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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1350 fasta sequence
[GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG-CCCGCCGTGCCGGGAGTCCCGCTGCCGGAGGTG-CCCGGC-GTCCCTCTGCCGCCGGTGC-CGTCCGTCGTCCCGCCC-GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC-GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC-GCCA-TGCATTGGCC-GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA-GAGAGAGTACAAATTAAGATGACTTGCATGTA-CGTTGTTACGT-CAAGTTGGTATAGTATTTGTGTAATGAACGT-GTGTGTGTGCAGACCA-GGTGCAGTATGT-GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA-TTATACGTGTCATGTTAACAAATATAAAAATCTATCACCGTTTTAATTGTGTATAAAAATGTTGGCAAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA]
[+] EMBL AK069119 [GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG CCCGCCGTGCCGGGAGTCCCGCTGCCGGAGGTG CCCGGC GTCCCTCTGCCGCCGGTGC CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGT ]
[+] EMBL CB682514 [ atGCTCAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG CCCGCCGTGCCGGGAGTCCCTCTGCCGGAAGTG CCCGGC TTC ]
[+] EMBL BM038200 [ tccGGGTTTCTT GACCCT CCGGT CC CC TTG CCCCCCGT CC GGAGTCCCCTTGCCGGA GTGCCCCGGC GTCCCTCT CCGCCGGT C CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTAC AATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAANCTATACGTGTCATGTTAAC AATATAAAAAa ]
[+] EMBL BM418922 [ GACCCTGCCGGTGCC CCGTTGTCCCCCCGTGCCGGGAGTCCCGCT CCGGAGGTG CCCGGCTGTCCCTCTGCCGCCGGTGC CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCCGCTGACGTGTACGTGGCCTTGACCGTGTGC GCCANTGCCTTGGCCNNCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCNCCATATAAATCCTTCTAGCCTTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTNCCTTGTAAACCC GAGAGAGTCCCAATTAACCTGACTTGCATGTACCGTTGTTACGTCCCAGTTGGTATAGTATTTGTGTAAa ]
[+] EMBL BQ906534 [ GGAGTCCCGCTGCCGGAGGTG CCCGGC GTCCCTCTGCCGCCGGTGCACGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCCAGGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATAAAAAAA ]
[+] EMBL BI808357 [ GTCCCGCCCGGTGCCTTAGGTCAACTCC GCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACCTTGTAAAACACGAGAGAGTACCAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATATATTTCTATCACCGTTTTAATTGTGTATAAAAA ]
[+] EMBL BI809172 [ TGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGCGGCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTAC AATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAA TTAaaaaaaaaa ]
[+] EMBL CB681721 [ ACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATA ]
[+] EMBL BI809612 [ TTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGTGGTGTGTGTGCAGACCACGGTGCAGTATGTGGTTTGTGGCGAGTGGCGACCAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATATATTTCTATCACCGTTTTAATTGTGTATATCTTTGTTGGCAAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA]
consensusID : consensus_12367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[TTCCCTCCGTGTTCACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGATAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGTACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTAATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACGGTGTCATGTTAAAAAAAAAA]
[+] EMBL BM421153 [TTCCCTCCGTGTTCACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGATAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGTACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTAATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACGGTGTCATGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12367#0 GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAA 60
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 TTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTG 120
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTC 180
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCC 240
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 ACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACC 300
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 ATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATC 360
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 CCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCG 420
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 ACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGC 480
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTG 540
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 CCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTG 600
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 CCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCG 660
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 CCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTGCCCGCC 720
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GTGCCGGGAGTCCCGCTGCCGGAGGTGCCCGGCGTCCCTCTGCCGCCGGTGCCGTCCGTC 780
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GTCCCGCCCGTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTC 840
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 CGGCCAGCTGACGTGTACGTGGCATTGACCGTGTGCGCCATGCATTGGCCGCCGGCGCCG 900
consensus_12367#1 ------------------------------------------------------------
consensus_12367#0 GCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGT-TTC 959
consensus_12367#1 ----------------------------------------------TTCCCTCCGTGTTC 14
* ******* ***
consensus_12367#0 ACAATATAAATCATTCTAGCATT-TTTCATATT--CATATTGATGTTAAAGAAT-CTAGA 1015
consensus_12367#1 ACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGA 74
** ****** ********** ****** * ******************* *****
consensus_12367#0 TAAATAT--ATATGTGGG-AAATGCTA-AAATGACTTACATTGTAAAA--CAGAGAGAGT 1069
consensus_12367#1 TAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGT 134
****** ********* ******** *********** **** ** **********
consensus_12367#0 ACA-AATTAAGATG-ACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTA 1127
consensus_12367#1 ACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTA 194
*** ********** *********************************************
consensus_12367#0 ATGAACGTGTGTGTGTGCAGACCAGGTGCAGTA-TGTGTTTGTGGCGAGTGGCGACAAAT 1186
consensus_12367#1 ATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAAT 254
**************** ********** * *** **************************
consensus_12367#0 GCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACG-TGT-TGCTTAAATTATACG 1244
consensus_12367#1 GCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACG 314
**************************************** *** *********** ***
consensus_12367#0 -TGTCATGTTAACAAATATAAAAATCTATCACCGTTTTAATTGTGTATAAAAATGTTGGC 1303
consensus_12367#1 GTGTCATGTTAAAAAAAAAA---------------------------------------- 334
*********** *** * *
consensus_12367#0 AAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA 1350
consensus_12367#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||