These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2286 fasta sequence [TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGTTACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGT] [+] EMBL AK099376 [TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGTTACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGA ] [+] EMBL AK064372 [ AGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGT] [+] EMBL CA767214 [ ATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCCACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGGTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAANGNTTTTCAGCCAAGCAACTNCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGNCTGNTCGGTTGGCGTCTCGGTGACAGGANAAGGCATGNTCCTTATG AAAGGTCAGTCCTGATCACGAATAAGTGGCGCANCATTGCAATTCGTGCNCTGGANAAGGATGATCCAC ] [+] EMBL CF307302 [ TGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTA ] [+] EMBL CF323786 [ ACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCC ] consensusID : consensus_12368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1374 fasta sequence [TTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACCTTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTATCTTATATCTGATCATTGAAAGCTCTCATC] [+] EMBL AK107353 [TTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACCTTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTATCTTATATCTGATCATTGAAAGCTCTCATC] consensusID : consensus_12368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 722 fasta sequence [AAGGGGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA-GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAAAAAA] [+] EMBL CB096425 [AAGGGGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCCTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTNCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTNCGANGTTTAT ] [+] EMBL BI798472 [ TTCTTACCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATAC AAACTCCGACACCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTACGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATC CCTTT GCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAAAAAA] [-] EMBL AI978342 [ ATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTC ] [+] EMBL AI978343 [ ACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAgtc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12368#0 TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGT 60 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 TACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTG 120 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 CTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACC 180 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGC 240 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 ACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGAC 300 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGC 360 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTC 420 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 AGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAG 480 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 CTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCAC 540 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 ACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCC 600 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 TTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTAC 660 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 CACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTG 720 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTA 780 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 CTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGG 840 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 ATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTC 900 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 AGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGA 960 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 TCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGG 1020 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 ATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATG 1080 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 TCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATC 1140 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 TATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCAT 1200 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAA 1260 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 AATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTT 1320 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCA 1380 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 ------------------------------------------------------------ consensus_12368#0 GGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACG 1440 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 --------------------------------TTCACCAACCAAGCAGGAATGGCGCTCC 28 consensus_12368#0 CCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATA 1500 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 TGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCA 88 consensus_12368#0 AGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTT 1560 consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 CCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCG 148 consensus_12368#0 GGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTAT 1620 consensus_12368#2 -------------------------AAGGGGCAGACATATCCACTTTGCCTGGCCACTAT 35 consensus_12368#1 GCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAG 208 ** * ** * * * * consensus_12368#0 ATCCTTTTCTGGGA-GCTGACCAATACCTG-TGATAGCAATGTTGCCATTGACATCGACC 1678 consensus_12368#2 ATCCTTTTCTGGGA-GCTGACCAATGCCTG-TGATAGCAATGTTGCCATTGACATCGACC 93 consensus_12368#1 ACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACC 268 * * ** * * ** ** * * * * **** ** ****** consensus_12368#0 AAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCA 1738 consensus_12368#2 AAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCA 153 consensus_12368#1 GCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCC 328 ** * ** * * * ** *** ** * ** consensus_12368#0 AAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTC--TTAGCCATGGTGC 1796 consensus_12368#2 AAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTC--TTAGCCATGGTGC 211 consensus_12368#1 TCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGG 388 * *** * *** * * * * ** *** * * * * ** ** * consensus_12368#0 -GTTTGATGCTCTGATGGACTTCTTTG-TGTCTAGAGGGACATCAGCGAGTCAATACAAA 1854 consensus_12368#2 -GTTTGATGCTCTGATGGACTTCTTTG-TGTCTAGAGGGACATCAGCGAGTCAATACAAA 269 consensus_12368#1 AGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGC 448 * * ** * * ***** ** **** ** * * * ** * * consensus_12368#0 ACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGA 1914 consensus_12368#2 ACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGA 329 consensus_12368#1 ACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGC---GAGGGAATGTACCTCATGT 505 ** **** * * *** **** ** *** * **** * * * consensus_12368#0 AGGTTTTTCA-----GCCAAGCAACTCCCAGCTG--TCGTTCAGCCGAATTTGAGAGGAG 1967 consensus_12368#2 AGGTTTTTCA-----GCCAAGCAACTCCCAGCTG--TCGTTCAGCCGAATTTGAGAGGAA 382 consensus_12368#1 TCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCT 565 * ** ** ** ** * ** * * *** * * * * consensus_12368#0 ATAATAATTGTACTGCCTGTTCGGTTGGCGTC-TCGGTGAC----AGGAGAGGGCATGTT 2022 consensus_12368#2 ATAATAATTGTACTGCCTGTTCGGTTGGCGTC-TCGGTGAC----AGGAGAGGGCATGTT 437 consensus_12368#1 ACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCC 625 * * * * * * * ** *** * * ** * * ** * ** * consensus_12368#0 CCTTATGAAAAGT--TCAGTCCTGATCACGAATAAGTGGCGCA---------GCATTGCA 2071 consensus_12368#2 CCTTATGAAAAGT--TCAGTCCTGATCACGAATAAGTGGCGCA---------GCATTGCA 486 consensus_12368#1 CCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTG 685 ** * * * ** * ** ** *** * * * ** ** consensus_12368#0 ATTCG-TGCACTGGAGAAGGATGATCCAC-TCATCTCCATCTTGGCACGTCCTTTTTCAG 2129 consensus_12368#2 ATTCG-TGCACTGGAGAAGGATGATCCAC-TCATCTCCATCTTGGCACGTCCTTTTTTAG 544 consensus_12368#1 GCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGC-CGCTGGGTTGGTT 744 * *** * * ** ** ** * *** *** ** ** ** consensus_12368#0 TCTGGAATTTGGTCTCAGGAGTATCATTTCGTG----TTTTCTTGTAAATTCAGAAAGAA 2185 consensus_12368#2 TCTGGAATTTGGTCTCAGGAGTATCATTTCGTG----TTTTCTTGTAAATTCAGAAAGAA 600 consensus_12368#1 CGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGG 804 ** ** ** *** **** * * * * * *** * ** * ** * consensus_12368#0 CTTCTGTACTGCTCCTTC-CACATAGCCTTTGG----------GCGT--AACTGTAGACA 2232 consensus_12368#2 CTTCTGTACTGCTCCTTC-CACATCGCCTTTGGCCTTCGGCCGGCGT--AACTGTAGACA 657 consensus_12368#1 CAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTT 864 * ** * ** ** * *** * * * * ** *** consensus_12368#0 CAACCCTTGCTCCGAGGTTTAT------AAGTTACCTCCGAATTTACTGATTGACTGTGT 2286 consensus_12368#2 CAACCCTTGCTCCGAGGTTTAT------AAGTTACCTCCGAATTTACTGATTGACTGTGT 711 consensus_12368#1 CAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGG 924 *** * ** ** **** * ** * ***** * * * ** ** consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 TCTCAAAAAAA------------------------------------------------- 722 consensus_12368#1 GATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGT 984 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 TCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCA 1044 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 CCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCA 1104 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 TCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATG 1164 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 GATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTA 1224 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 AAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACC 1284 consensus_12368#0 ------------------------------------------------------------ consensus_12368#2 ------------------------------------------------------------ consensus_12368#1 TTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTA 1344 consensus_12368#0 ------------------------------ consensus_12368#2 ------------------------------ consensus_12368#1 TCTTATATCTGATCATTGAAAGCTCTCATC 1374 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||