cluster # 1235

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Oryza sativa
cluster # 1235 cluster # 1235 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1235#0 length = 749 sequences # 1

consensus_1235#1 length = 180 sequences # 1

consensusID : consensus_1235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGCGGAGCCAGGGCGGCGGCGGTGTCGCCGGCGAGTACCAGTACTACTACCATGGCGGCACCGGCGCCGGCGGCCTCGTCGACCAGGAGATGGCCGTGGCGGCGCCGGCGACGTCCGACGACGACGGAGTGGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACGGCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGCGCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTGTACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGGGAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTTAGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT]

[+] EMBL AK069877             [GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGCGGAGCCAGGGCGGCGGCGGTGTCGCCGGCGAGTACCAGTACTACTACCATGGCGGCACCGGCGCCGGCGGCCTCGTCGACCAGGAGATGGCCGTGGCGGCGCCGGCGACGTCCGACGACGACGGAGTGGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACGGCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGCGCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTGTACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGGGAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTTAGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT]




>consensus_1235#0
GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGCGGAGCCA
GGGCGGCGGCGGTGTCGCCGGCGAGTACCAGTACTACTACCATGGCGGCACCGGCGCCGG
CGGCCTCGTCGACCAGGAGATGGCCGTGGCGGCGCCGGCGACGTCCGACGACGACGGAGT
GGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTC
GCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTC
GCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACGGCGAC
GAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGCGCAGC
AGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGG
CGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTG
CGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTGTACAG
CCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGGGAAAT
AGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTTAGCAT
TTCTCCAGAAAAAATTGAAAAAAAAATAT

consensusID : consensus_1235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCCAGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCCGGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGGAGNCGGTGCTNCCCGATGGAGC]

[+] EMBL AU198160             [ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCCAGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCCGGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGGAGNCGGTGCTNCCCGATGGAGC]




>consensus_1235#1
ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCCAGGGCGGCGGNGGTGTCGCCGG
NTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCCGGCGGCCTCGTNGACCAGGAGA
TGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGGAGNCGGTGCTNCCCGATGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1235#0      GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGC-GGAGCC 59
consensus_1235#1      ----------------------ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCC 38
                                            ******************************* ******

consensus_1235#0      AGGGCGGCGGCGGTGTCGCCGGC-GAGTACCAGTACTACTACCATGGCGGCACCGGCGCC 118
consensus_1235#1      AGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCC 98
                      ********** ***********  ************************** ***** ***

consensus_1235#0      GGCGGCCTCGTCGACCAGGAGATGGCCGTGGC-GGCGCCGGCGACGTCCGACGACGACGG 177
consensus_1235#1      GGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGG 158
                      *********** ******************** ***************************

consensus_1235#0      AGT-GGTGCTCCTC-ATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCG 235
consensus_1235#1      AGNCGGTGCTNCCCGATGGAGC-------------------------------------- 180
                      **  ****** * * *******                                      

consensus_1235#0      CCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATC 295
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      CGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACG 355
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      GCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGC 415
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      GCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTAC 475
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      GGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGC 535
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      TGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTG 595
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      TACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGG 655
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      GAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTT 715
consensus_1235#1      ------------------------------------------------------------
                                                                                  

consensus_1235#0      AGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT 749
consensus_1235#1      ----------------------------------