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Oryza sativa
cluster # 12361 cluster # 12361       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12361#0 length = 1028 sequences # 4  
consensus_12361#1 length = 810 sequences # 2  
consensus_12361#2 length = 769 sequences # 2  
consensus_12361#3 length = 676 sequences # 1  
consensus_12361#4 length = 304 sequences # 1  

consensusID : consensus_12361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1028
fasta sequence
                              [TGCTTCTCTCATTTGTTCCTTGATATATTTGCTACGTCGTCAGAGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGTAAGTTCAGCTCAGCTAAGTTCATCAACAAGCAGAACAAGGAGAGATCAATTATGTGTGTGTGAATCATTGAGTTGATCGATCGGTTCATATATATGCAGGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCCATTTGACATTA--AAAAAAAAAAAAAAAAA]

[+] EMBL AK073955             [TGCTTCTCTCATTTGTTCCTTGATATATTTGCTACGTCGTCAGAGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGTAAGTTCAGCTCAGCTAAGTTCATCAACAAGCAGAACAAGGAGAGATCAATTATGTGTGTGTGAATCATTGAGTTGATCGATCGGTTCATATATATGCAGGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCCATT                           ]
[+] EMBL AU057779             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTNTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCNGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGNCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGNTAGTNCTCATGTATAAGAGGCTTACCCATTTGACATTA  AAAAAAAAAAAA     ]
[+] EMBL AU057891             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCCATTTGACATTATTAAAAAAAAAAAAAAAAA]
[+] EMBL AK058260             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCC                              ]


>consensus_12361#0 TGCTTCTCTCATTTGTTCCTTGATATATTTGCTACGTCGTCAGAGAACTCGTGCAGATAG CTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGC CGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCA TGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACG CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA ACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGG AGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGTAAGTTCAGCTC AGCTAAGTTCATCAACAAGCAGAACAAGGAGAGATCAATTATGTGTGTGTGAATCATTGA GTTGATCGATCGGTTCATATATATGCAGGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGT GGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGC GACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCG CGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCC ATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCG GTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAA TTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACA GACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCC TGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCCATTTGACATTAAAAAAAAAA AAAAAAAA



consensusID : consensus_12361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence
                              [CTTTTTTTTTTGCCAGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCNCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTNCGACAGTGTGAGTGTNCCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTNCCCATTTGACATTATTAAAATGTTGGTGCTGTTACGTATTGTCGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU173969             [CTTTTTTTTTTGCCAGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTC                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU057126             [                                                                                                                                                                                                                                                                                                                                                                                                       ancCCCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCNCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTNCGACAGTGTGAGTGTNCCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTNCCCATTTGACATTATTAAAATGTTGGTGCTGTTACGTATTGTCGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12361#1 CTTTTTTTTTTGCCAGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGAC GCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAG AACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGG GAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAG AGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCG GCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGGTGAAGGCCGA GGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCAAGAAGTTGCTCTTCGGTTGA ATCTCTTCTCGGTCATCNCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGT NCGACAGTGTGAGTGTNCCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTC AGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAA GGGAACATTTATTATGTACAGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGA AATTGTAACATTTTTGTGCCTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTNCCC ATTTGACATTATTAAAATGTTGGTGCTGTTACGTATTGTCGTGTTTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12361#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence
                              [CAGAGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGT]

[+] EMBL CB667351             [CAGAGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCA                                             ]
[-] EMBL CB667352             [   AGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTT GAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGT]


>consensus_12361#2 CAGAGAACTCGTGCAGATAGCTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCC GCCGGCGCCGGCGCCGGAGCCGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGC GCCGGAGGAGTCGAAGGCCATGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGG TGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCT GATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTT GGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAA GTACCAAGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGTGGAGAAGTTGATGAACGGCGT GGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGA GGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAA GAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGT CGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACCGGTGTCAAGTTCAGATAGCTAG TGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTAATTTCATGTACAGGGCAGCTAT TGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTACAGACATGATGT



consensusID : consensus_12361#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence
                              [GCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTGCCAAGGCTGAGTTATTTTCTTCAACTTTGAACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTTTATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAGCCCTCGGTTAACTGAAACTTTCGCGCACAGGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGACAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTNAATGTGTGT]

[+] EMBL AU162738             [GCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTGCCAAGGCTGAGTTATTTTCTTCAACTTTGAACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTTTATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAGCCCTCGGTTAACTGAAACTTTCGCGCACAGGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGCGGACAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTNAATGTGTGT]


>consensus_12361#3 GCTGCAGCAACAGGTGGCTCACACGAAAGAGACGCTCTCCTGACGACGGTCGCCACGGAG AAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAG TCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTGCCAAGGCTGAGTTATTTTCTTCA ACTTTGAACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTT ATAAAAACATTTTATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGC ATTCCAAATGAGCCCTCGGTTAACTGAAACTTTCGCGCACAGGGCGGCCAAGAAGTTGGC CGACATCGCCTCATGGGAGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTA CCAAGAGTACCTGGAGAGGAAGAAGGCGGACAGGTGGAGAAGTTGATGAACGGCGTGGCG AAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAG GTGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAG TTGCTCTTTCGGTTGAATCTCTTCTCGGTCATCTCCATTGATCGTCGTCGTCGTCGTCGT TGTTGTNAATGTGTGT



consensusID : consensus_12361#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence
                              [CTTTCTACGTGTTCATCAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTNCCAAGGCTGAGTTATTTTCTTCAACTTTGAACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTTTATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAGCCCT]

[+] EMBL OSS0710A             [CTTTCTACGTGTTCATCAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTCTTNCCAAGGCTGAGTTATTTTCTTCAACTTTGAACCGTGCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTTTATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAGCCCT]


>consensus_12361#4 CTTTCTACGTGTTCATCAGACGCTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCG CTGATCAAGGCGTGGGAGGAGAACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTA ATAGTAGCTCTTCTCTCACTTCTTNCCAAGGCTGAGTTATTTTCTTCAACTTTGAACCGT GCTCGCTTTTCATTAGCACGTTTTTTAAACTATTAAATAATGTGCTTTATAAAAACATTT TATATAGAAAATAAATTCAAACTAGGTCGAAAGATATAAAATTCCTGCATTCCAAATGAG CCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12361#0      TGCTTCTCTCATTTGTTCCTTGATATATTTGCTACGTCGTCAGAGAACTCGTGCAGATAG 60
consensus_12361#2      ----------------------------------------CAGAGAACTCGTGCAGATAG 20
consensus_12361#1      ------------------------------------------------------------
consensus_12361#3      ------------------------------------------------------------
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      CTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGC 120
consensus_12361#2      CTTCTTTGGCTGAGTTGTTGGAGATGGCGGAGGTGGCGCCGCCGGCGCCGGCGCCGGAGC 80
consensus_12361#1      ------------------------------------------------------------
consensus_12361#3      ------------------------------------------------------------
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      CGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCA 180
consensus_12361#2      CGACCAAGGACATCGCCGAGGAGAGGGCCGCCGTGCCGGCGCCGGAGGAGTCGAAGGCCA 140
consensus_12361#1      ---------------------------------------------------------CTT 3
consensus_12361#3      ------------------------------------------------------------
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      TGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACG 240
consensus_12361#2      TGACCGTCGTCGATGATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACG 200
consensus_12361#1      TTTTTTTTGCCA--GATGCTGAGAAAGCTGCAGCAACAGGTGGCTCACACGAAAGAGACG 61
consensus_12361#3      --------------------------GCTGCAGCAACAGGTGGCTCACACGAAAGAGACG 34
consensus_12361#4      --------------------------------------CTTTCTACGTGTTCATCAGACG 22
                                                               *    *      *  *****

consensus_12361#0      CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA 300
consensus_12361#2      CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA 260
consensus_12361#1      CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA 121
consensus_12361#3      CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA 94
consensus_12361#4      CTCTCCTGACGACGGTCGCCACGGAGAAGAGGATATCGCTGATCAAGGCGTGGGAGGAGA 82
                       ************************************************************

consensus_12361#0      ACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGG 360
consensus_12361#2      ACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGG 320
consensus_12361#1      ACGAAAAGGCCAAGGCCGACAACAAGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGG 181
consensus_12361#3      ACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTC 154
consensus_12361#4      ACGAAAAGGCCAAGGCCGACAACAAGTCAGTAATACTAATAGTAGCTCTTCTCTCACTTC 142
                       ************************** * *  *      * *  *   *   ****    

consensus_12361#0      AGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGTAAGTTCAGCTC 420
consensus_12361#2      AGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAG------------ 368
consensus_12361#1      AGAACTCCAAGGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAG------------ 229
consensus_12361#3      T---TGCCAAGGCTGA-GTTATTTTCTTCAACTTTGAACCGTGCTC-------------- 196
consensus_12361#4      T---TNCCAAGGCTGA-GTTATTTTCTTCAACTTTGAACCGTGCTC-------------- 184
                             ******  *  *  **      * *  ** *   ** *                

consensus_12361#0      AGCTAAGTTCATCAACAAGCAGAACAAGGAGAGATCAATTATGTGTGTGTGAATCATTGA 480
consensus_12361#2      ------------------------------------------------------------
consensus_12361#1      ------------------------------------------------------------
consensus_12361#3      ------------------------------------------------------------
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      GTTGATCGATCGGTTCATATATATGCAGGAGTACCTGGAGAGGAAGAAGGCGGAGCAGGT 540
consensus_12361#2      -----------------------------AGTACCTGGAGAGGAAGAAGGCGGAGCAGGT 399
consensus_12361#1      -----------------------------AGTACCTGGAGAGGAAGAAGGCGGAGCAGGT 260
consensus_12361#3      ------------------------------GCTTTTCATTAGCACGTTTTTTAAACTATT 226
consensus_12361#4      ------------------------------GCTTTTCATTAGCACGTTTTTTAAACTATT 214
                                                     *    *    ** * *       * *   *

consensus_12361#0      GGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGC 600
consensus_12361#2      GGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGC 459
consensus_12361#1      GGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAGCGAGCGGC 320
consensus_12361#3      AAA-----TAATGTGCTTTATAAAAACATTTTATATAG----------AAAATAAATTCA 271
consensus_12361#4      AAA-----TAATGTGCTTTATAAAAACATTTTATATAG----------AAAATAAATTCA 259
                         *     * ***  *    *    *   *  * *  *           **   *     

consensus_12361#0      GACGGAGGCGCGGCGAGGGGAGGAGGTGG-TGAAGGCCGAGGAGGCCGCAGCAAAGTACC 659
consensus_12361#2      GACGGAGGCGCGGCGAGGGGAGGAGGTGG-TGAAGGCCGAGGAGGCCGCAGCAAAGTACC 518
consensus_12361#1      GACGGAGGCGCGGCGAGGGGAGGAGGTGGGTGAAGGCCGAGGAGGCCGCAGCAAAGTACC 380
consensus_12361#3      AACTAGGTCG----AAAGATATAAAATTCCTGCATTCCAAATGAGCCCTCGGTTAACTGA 327
consensus_12361#4      AACTAGGTCG----AAAGATATAAAATTCCTGCATTCCAAATGAGCCCT----------- 304
                        **   * **     * *  *  *  *   ** *  ** *    ***             

consensus_12361#0      GCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTC 719
consensus_12361#2      GCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCTC 578
consensus_12361#1      GCGCCAAGGGAGAGCCGCC-AAGAAGTTGCTCTTCGGTTGAATCTCTTCTCGGTCATCNC 439
consensus_12361#3      AACTTTCGCGCACAGGGCGGCCAAGAAGTTGGCCGACATCGCCTCATGGGAGAACTCCAA 387
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      CATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACC 779
consensus_12361#2      CATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTGCGACAGTGTGAGTGTACC 638
consensus_12361#1      CATTGATCGTCGTCGTCGTCGTCGTTGTTGTAAATGTGTGTNCGACAGTGTGAGTGTNCC 499
consensus_12361#3      GGTGGCCGAGATCGAGGCCGAGATTAAGAAGTACCAAGAGTACCTGGAGAGGAAGAAGGC 447
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      GGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTA 839
consensus_12361#2      GGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTA 698
consensus_12361#1      GGTGTCAAGTTCAGATAGCTAGTGGTTGGATGTATTTTCTCAGTTGTTTGTTTTCGTTTA 559
consensus_12361#3      GGACAGGTGGAGAAGTTGATGAACGGCGTGGCGAAGGTGCACAGGGCGGCGGAGGAGAAG 507
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      ATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTAC 899
consensus_12361#2      ATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTAC 758
consensus_12361#1      ATTTCATGTACAGGGCAGCTATTGCAGTCTCATGTGAAAAAGGGAACATTTATTATGTAC 619
consensus_12361#3      CGAGCGGCGACGGAGGCGCGGCGAGGGGAGGAGGTGGTGAAGGCCGAGGAGGCCGCAGCA 567
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      AGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGC 959
consensus_12361#2      AGACATGATGT------------------------------------------------- 769
consensus_12361#1      AGACATGATGTTTTGGGGTCTTTATTCGGATTCGGCGGTGAAATTGTAACATTTTTGTGC 679
consensus_12361#3      AAGTACCGCGCCAAGGGAGAGCCGCCCAAGAAGTTGCTCTTTCGGTTGAATCTCTTCTCG 627
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      CTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTACCCATTTGACATTAAAAAAAAA 1019
consensus_12361#2      ------------------------------------------------------------
consensus_12361#1      CTGTGGTACTTGGCTAGTACTCATGTATAAGAGGCTTNCCCATTTGACATTATTAAAATG 739
consensus_12361#3      GTCATCTCCATTGATCGTCGTCGTCGTCGTCGTTGTTGTNAATGTGTGT----------- 676
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      AAAAAAAAA--------------------------------------------------- 1028
consensus_12361#2      ------------------------------------------------------------
consensus_12361#1      TTGGTGCTGTTACGTATTGTCGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 799
consensus_12361#3      ------------------------------------------------------------
consensus_12361#4      ------------------------------------------------------------
                                                                                   

consensus_12361#0      -----------
consensus_12361#2      -----------
consensus_12361#1      AAAAAAAAAAA 810
consensus_12361#3      -----------
consensus_12361#4      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)