGCAGCCCAATACCCCT



consensusID : consensus_1233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT]

[+] EMBL BE229431             [CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCTACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGGCTACGGCGGTGGCGGTT]


>consensus_1233#1 CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTC CGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCGGA TGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCTGGGCCACCGACGACCGCTCCCTCGAA GCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACG GGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGACGCC ATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAG TCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGRGCT ACGGTGGCGGCGGCTACGGTGGTGGTGCGGCGGCGGTGSTACGCCAGCGCCGTGAAGSGG CTACGGCGGTGGCGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1233#0      ----------------------TCCTCCCCCTCCCGGTTCGGTTCGGGTC---------- 28
consensus_1233#1      CGAGCAGAGGTGGVHTGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGNTCGGTTCGGGTC 60
                                            ************************* **          

consensus_1233#0      CGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGAGCGGCGCCG 88
consensus_1233#1      CGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATG-GCGGCGC-G 118
                      ******************* ****************************** ******* *

consensus_1233#0      GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTC 148
consensus_1233#1      GATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGC-TGGGCCACCGACGACCGCTCCCTC 177
                      *********************************** ************************

consensus_1233#0      GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 208
consensus_1233#1      GAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAG 237
                      ************************************************************

consensus_1233#0      ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGAC 268
consensus_1233#1      ACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCARGCCATGCGCGAC 297
                      *********************************************** ************

consensus_1233#0      GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCC 328
consensus_1233#1      GCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCC 357
                      ************************************************** *********

consensus_1233#0      CAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGA 388
consensus_1233#1      CAGTCGSGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGR 417
                      ****** **************************************************** 

consensus_1233#0      GGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGT 448
consensus_1233#1      G-CTACGGTGGCGGCGGCTACGGTGGTGGTG-CGGCGGCGGTGS-TACG-CCAGCGCCGT 473
                      * ***************************** ***********  **** *** ******

consensus_1233#0      GAAGGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGGGGTGGCGGCGGTACGGTG 508
consensus_1233#1      GAAGS-GGCTACGGCGGTGGCGGTT----------------------------------- 497
                      ****  ****** ***********                                    

consensus_1233#0      GTGGCTACCGCAGCCGGGCGGCGGAACTCCAACGGAACTGGAGGAACTGACCGGGGGGCC 568
consensus_1233#1      ------------------------------------------------------------
                                                                                  

consensus_1233#0      CTAATGGCCAGGTATCTATCTATTTATCAAGCCCCCATAACATCATTCTGTCGTATCATA 628
consensus_1233#1      ------------------------------------------------------------
                                                                                  

consensus_1233#0      ATAAGGTTGGGAGGAATATAATACTTGGGATGAATGNGAGTTGCCATAGGAGTTCTGAAC 688
consensus_1233#1      ------------------------------------------------------------
                                                                                  

consensus_1233#0      GTAGAAAAAGCTCCTTTTTTTGTCTGTTCCAACCCTAACTCCATCCCCAACACCAACTCC 748
consensus_1233#1      ------------------------------------------------------------
                                                                                  

consensus_1233#0      AGAGGGTCGCAGCCCAATACCCCT 772
consensus_1233#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)