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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 882 fasta sequence
[AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC-GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG-CGGCCATCGGCGAGGCTC-TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT-GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA-GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA-CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA-TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG]
[+] EMBL AK070249 [AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAA ]
[+] EMBL CB643780 [ AAGACCATGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGGGTTGCTGATACTGTTAGGAACGATGTCATCAAATCATACCGT ]
[+] EMBL CB685715 [ AAGCCTTAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGCCGGTGTCGGCGGCGGCTTCCACACGCTGGTGCTGTTCATCGTGCTCGGAACGAT ]
[+] EMBL AU070384 [ AGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGCGGGCCGTGCTCCCGGCGCCGAAGCCGACGAAGC G CGGCCATCGGCGAGGCTCTTCGTGCA GGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGANGGTCGGCGGGCA AGCGTTNCGGTCTGCGCCAAGGTCCGCGCCACGGCCGTC ]
[+] EMBL AU057048 [ AGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGNGCCGAAGCCGACGAGGCGGNCGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGNGCTCTCGCCTGTCGACGATGGCCATGGNGGCCAAGTCCGGCGGGAGG ]
[+] EMBL CA754137 [ AATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGGCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACAACNATGATTACTGAATTAATTACTGTGTTGCTGATACTGGTAGGGACGATGTCATCAG ]
[-] EMBL CB643781 [ CAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTTTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTTTGCGCCACGGTCCGCGCCACGGCCGTTTGGTCCACGGATAAACAATTCGAGGA GGAACATTTACATCAACCCCCCGGTGGCGCCGCCTTTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTTTCGTTTTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTTGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTTTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTTTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG]
[-] EMBL CB685716 [ GCCAAGTCCGGCGGGAGGGTCGGCTGGCAGGGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTGGAGGAGCGAGCATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAAGGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATCCCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGA ]
[+] EMBL AU057049 [ TCGGNACGATCGTTGGCGCTNTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTATTTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGANCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAACGAGAGTAGATTTGTAAAAAA ]
consensusID : consensus_12366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGNGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGTGATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG]
[+] EMBL OSC8851 [GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGNGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGTGATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12366#0 AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTC 60
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 GCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCA 120
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 CCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGAAGCCGA 180
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 CGAGGCGGCGGCCATCGGCGAGGCTCTCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGC 240
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 GGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGC 300
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 TCGCGCTCTCGCCTGTCGACGATGCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGC 360
consensus_12366#1 -----------------GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCT--CGAGT 41
** * * * * * ** ** * ** *
consensus_12366#0 AGGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATT 420
consensus_12366#1 AGCAGCCATGGCTTTAGCACCCA--CGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTG 99
** * ** * ** * ** * * * * * ** **** ** *
consensus_12366#0 CG-AGGACGAACATCTACATCAACC-CACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGG 478
consensus_12366#1 TGCAGTGNGGGCAGC-ACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGG 158
* ** * ** * ** * ** * ***************************
consensus_12366#0 CTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGC 538
consensus_12366#1 CTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGC 218
************************************************************
consensus_12366#0 CGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGT 598
consensus_12366#1 CGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGT 278
************************************************************
consensus_12366#0 TGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAA 658
consensus_12366#1 TGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAA 338
******************************************* ****************
consensus_12366#0 TTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACC-GTGTGTAA-TGT 716
consensus_12366#1 TTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGT 398
************************** ****************** * ******** ***
consensus_12366#0 GATATAGCGAGGCT--ATTTTTTTTCA-TGTCAATTCTAAGGGAACAGATCGGTAAGCTA 773
consensus_12366#1 GATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG----------------- 441
************ *********** ***************
consensus_12366#0 GAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGT 833
consensus_12366#1 ------------------------------------------------------------
consensus_12366#0 GGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG 882
consensus_12366#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||