These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTTCGCGGCACACTCCTG-ATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTCTTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCCTTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGTTCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAATCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA] [-] EMBL OSYK35 [CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTTCGCGGCACACTCCTG ATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACA ] [+] EMBL BE040279 [ AAGGGTGATGTTGCAATTCAAACTAGACTTATTCTAAAGATGCAGAGAAGGTAAAGCATAATCCGTTTCGTCAACAACCTTGGTTCCCAGTCCCTTCAAACCCTTAGGAGGGACCTCTGACACAGTGACCAGAGAGTAGAGCTCTTGCTTGGCATCCTCCTGGTTATTCCTCTTGCGGGCGATCCTCACACGAACCCTACGCGGCACACTCCTGAATCCCACTGCTCCAGATGTGCTTGTTGAGCTTTACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTCTTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCCTTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGTTCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAATCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA] consensusID : consensus_12365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 518 fasta sequence [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC-CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG] [+] EMBL CF308788 [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCG ] [-] EMBL AU100901 [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGG ] [+] EMBL CF310454 [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTTCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTC ] [-] EMBL CF310453 [ TTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG] [-] EMBL CF308787 [ TTTTTGCTATAGTCCAAAACTTCTGATTT CCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCT CTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG] [+] EMBL BE607486 [ TTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACA ] [-] EMBL AA751037 [ GTCAACAACCTTGGTTCCCAGCNNCCTTCAAA CCTCA GA GGACCTCGGCCACAGTGACCAGAG GTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCAAGAAGAGCTTCACATCG ] [-] EMBL C27919 [ GGACCTCGGCCANAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGAACCTCACACGAACCCTCCGCGGNAAACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12365#0 CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGT 60 consensus_12365#1 -----------------TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGT 43 * ************************************** consensus_12365#0 TTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCC 120 consensus_12365#1 TTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCC 103 ************************************************************ consensus_12365#0 GTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACA 180 consensus_12365#1 GTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACA 163 ************************************************************ consensus_12365#0 GTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATC 240 consensus_12365#1 GTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATC 223 ************************************************************ consensus_12365#0 CTCACACGAACCCTTCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGC 300 consensus_12365#1 CTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGC 283 ************** ******************* ************************* consensus_12365#0 TTCACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTC 360 consensus_12365#1 TTCACATCGACCCTGACATCTGTAGTGCCCATAGCC-TTCTGCGCAAACTTCCTGATCTC 342 ************************************ ************ * ******** consensus_12365#0 TTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCC 420 consensus_12365#1 TTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCT-GTGGAGGC-GCTTGTGGAGG 400 ** ******** ************************* * ***** ** ** * ** consensus_12365#0 TTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGT 480 consensus_12365#1 TTGATGGTGTACTCCCTC------------GTCACCACCTCC--TCCTTCCTCG--CCGC 444 ** * * ** * ** * * **** **** ** * *** consensus_12365#0 TCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAA 540 consensus_12365#1 TCCTCCCTTC-----TTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGG 499 ** * ** * *** ** * * * ** *** * * * consensus_12365#0 TCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA 598 consensus_12365#1 TTTGCCGCTGTTCCGGCGG--------------------------------------- 518 * **** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||