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Oryza sativa
cluster # 12357 cluster # 12357       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12357#0 length = 1325 sequences # 7  
consensus_12357#1 length = 726 sequences # 2  
consensus_12357#2 length = 372 sequences # 1  

consensusID : consensus_12357#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1325
fasta sequence
                              [CCCAGACGCCGGCGGCTACTGCGTTTGCGATGCCCGCCGCCGCCGCCGCCGCCGCGCCGCCCAATCCCAACGTTCTGCAGCTAGCCCCACGCCTCCGAGGCCTCGTCTCCTTCCCCTCCTCATACTCCTCCTCATCGCCGTTCTCCAACCGCCTCCGCCTCCGCCTCCCCCGCGCCGCCTCCATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGA-GGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAAT-GACAAAGGCCAT-GGCCGACGCTGCTCATCCAGCATGCATAC-TGGAAACAAGGAAA-ACAGCTCCAGGTTTACGCCTCG-TTGACAAGTGGGCAGTACTAATTGGTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATATTTCTGTTGCTGGGGGCATAACAAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGGAAAAGCTTGCACTTCCTGTTGAGGTTGAGACAAGAACACTTCAGGAAGTAAAAGATTTATTGGAGTAT-GC-TGCTGAGAACAAT-ACCTCTTTAACTCGTATAATGTTGGATAATATGGTTGTCCCTCTTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGCCGTGGAGTTGATAAATGGTAG-ATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACAGTGAAG-AAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACA-TTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCTCTCCAAGTTGGAAGGCGCACAATCGCGCCTGACTCTACAGAACTAATGTAACCNTNCAAGATCTGCAGGGTTTTCTTGGCTGCTTCCATCTATCATCCATCCCTTCTCATCAACTTTAAGCTTGAGTGTACACAAGAATTTTTTCCCATATTTATGGGATATAACCACACCACATAATCACAAATAACCCTACCTGTAGCTTCCTACCGTCCT]

[+] EMBL AK068240             [CCCAGACGCCGGCGGCTACTGCGTTTGCGATGCCCGCCGCCGCCGCCGCCGCCGCGCCGCCCAATCCCAACGTTCTGCAGCTAGCCCCACGCCTCCGAGGCCTCGTCTCCTTCCCCTCCTCATACTCCTCCTCATCGCCGTTCTCCAACCGCCTCCGCCTCCGCCTCCCCCGCGCCGCCTCCATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGA GGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAAT GACAAAGGCCAT GGCCGACGCTGCTCATCCAGCATGCATAC TGGAAACAAGGAAA ACAGCTCCAGGTTTACGCCTCG TTGACAAGTGGGCAGTACTAATTGGTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATATTTCTGTTGCTGGGGGCATAACAAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGGAAAAGCTTGCACTTCCTGTTGAGGTTGAGACAAGAACACTTCAGGAAGTAAAAGATTTATTGGAGTAT GC TGCTGAGAACAAT ACCTCTTTAACTCGTATAATGTTGGATAATATGGTTGTCCCTCTTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGCCGTGGAGTTGATAAATGGTAG ATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACAGTGAAG AAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACA TTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGC                                                                                                                                                                                                                      ]
[+] EMBL CA755568             [                                                                                                                                                                                     CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGA GGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAATATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCANAGAATGAGTGGGATTGCTACNATGGAC AAGGCCATGGGCCGACGCTGCTCATCCAGGATGCATACGGGGAAAC AGGAAAGACAGCTCCGGGTTTACTCCTCGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB621481             [                                                                                                                                                                                     CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGA GGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAAT GACAAAGGCCAT GGCCGACGCTGCTCATCCAGCATGCATAC TGGAAACAAGGAAA ACAGCTCCAGGTTTACGCCTCG TTGACAAGTGGGCAGTACTAATTGGTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATATTTCTGTTGCTGGGGGCATAACAAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGG ANAGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF323701             [                                                                                                                                                                                                      GGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAAT GACAAAGGCCAT GGCCGACGCTGCTCATCCAGCATGCATAC TGGAAACAAGGAAA ACAGCTCCAGGTTTACGCCTCG TTGACAAGTGGGCAGTACTAATTGGTGGTGGGAAGAATCACAGAATTGGCTTATTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB621482             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAAT GACAAAGGCCAT GGCCGACGCTGCTCATCCAGCATGCATAC TGGAAACAAGGAAA ACAGCTCCAGGTTTACGCCTCG TTGACAAGTGGGCAGTACTAATTGGTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATATTTCTGTTGCTGGGGGCATAACAAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGGAAAAGCTTGCACTTCCTGTTGAGGTTGAGACAAGAACACTTCAGGAAGTAAAAGATTTATTGGAGTAT GC TGCTGAGAACAAT ACCTCTTTAACTCGTATAATGTTGGATAATATGGTTGTCCCTCTTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGCCGTGGAGTTGATAAATGGTAG ATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACAGTGAAG AAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACA TTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCT                                                                                                                                                                                                                     ]
[+] EMBL BM421760             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 acTATCGCTTGCTGAG ACAATGACCTCTTTAACTCGTATAATGTTGGATAATATGGTTGTCCCTCTTGGTAACGGTGATATTGATGTATC ATGCTCAAGGAT CCGTGGAGTTGATAAATGGTAGTATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACCGTGAAG AAAATTGGAGAACCGGGGGTTACCTATATTTCAAGTGGANCNTTAACACACTTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACCCTGAACTCGCTCTCCAAGTTGGAAGGCGCACAATCGCGCCTGACTCTACAGAACTAATGTAACCNTNCAAGATCTGCAGGGTTTTCTTGGCTGCTTCCATCTATCATCCATCCCTTCTCATCAACTTTAAGCTTGAGTGTACACAAGAATTTTTTCCCATATTTATGGGATATAACCACACCACATAATCACAAATAACCCTACCTGTAGCTTCCTACCGTCCT]
[-] EMBL AU225305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCTGAGAACAAT ACCTCTNTNACTCGTATAATGTTGGATAATATGGTTGTCCCTCNTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGCCGTGGAGTTGATAAATGGTAG ATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACAGTGAAGNAAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACA TTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCT                                                                                                                                                                                                                     ]


>consensus_12357#0 CCCAGACGCCGGCGGCTACTGCGTTTGCGATGCCCGCCGCCGCCGCCGCCGCCGCGCCGC CCAATCCCAACGTTCTGCAGCTAGCCCCACGCCTCCGAGGCCTCGTCTCCTTCCCCTCCT CATACTCCTCCTCATCGCCGTTCTCCAACCGCCTCCGCCTCCGCCTCCCCCGCGCCGCCT CCATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCA AGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCT TGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTG TTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGG TTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTAT ATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAA TGAGTGGAATTGCTACAATGACAAAGGCCATGGCCGACGCTGCTCATCCAGCATGCATAC TGGAAACAAGGAAAACAGCTCCAGGTTTACGCCTCGTTGACAAGTGGGCAGTACTAATTG GTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATA TTTCTGTTGCTGGGGGCATAACAAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGG AAAAGCTTGCACTTCCTGTTGAGGTTGAGACAAGAACACTTCAGGAAGTAAAAGATTTAT TGGAGTATGCTGCTGAGAACAATACCTCTTTAACTCGTATAATGTTGGATAATATGGTTG TCCCTCTTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGCCGTGGAGTTGATAA ATGGTAGATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACACAGTGAAGAAAATTG GAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACATTCTGTAAAGGCACTTG ATATATCTCTTAAGATAGACACTGAACTCGCTCTCCAAGTTGGAAGGCGCACAATCGCGC CTGACTCTACAGAACTAATGTAACCNTNCAAGATCTGCAGGGTTTTCTTGGCTGCTTCCA TCTATCATCCATCCCTTCTCATCAACTTTAAGCTTGAGTGTACACAAGAATTTTTTCCCA TATTTATGGGATATAACCACACCACATAATCACAAATAACCCTACCTGTAGCTTCCTACC GTCCT



consensusID : consensus_12357#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 726
fasta sequence
                              [CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAATGACAAAGGTGATTGGTGACCTTAGTTGATAGCTAAGATGTTCGTCTTTTTCGCAGATGAAGTGAAACATAGGCAACTGTTTATGGACTTTGGACATGTTTCACTATTCAAACAGCCACTCTAGTTACTCCTTACATATTTTCCTGATAGGTACATGCATACCACTTTCCAGATTTGATGATAATCAGCCAAGGCTGATTCTCCCGATCTGATTTTTCAGTAAACCACTTTGATGTCTTGCTTTTCCCAGATCAAGTATGATTAAACCTGGTGGGCTGTGTACATATGATTTGGATGTAAAAGCTGGGGTTTAATCTATGTTCTAAAAATTAATATAATTATACCCTAT]

[+] EMBL CB619215             [CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAATGACAAAGGTGATTGGTGACCTTAGTTGATAGCTAAGATGTTCGTCTTTTTCGCAGATGAAGTGAAACATAGGCAACTGTTTATGGACTTTGGACATGTTTCACTATTCAAACAGCCACTCTAGTTACTCCTTACATATTTTCCTGATAGGTACATGCATACCACTTTCCAGATTTGATGATAATCAGCCAAGGCTGATTCTCCCGATCTGATTTTTCAGTAAACCACTTTGATGTCTTGCTTTTCCCAGATCAAGTATGATTAAACCTGGTGGGCTGTGTACATATGATTTGGATGTAAAAGCTGGGGTTTAATCTATGTTCTAAAAATTAATATAATTATACCCTAT]
[+] EMBL CB619213             [CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAAGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTTGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTGTTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGTTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAATGAGTGGAATTGCTACAATGACAAAGGTGATTGGTGACCTTAGTTGATAGCTAAGATGTTCGTCTTTTTCGCAGATGAAGTGAAACATAGGCAACTGTTTATGGACTTTGGACATGTTTCACTATTCAAACAGCCACTCTAGTTACTCCTTACATATTTTCCTGATAGGTACATGCATACCACTTTCCAGATTTGATGATAATCAGCCAAGGCTGATTCTCCCGATCTGATTTTTCAGTAAACCACTTTGATGTCTTGCTTTTCCCAGATCAAGTATGATTAAACCTGGTGGGCTGTGTACATATGATTTGGATGTAAAAGCTGGGtt                                       ]


>consensus_12357#1 CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCAA GGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCTT GGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTGT TGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGGT TGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTATA TGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAATTTCATGCAAAGAAT GAGTGGAATTGCTACAATGACAAAGGTGATTGGTGACCTTAGTTGATAGCTAAGATGTTC GTCTTTTTCGCAGATGAAGTGAAACATAGGCAACTGTTTATGGACTTTGGACATGTTTCA CTATTCAAACAGCCACTCTAGTTACTCCTTACATATTTTCCTGATAGGTACATGCATACC ACTTTCCAGATTTGATGATAATCAGCCAAGGCTGATTCTCCCGATCTGATTTTTCAGTAA ACCACTTTGATGTCTTGCTTTTCCCAGATCAAGTATGATTAAACCTGGTGGGCTGTGTAC ATATGATTTGGATGTAAAAGCTGGGGTTTAATCTATGTTCTAAAAATTAATATAATTATA CCCTAT



consensusID : consensus_12357#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence
                              [CATTTCCTGCAGTGTTATTTACATAACATGGGTGGGGGAAGTGACAATTTACTTTTATTGATCCTTATAATCTGATGATGTCTTGAACTGTTGTTATTATTCTATATTGCTTATTTATACTCATTATTAACTTGGGGAATTTAGGGTAAATATGATGTAACGGTAGACTGCAGGGCTTATTGCATAGTGAATTCCCTTGTTTAACTGACGAATTACAATGAAATGTGACTGTTGCTTCAGGCATCTGGAAATGTGACTATTGACACAGTGAAGAAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACATTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCT]

[-] EMBL CB619214             [CATTTCCTGCAGTGTTATTTACATAACATGGGTGGGGGAAGTGACAATTTACTTTTATTGATCCTTATAATCTGATGATGTCTTGAACTGTTGTTATTATTCTATATTGCTTATTTATACTCATTATTAACTTGGGGAATTTAGGGTAAATATGATGTAACGGTAGACTGCAGGGCTTATTGCATAGTGAATTCCCTTGTTTAACTGACGAATTACAATGAAATGTGACTGTTGCTTCAGGCATCTGGAAATGTGACTATTGACACAGTGAAGAAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACATTCTGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCT]


>consensus_12357#2 CATTTCCTGCAGTGTTATTTACATAACATGGGTGGGGGAAGTGACAATTTACTTTTATTG ATCCTTATAATCTGATGATGTCTTGAACTGTTGTTATTATTCTATATTGCTTATTTATAC TCATTATTAACTTGGGGAATTTAGGGTAAATATGATGTAACGGTAGACTGCAGGGCTTAT TGCATAGTGAATTCCCTTGTTTAACTGACGAATTACAATGAAATGTGACTGTTGCTTCAG GCATCTGGAAATGTGACTATTGACACAGTGAAGAAAATTGGAGAAACGGGGGTTACCTAT ATTTCAAGTGGAGCATTAACACATTCTGTAAAGGCACTTGATATATCTCTTAAGATAGAC ACTGAACTCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12357#0      CCCAGACGCCGGCGGCTACTGCGTTTGCGATGCCCGCCGCCGCCGCCGCCGCCGCGCCGC 60
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      CCAATCCCAACGTTCTGCAGCTAGCCCCACGCCTCCGAGGCCTCGTCTCCTTCCCCTCCT 120
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      CATACTCCTCCTCATCGCCGTTCTCCAACCGCCTCCGCCTCCGCCTCCCCCGCGCCGCCT 180
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      CCATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCA 240
consensus_12357#1      -CATGTCCGCCGAGGCGCGGGTGCCCGTGGCGCCGCCGGCCCACCCCACCTACGACCTCA 59
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      AGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCT 300
consensus_12357#1      AGGCCGTCATCAACCTCGCCCTATCCGAGGACGCCGGCGACCGAGGGGATGTATCTTGCT 119
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      TGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTG 360
consensus_12357#1      TGGCAACCATACCTTCTGACGTGAAAGCTGAAGCCACCTTTATTGCAAAGGAGGATGGTG 179
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      TTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGG 420
consensus_12357#1      TTGTCGCTGGAATAAGCCTAGCAGATATGATATTTAAGCAAGTTGATCCATCATTGAAGG 239
consensus_12357#2      ------------------------------CATTT---CCTGCAGTGTTATTTACATAAC 27
                                                      ****   *  *  *    **      *  

consensus_12357#0      TTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTAT 480
consensus_12357#1      TTGAATGGTTTGAAAGTGATGGAAATTATGTCCATAAGGGATTGCAATTTGGGAGAGTAT 299
consensus_12357#2      ATGGGTGGG--GGAAGTGAC--AATTTACTTTTATTGATCCTTATAATCTGATGATGTCT 83
                        **  ***   * ******   ** ***  *  **      **  *** **     ** *

consensus_12357#0      ATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAAT-TTCATGCAAAGA 539
consensus_12357#1      ATGGTTGTGCTCGCAACATTATTGTTGCTGAAAGAGTTGTGCTCAAT-TTCATGCAAAGA 358
consensus_12357#2      TGAACTGTTGTTATTATTCTAT-ATTGCTTAT----TTATACTCATTATTAACTTGGGGA 138
                            ***  *    *   ***  ***** *     ** * **** * ** *      **

consensus_12357#0      ATGAGTGGAATTGCTACAATGACAAAGGCCATGGCCGACGCTGCTC---ATCCAGCATG- 595
consensus_12357#1      ATGAGTGGAATTGCTACAATGACAAAGGTGATTGGTGACCTTAGTTGATAGCTAAGATGT 418
consensus_12357#2      ATT--TAGGGTAAATATGATGTAACGGTAGACTGCAGGGCTTATTGCATAGTGAATTCCC 196
                       **   * *  *   **  ***  *  *   *  *  *    *  *    *   *      

consensus_12357#0      -CATACTGGAAACAAGGAA-AACAGCTCCAGGTTTACGCCTCGTTGACAAGTGGGCAGTA 653
consensus_12357#1      TCGTCTTTTTCGCAGATGA-AGTGAAACATAGGCAACTGTTTATGGACTT-TGGACA--- 473
consensus_12357#2      TTGTTTAACTGACGAATTACAATGAAATGTGACTGTTGCTTCAGGCATCTGGAAATGTGA 256
                          *        *     * *                   *     *             

consensus_12357#0      CTAATT-GGTGGTGGAAAGAATCACAGAATTGGCTTATTTGATATGGTTATGATAAAGGA 712
consensus_12357#1      -TGTTT-CACTATTCAAACAGCCACTCTAGTTACTCCTTACATATTTTCCTGATAG-GTA 530
consensus_12357#2      CTATTGACACAGTGAAGAAAATTGGAGAAACGGGG-GTTACCTATATTTCAAGTGGAGCA 315
                        *  *       *  * * *        *        **   ***  *     *   * *

consensus_12357#0      TAATCATATTTCTGTT--GCTGGGGGCATAA-CAAATGCAATGAAATTTGTTGATCGATT 769
consensus_12357#1      CATGCATACCACTTTCCAGATTTGATGATAATCAGCCAAGGCTGATTCTCCCGATCTGAT 590
consensus_12357#2      TTAACACATTCTGTAAAGGCACTTGATATAT-CTCTTAAGATAGACACTG--AACTCGCT 372
                           ** *          *        ***  *           *   *    *     *

consensus_12357#0      CTTGGCGAAGGAAAAGCTTGCACTTCCTGTTGAGGTTGAGACAAGAACACTTCAGGAAGT 829
consensus_12357#1      TTT--TCAGTAAACCACTTTGATGTCTTGCTTTTCCCAGATCAAGTATGATT---AAACC 645
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      AAAAGATTTATTGGAGTATGCTGCTGAGAACAATACCTC---TTTAACTCGTATAATGTT 886
consensus_12357#1      TGGTGGGCTGTGTACATATGAT-TTGGATGTAAAAGCTGGGGTTTAATCTATGTTCTAAA 704
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      GGATAATATGGTTGTCCCTCTTGGTAACGGTGATATTGATGTATCAATGCTCAAGGATGC 946
consensus_12357#1      AATTAATATAATTATACCCTAT-------------------------------------- 726
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      CGTGGAGTTGATAAATGGTAGATTTGAGACTGAGGCATCTGGAAATGTGACTATTGACAC 1006
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      AGTGAAGAAAATTGGAGAAACGGGGGTTACCTATATTTCAAGTGGAGCATTAACACATTC 1066
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      TGTAAAGGCACTTGATATATCTCTTAAGATAGACACTGAACTCGCTCTCCAAGTTGGAAG 1126
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      GCGCACAATCGCGCCTGACTCTACAGAACTAATGTAACCNTNCAAGATCTGCAGGGTTTT 1186
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      CTTGGCTGCTTCCATCTATCATCCATCCCTTCTCATCAACTTTAAGCTTGAGTGTACACA 1246
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      AGAATTTTTTCCCATATTTATGGGATATAACCACACCACATAATCACAAATAACCCTACC 1306
consensus_12357#1      ------------------------------------------------------------
consensus_12357#2      ------------------------------------------------------------
                                                                                   

consensus_12357#0      TGTAGCTTCCTACCGTCCT 1325
consensus_12357#1      -------------------
consensus_12357#2      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)