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Oryza sativa
cluster # 12364 cluster # 12364       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12364#0 length = 1541 sequences # 7  
consensus_12364#1 length = 683 sequences # 2  
consensus_12364#2 length = 568 sequences # 1  

consensusID : consensus_12364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1541
fasta sequence
                              [AAATCTCCCGTCTCGGCGTCTCGGCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGCGAGGGGAGGGCGCGCCGATCTCCATCCGGCGAGCAGGGGAGGGGAGGGTCGCTGATCTCCATCTGGCGAGTAGAGCAGGCGAGGGGAGGGGAGGGGATCCGATCGATGATTCCACAAAATGCAGCTTTGGACCATATAAGCACACCTTCAGAAAGTGGTGAAATACCTTTGGTTATAAATGTTGAAAGTCAGCACATTTTTTGACGATTCTATGGCATGGAAGGGGATACTTTGTTAGCTGACATACAACTGGCACTTCCAAATAGGTGCTATTTGTTACCTTCAGGCATGCACAAATCTAATACATCATCATGTCCTACTATCACATGTGAAGAAGCTCTTAAGAGGGAGTTGGAGTATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTG-CCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTC-AAACCAA-CGGAACAATTGGAAATCCTCA-CAAGGAAATGTCATCTGATGGTGATGGAATAAGCA-ATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACA-GGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACA-CTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAATGTACCTTTGATAAAAAT]

[+] EMBL AK103827             [AAATCTCCCGTCTCGGCGTCTCGGCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGCGAGGGGAGGGCGCGCCGATCTCCATCCGGCGAGCAGGGGAGGGGAGGGTCGCTGATCTCCATCTGGCGAGTAGAGCAGGCGAGGGGAGGGGAGGGGATCCGATCGATGATTCCACAAAATGCAGCTTTGGACCATATAAGCACACCTTCAGAAAGTGGTGAAATACCTTTGGTTATAAATGTTGAAAGTCAGCACATTTTTTGACGATTCTATGGCATGGAAGGGGATACTTTGTTAGCTGACATACAACTGGCACTTCCAAATAGGTGCTATTTGTTACCTTCAGGCATGCACAAATCTAATACATCATCATGTCCTACTATCACATGTGAAGAAGCTCTTAAGAGGGAGTTGGAGTATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTG CCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTC AAACCAA CGGAACAATTGGAAATCCTCA CAAGGAAATGTCATCTGATGGTGATGGAATAAGCA ATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACATTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACA GGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACA CTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAATGTAC             ]
[+] EMBL CB648506             [                  TCTCGGCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGCGAGGGGAGGGCGCGCCGATCTCCATCCGGCGAGCAGGGGAGGGGAGGGTCGCTGATCTCCATCTGGCGAGTAGAGCAGGCGAGGGGAGGGGAGGGGATCCGATCGATGATTCCACAAAATGCAGCTTTGGACCATATAAGCACACCTTCAGAAAGTGGTGAAATACCTTTGGTTATAAATGTTGAAAGTCAGCACATTTTTTGACGATTCTATGGCATGGAAGGGGATACTTTGTTAGCTGACATACAACTGGCACTTCCAAATAGGTGCTATTTGTTACCTTCAGGCATGCACAAATCTAATACATCATCATGTCCTACTATCACATGTGAAGAAGCTCTTAAGAGGGAGTTGGAGTATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAACGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA753137             [                                                                                                                                                                                                                                                                                                                                                                                                                                    ATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTG CCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTNTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTC AAA CAA CGGGACAATTGGAAATCCTCA CAAGGGAAACTCCTCTGATGGTGATGGAATAAGC  ATAGCAAACTATAGCANNA TGCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB648507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTG CCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTC AAACCAA CGGAACAATTGGAAATCCTCA CAAGGAAATGTCATCTGATGGTGATGGAATAAGCA ATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACA GGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACA CTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAAT                 ]
[+] EMBL AU056276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAG AACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTC AAACCAA CGGAACAATTGGAAATCCTCA CAAGGAAATGTCATCTGATGGTGATGGAATAAGCA ATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACA GGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACA CTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAATGTACCTTTGATAAAAA ]
[+] EMBL BI810190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTGGAAGTCAAAACCAACCGGACCCATTGGAAATCCTCACCAAGGAAATCTCATCTGATGGTGATGGAATAA CACATA C AACTAGA C AAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAAC AACTTGGCTGGAACCCAACACGGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACACCTAGTTGTCTTATTTTTTGTTGC AATCATGTAGAAAT AAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAAaaa               ]
[+] EMBL CA764799             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CA ATAGCAAACTAGAGCAAAATTGCTGATACTGGATCCTCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACA GGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACA CTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAAT AAAAAAAATCCTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTATTGCAATGTACCTTTGATAtttgt]


>consensus_12364#0 AAATCTCCCGTCTCGGCGTCTCGGCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAG GCGAGGGGAGGGCGCGCCGATCTCCATCCGGCGAGCAGGGGAGGGGAGGGTCGCTGATCT CCATCTGGCGAGTAGAGCAGGCGAGGGGAGGGGAGGGGATCCGATCGATGATTCCACAAA ATGCAGCTTTGGACCATATAAGCACACCTTCAGAAAGTGGTGAAATACCTTTGGTTATAA ATGTTGAAAGTCAGCACATTTTTTGACGATTCTATGGCATGGAAGGGGATACTTTGTTAG CTGACATACAACTGGCACTTCCAAATAGGTGCTATTTGTTACCTTCAGGCATGCACAAAT CTAATACATCATCATGTCCTACTATCACATGTGAAGAAGCTCTTAAGAGGGAGTTGGAGT ATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTG CATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCC ATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCAC CAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTT TGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATT GTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGC TGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTA ATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATG TGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTCAAACCAACG GAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCA AACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTT GAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCAT GTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAAC GGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTG GAACCAAACAGGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACACTAGTTGTCTT ATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATCTT GCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGGTT ATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGT TCAAATATCATAATTTATTGCAATGTACCTTTGATAAAAAT



consensusID : consensus_12364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence
                              [GAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCNTCTGGAAGTCAAACCAACGGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTAT]

[+] EMBL CF311255             [GAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAGGTTGGCCTTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCNTCTGGAAGTCAAACCAACGGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCAAACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTAT]
[+] EMBL CF310651             [                                             TTAATGGATCCCCTGCATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCCATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCACCAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTTTGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_12364#1 GAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAGGTTGGCCTTAATGGATCCCCTG CATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCC ATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCAC CAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTT TGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATT GTGTTACAGAATTTAATTTTGGTGCCCATATTGGGAAAAAAACACAAGGCAAAAAAGCTG GAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTAAT AGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTG TTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCNTCTGGAAGTCAAACCAACGG AACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCAA ACTAGAGCAAAATTGCTGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTG AAGCTTATGGTTGAACCGGTTAT



consensusID : consensus_12364#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [GTAAGGTGGATTCTGTAACACAATCCACCTTACAAATTTTGCACCAAAAGGAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTCAAACCAACGGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCAAACTAGAGCAAAATTGCTGGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGC]

[+] EMBL AU056275             [GTAAGGTGGATTCTGTAACACAATCCACCTTACAAATTTTGCACCAAAAGGAAGGTGGATTGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGCTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTAATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATGTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTCAAACCAACGGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGCAAACTAGAGCAAAATTGCTGGATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAAACGGGAGGTACTGCAGCTGAACTGTGGC]


>consensus_12364#2 GTAAGGTGGATTCTGTAACACAATCCACCTTACAAATTTTGCACCAAAAGGAAGGTGGAT TGTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAG CTGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGT AATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAAT GTGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCTCTGGAAGTCAAACCAAC GGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGC AAACTAGAGCAAAATTGCTGGATACTGGATCATCTGAACACAAGTGATGAATAAAGATAC TTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCC ATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAA ACGGGAGGTACTGCAGCTGAACTGTGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12364#0      AAATCTCCCGTCTCGGCGTCTCGGCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAG 60
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      GCGAGGGGAGGGCGCGCCGATCTCCATCCGGCGAGCAGGGGAGGGGAGGGTCGCTGATCT 120
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      CCATCTGGCGAGTAGAGCAGGCGAGGGGAGGGGAGGGGATCCGATCGATGATTCCACAAA 180
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      ATGCAGCTTTGGACCATATAAGCACACCTTCAGAAAGTGGTGAAATACCTTTGGTTATAA 240
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      ATGTTGAAAGTCAGCACATTTTTTGACGATTCTATGGCATGGAAGGGGATACTTTGTTAG 300
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      CTGACATACAACTGGCACTTCCAAATAGGTGCTATTTGTTACCTTCAGGCATGCACAAAT 360
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      CTAATACATCATCATGTCCTACTATCACATGTGAAGAAGCTCTTAAGAGGGAGTTGGAGT 420
consensus_12364#1      ----------------------------------------------------------GA 2
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      ATCGGCAAAAAATTGAAAGGAGTCATCCACATCTGCTGGTTGGCCTTAATGGATCCCCTG 480
consensus_12364#1      ATTCCCTTGGACCTGACTGGACTGAA--GGAGTAGAAGGTTGGCCTTAATGGATCCCCTG 60
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      CATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCC 540
consensus_12364#1      CATTGCTGAATGAGGTTGGATCTGGTTCATCACCTGATTTGTCAATGAGGAACTCAGCCC 120
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      ATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCAC 600
consensus_12364#1      ATGACAGCTATATGCCCTCACCACAGGCATGTTTTGTTGGTTCCACTGTACAAAGACCAC 180
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      CAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTT 660
consensus_12364#1      CAGCAAATTGGTACCCCTCAAAGAAAAAGTTGAAAGTTCTACAGCATCCTTCACAGGCTT 240
consensus_12364#2      --------------------------------------------------------GTAA 4
                                                                               *   

consensus_12364#0      TGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATT 720
consensus_12364#1      TGCAGGCCCCCAGGCCAAATTTGATACCTTCCTTTTGGTGCAAAATTTGTAAGGTGGATT 300
consensus_12364#2      GGTGGATTCTGTAACACAATCC---ACCTTACAAATTTTGCACCAAAAGGAAGGTGGATT 61
                        *  *   *     *  ***     ***** *   *  ****  *   * **********

consensus_12364#0      GTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGC 780
consensus_12364#1      GTGTTACAGAATTTAATTTTGGTGCCCATATTGG--GAAAAAAACACAAGGCAAAAAAGC 358
consensus_12364#2      GTGTTACAGAATTTAATTTTGGTGCCCATATTGGAGGAAAAAAACACAAGGCAAAAAAGC 121
                       **********************************  ************************

consensus_12364#0      TGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTA 840
consensus_12364#1      TGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTA 418
consensus_12364#2      TGGAGATTCTTGGTAATAGAAACAATGCAAGACCTGCCACTGGCAATCAATGTACAGGTA 181
                       ************************************************************

consensus_12364#0      ATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATG 900
consensus_12364#1      ATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATG 478
consensus_12364#2      ATAGAAATCCCAGACCAAATGGCAACGCAGGTTCTGGAAGCAGAAACAATGAACCAAATG 241
                       ************************************************************

consensus_12364#0      TGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCT-CTGGAAGTCAAACCAAC 959
consensus_12364#1      TGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCNTCTGGAAGTCAAACCAAC 538
consensus_12364#2      TGTTTAATAGCAATATTGCCCAACCAAGCAGTGACACTTTCT-CTGGAAGTCAAACCAAC 300
                       *****************************************  *****************

consensus_12364#0      GGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGC 1019
consensus_12364#1      GGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGC 598
consensus_12364#2      GGAACAATTGGAAATCCTCACAAGGAAATGTCATCTGATGGTGATGGAATAAGCAATAGC 360
                       ************************************************************

consensus_12364#0      AAACTAGAGCAAAATTGCTG-ATACTGGATCATCTGAACACAAGTGATGAATAAAGATAC 1078
consensus_12364#1      AAACTAGAGCAAAATTGCTG-ATACTGGATCATCTGAACACAAGTGATGAATAAAGATAC 657
consensus_12364#2      AAACTAGAGCAAAATTGCTGGATACTGGATCATCTGAACACAAGTGATGAATAAAGATAC 420
                       ******************** ***************************************

consensus_12364#0      TTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCC 1138
consensus_12364#1      TTGAAGCTTATGGTTGAACCGGTTAT---------------------------------- 683
consensus_12364#2      TTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGAACATCTTCCCAGTTGTCCCC 480
                       **************************                                  

consensus_12364#0      ATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAA 1198
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAA 540
                                                                                   

consensus_12364#0      ACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGC 1258
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ACGGGAGGTACTGCAGCTGAACTGTGGC-------------------------------- 568
                                                                                   

consensus_12364#0      TGGAACCAAACAGGTCTTTAACCTGCTGATGTACATAGTTTTCTCTTTACACTAGTTGTC 1318
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      TTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATCCTTGCTTGGATGATGGTATC 1378
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      TTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGG 1438
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      TTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATA 1498
consensus_12364#1      ------------------------------------------------------------
consensus_12364#2      ------------------------------------------------------------
                                                                                   

consensus_12364#0      GTTCAAATATCATAATTTATTGCAATGTACCTTTGATAAAAAT 1541
consensus_12364#1      -------------------------------------------
consensus_12364#2      -------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)